Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold458G51940 Striga asiatica HOM05D003291 ORTHO05D003923 1.8e-133 479.2 228 100.0
Migut.C00602 Erythranthe guttata HOM05D003291 ORTHO05D003923 2.7e-113 412.1 220 88.6
MSTRG.1333 Avicennia marina HOM05D003291 ORTHO05D003923 6.0e-113 411.0 220 88.2
Oeu009557.1 Olea europaea HOM05D003291 ORTHO05D003923 8.7e-112 407.1 220 86.8
CSS0046933 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 1.5e-111 406.4 227 85.5
Hma1.2p1_0260F.1_g104760 Hydrangea macrophylla HOM05D003291 ORTHO05D003923 3.3e-111 405.2 226 85.0
CAN.G1422.3 Capsicum annuum HOM05D003291 ORTHO05D003923 9.6e-111 403.7 224 84.8
SalBow6G1638 Salvia bowleyana HOM05D003291 ORTHO05D003923 1.3e-110 403.3 220 84.5
SalBow6G6854 Salvia bowleyana HOM05D003291 ORTHO05D003923 1.3e-110 403.3 220 84.5
SalBow4G1770 Salvia bowleyana HOM05D003291 ORTHO05D003923 4.8e-110 401.4 220 85.0
Ciclev10000140m.g Citrus clementina HOM05D003291 ORTHO05D003923 6.2e-110 401.0 226 82.7
Peaxi162Scf00064g00220 Petunia axillaris HOM05D003291 ORTHO05D003923 8.1e-110 400.6 224 84.8
Atru.chr13.635 Acer truncatum HOM05D003291 ORTHO05D003923 4.0e-109 398.3 224 82.1
COL.COLO4_26461 Corchorus olitorius HOM05D003291 ORTHO05D003923 4.0e-109 398.3 220 84.1
PGR031G1546 Punica granatum HOM05D003291 ORTHO05D003923 5.3e-109 397.9 220 83.6
unitig_26.g9818 Utricularia gibba HOM05D003291 ORTHO05D003923 5.3e-109 397.9 219 85.4
Nitab4.5_0000068g0460 Nicotiana tabacum HOM05D003291 ORTHO05D003923 6.9e-109 397.5 219 84.9
TWI56G0991 Tripterygium wilfordii HOM05D003291 ORTHO05D003923 6.9e-109 397.5 220 85.0
Potri.014G034400 Populus trichocarpa HOM05D003291 ORTHO05D003923 9.0e-109 397.1 227 81.5
Lj5g0021120 Lotus japonicus HOM05D003291 ORTHO05D003923 1.2e-108 396.7 227 80.6
Lalb_Chr22g0355231 Lupinus albus HOM05D003291 ORTHO05D003923 1.2e-108 396.7 224 83.0
Solyc12g088920.2 Solanum lycopersicum HOM05D003291 ORTHO05D003923 1.2e-108 396.7 224 83.0
Sopen12g030820 Solanum pennellii HOM05D003291 ORTHO05D003923 1.2e-108 396.7 224 83.0
CSS0020917 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 1.5e-108 396.4 221 83.7
CSS0029839 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 1.5e-108 396.4 221 83.7
Nitab4.5_0000453g0160 Nicotiana tabacum HOM05D003291 ORTHO05D003923 1.5e-108 396.4 224 83.5
Thecc.08G012800 Theobroma cacao HOM05D003291 ORTHO05D003923 1.5e-108 396.4 220 84.5
VMungo0647G0987 Vigna mungo HOM05D003291 ORTHO05D003923 1.5e-108 396.4 220 84.1
Dinv35983 Davidia involucrata HOM05D003291 ORTHO05D003923 3.4e-108 395.2 226 83.6
Glyma.17G244600 Glycine max HOM05D003291 ORTHO05D003923 3.4e-108 395.2 227 81.5
Glyma.14G080800 Glycine max HOM05D003291 ORTHO05D003923 4.4e-108 394.8 227 81.1
Nitab4.5_0011844g0020 Nicotiana tabacum HOM05D003291 ORTHO05D003923 4.4e-108 394.8 224 83.0
PGSC0003DMG400015447 Solanum tuberosum HOM05D003291 ORTHO05D003923 4.4e-108 394.8 224 82.6
Hma1.2p1_0337F.1_g129290 Hydrangea macrophylla HOM05D003291 ORTHO05D003923 5.8e-108 394.4 223 82.5
Lalb_Chr14g0368841 Lupinus albus HOM05D003291 ORTHO05D003923 7.6e-108 394.0 226 80.1
GSVIVG01009556001 Vitis vinifera HOM05D003291 ORTHO05D003923 1.3e-107 393.3 227 82.8
Cpa.g.sc297.1 Carica papaya HOM05D003291 ORTHO05D003923 1.7e-107 392.9 226 81.4
Duzib093G1598 Durio zibethinus HOM05D003291 ORTHO05D003923 1.7e-107 392.9 220 83.2
Manes.05G171000 Manihot esculenta HOM05D003291 ORTHO05D003923 1.7e-107 392.9 226 81.9
Cc10_g04020 Coffea canephora HOM05D003291 ORTHO05D003923 2.2e-107 392.5 220 85.0
Nitab4.5_0005301g0010 Nicotiana tabacum HOM05D003291 ORTHO05D003923 2.2e-107 392.5 219 83.6
Phvul.001G019800 Phaseolus vulgaris HOM05D003291 ORTHO05D003923 2.9e-107 392.1 224 81.2
CiPaw.16G047600 Carya illinoinensis HOM05D003291 ORTHO05D003923 3.8e-107 391.7 227 81.1
Rhsim06G0046900 Rhododendron simsii HOM05D003291 ORTHO05D003923 4.9e-107 391.3 220 83.6
CAN.G371.46 Capsicum annuum HOM05D003291 ORTHO05D003923 6.4e-107 391.0 219 83.6
Gohir.D05G203800 Gossypium hirsutum HOM05D003291 ORTHO05D003923 8.4e-107 390.6 224 80.4
Ca_13307_v3 Cicer arietinum L. HOM05D003291 ORTHO05D003923 1.1e-106 390.2 220 82.3
Solyc04g079300.3 Solanum lycopersicum HOM05D003291 ORTHO05D003923 1.1e-106 390.2 217 83.9
Sopen04g032890 Solanum pennellii HOM05D003291 ORTHO05D003923 1.1e-106 390.2 217 83.9
PGSC0003DMG400008030 Solanum tuberosum HOM05D003291 ORTHO05D003923 1.1e-106 390.2 219 83.1
TAR625G0168 Trochodendron aralioides HOM05D003291 ORTHO05D003923 1.1e-106 390.2 220 82.7
arahy.Tifrunner.gnm1.ann1.H8JSRB Arachis hypogaea HOM05D003291 ORTHO05D003923 1.4e-106 389.8 223 82.1
arahy.Tifrunner.gnm1.ann1.NP9S9N Arachis hypogaea HOM05D003291 ORTHO05D003923 1.4e-106 389.8 223 82.1
Haze_17563 Corylus avellana HOM05D003291 ORTHO05D003923 1.4e-106 389.8 227 80.2
Gorai.009G209900 Gossypium raimondii HOM05D003291 ORTHO05D003923 1.4e-106 389.8 219 81.7
MD00G1187500 Malus domestica HOM05D003291 ORTHO05D003923 1.4e-106 389.8 226 80.1
DCAR_028414 Daucus carota HOM05D003291 ORTHO05D003923 1.9e-106 389.4 220 81.8
Cfa018512 Carpinus fangiana HOM05D003291 ORTHO05D003923 2.4e-106 389.0 227 80.2
FAN15G0927 Fragaria x ananassa HOM05D003291 ORTHO05D003923 2.4e-106 389.0 224 80.8
Lj4A52T42 Lonicera japonica HOM05D003291 ORTHO05D003923 2.4e-106 389.0 226 81.0
CANSAT25G2224 Cannabis sativa HOM05D003291 ORTHO05D003923 4.2e-106 388.3 220 82.7
FAN27G0136 Fragaria x ananassa HOM05D003291 ORTHO05D003923 4.2e-106 388.3 224 79.9
Gohir.A05G200600 Gossypium hirsutum HOM05D003291 ORTHO05D003923 4.2e-106 388.3 219 81.3
RcHm_v2.0_Chr6g0307181 Rosa chinensis HOM05D003291 ORTHO05D003923 5.4e-106 387.9 224 80.8
FvH4_2g34860 Fragaria vesca HOM05D003291 ORTHO05D003923 7.1e-106 387.5 224 80.4
ECA246G0633 Erigeron canadensis HOM05D003291 ORTHO05D003923 9.3e-106 387.1 217 83.9
MD15G1086800 Malus domestica HOM05D003291 ORTHO05D003923 1.6e-105 386.3 226 79.6
Sc02g0006950 Simmondsia chinensis HOM05D003291 ORTHO05D003923 2.1e-105 386.0 220 81.8
FAN20G0796 Fragaria x ananassa HOM05D003291 ORTHO05D003923 2.7e-105 385.6 224 79.9
Prupe.1G440500 Prunus persica HOM05D003291 ORTHO05D003923 3.5e-105 385.2 223 80.7
Psat6g012080 Pisum sativum HOM05D003291 ORTHO05D003923 4.6e-105 384.8 224 79.9
HanXRQChr10g0304011 Helianthus annuus HOM05D003291 ORTHO05D003923 6.0e-105 384.4 221 82.8
ECA232G2639 Erigeron canadensis HOM05D003291 ORTHO05D003923 7.8e-105 384.0 217 82.9
Eucgr.B02922 Eucalyptus grandis HOM05D003291 ORTHO05D003923 7.8e-105 384.0 219 81.7
ClCG08G015660 Citrullus lanatus HOM05D003291 ORTHO05D003923 1.0e-104 383.6 224 79.0
Medtr1g020000 Medicago truncatula HOM05D003291 ORTHO05D003923 1.0e-104 383.6 220 81.4
Duzib116G0711 Durio zibethinus HOM05D003291 ORTHO05D003923 1.7e-104 382.9 221 81.9
HanXRQChr02g0056101 Helianthus annuus HOM05D003291 ORTHO05D003923 2.3e-104 382.5 220 80.5
ATR0709G069 Amborella trichopoda HOM05D003291 ORTHO05D003923 3.0e-104 382.1 220 81.4
Sed0000864 Sechium edule HOM05D003291 ORTHO05D003923 3.0e-104 382.1 224 78.6
Actinidia15259 Actinidia chinensis HOM05D003291 ORTHO05D003923 3.9e-104 381.7 217 82.9
Actinidia38048 Actinidia chinensis HOM05D003291 ORTHO05D003923 3.9e-104 381.7 221 83.3
QL02p005794 Quercus lobata HOM05D003291 ORTHO05D003923 3.9e-104 381.7 227 77.1
SGA_v2.0_scaffold208G42005 Striga asiatica HOM05D003291 ORTHO05D003923 3.9e-104 381.7 208 87.0
TPR.G13691 Trifolium pratense HOM05D003291 ORTHO05D003923 8.7e-104 380.6 220 81.4
CDE03G0102 Ceratophyllum demersum HOM05D003291 ORTHO05D003923 1.1e-103 380.2 223 80.7
HanXRQChr16g0507451 Helianthus annuus HOM05D003291 ORTHO05D003923 1.5e-103 379.8 228 79.4
Ah.05g168860 Amaranthus hybridus HOM05D003291 ORTHO05D003923 1.9e-103 379.4 224 79.5
Eucgr.F02708 Eucalyptus grandis HOM05D003291 ORTHO05D003923 1.9e-103 379.4 219 80.8
PSO210G0952 Papaver somniferum HOM05D003291 ORTHO05D003923 2.5e-103 379.0 220 80.5
A03p53920 Brassica napus HOM05D003291 ORTHO05D003923 3.3e-103 378.6 220 79.1
BraA03t14461Z Brassica rapa HOM05D003291 ORTHO05D003923 3.3e-103 378.6 220 79.1
Peaxi162Scf00528g00823 Petunia axillaris HOM05D003291 ORTHO05D003923 4.3e-103 378.3 257 72.4
Aqoxy6G01378 Aquilegia oxysepala HOM05D003291 ORTHO05D003923 5.6e-103 377.9 222 81.1
Oeu006153.2 Olea europaea HOM05D003291 ORTHO05D003923 7.3e-103 377.5 205 86.8
Lsat_1_v5_gn_6_113580 Lactuca sativa HOM05D003291 ORTHO05D003923 9.6e-103 377.1 220 80.0
MELO3C010890.2 Cucumis melo HOM05D003291 ORTHO05D003923 1.3e-102 376.7 228 77.2
THA.LOC104814278 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 1.3e-102 376.7 221 79.2
EL10Ac1g01777 Beta vulgaris HOM05D003291 ORTHO05D003923 1.6e-102 376.3 224 79.0
Nn5g30207 Nelumbo nucifera HOM05D003291 ORTHO05D003923 1.6e-102 376.3 220 80.5
C07p52330 Brassica napus HOM05D003291 ORTHO05D003923 2.1e-102 375.9 217 79.7
BolC7t45726H Brassica oleracea HOM05D003291 ORTHO05D003923 2.1e-102 375.9 217 79.7
TAR381G0638 Trochodendron aralioides HOM05D003291 ORTHO05D003923 2.1e-102 375.9 220 80.0
AUR62022448 Chenopodium quinoa HOM05D003291 ORTHO05D003923 2.8e-102 375.6 224 79.5
AUR62039319 Chenopodium quinoa HOM05D003291 ORTHO05D003923 2.8e-102 375.6 224 79.5
AT4G11800 Arabidopsis thaliana HOM05D003291 ORTHO05D003923 3.6e-102 375.2 220 79.1
AL6G46510 Arabidopsis lyrata HOM05D003291 ORTHO05D003923 6.2e-102 374.4 220 79.1
BcaB01g01679 Brassica carinata HOM05D003291 ORTHO05D003923 1.1e-101 373.6 220 77.7
vmacro21555 Vaccinium macrocarpon HOM05D003291 ORTHO05D003923 4.0e-101 371.7 255 71.4
MBI03_g45559_MAGBIO Magnolia biondii HOM05D003291 ORTHO05D003923 5.3e-101 371.3 214 79.9
Carub.0006s3091 Capsella rubella HOM05D003291 ORTHO05D003923 6.9e-101 370.9 226 75.7
Hund17590 Selenicereus undatus HOM05D003291 ORTHO05D003923 6.9e-101 370.9 227 77.1
Aa31LG9G10630 Aethionema arabicum HOM05D003291 ORTHO05D003923 9.0e-101 370.5 227 76.2
THA.LOC104806367 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 9.0e-101 370.5 220 78.6
AL7G30520 Arabidopsis lyrata HOM05D003291 ORTHO05D003923 1.5e-100 369.8 220 78.2
Thhalv10024304m.g Eutrema salsugineum HOM05D003291 ORTHO05D003923 1.5e-100 369.8 220 77.3
A09p27310 Brassica napus HOM05D003291 ORTHO05D003923 2.0e-100 369.4 220 76.8
MD08G1106100 Malus domestica HOM05D003291 ORTHO05D003923 2.0e-100 369.4 227 76.7
BcaC03g16327 Brassica carinata HOM05D003291 ORTHO05D003923 2.6e-100 369.0 220 77.3
A02p25980 Brassica napus HOM05D003291 ORTHO05D003923 2.6e-100 369.0 220 77.3
C02p41460 Brassica napus HOM05D003291 ORTHO05D003923 2.6e-100 369.0 220 77.3
BolC2t10163H Brassica oleracea HOM05D003291 ORTHO05D003923 2.6e-100 369.0 220 77.3
BraA02t07596Z Brassica rapa HOM05D003291 ORTHO05D003923 2.6e-100 369.0 220 77.3
Thhalv10028387m.g Eutrema salsugineum HOM05D003291 ORTHO05D003923 2.6e-100 369.0 220 76.4
C09p34640 Brassica napus HOM05D003291 ORTHO05D003923 4.5e-100 368.2 220 76.8
BolC9t56309H Brassica oleracea HOM05D003291 ORTHO05D003923 4.5e-100 368.2 220 76.8
Aqoxy5G01279 Aquilegia oxysepala HOM05D003291 ORTHO05D003923 7.6e-100 367.5 220 77.3
BraA09t38297Z Brassica rapa HOM05D003291 ORTHO05D003923 9.9e-100 367.1 220 76.4
CARHR230060 Cardamine hirsuta HOM05D003291 ORTHO05D003923 9.9e-100 367.1 219 78.1
Carub.0007s1827 Capsella rubella HOM05D003291 ORTHO05D003923 1.3e-99 366.7 220 77.3
Gohir.A06G016600 Gossypium hirsutum HOM05D003291 ORTHO05D003923 1.3e-99 366.7 224 77.7
Gohir.D06G014700 Gossypium hirsutum HOM05D003291 ORTHO05D003923 1.3e-99 366.7 224 77.7
Sp6g05650 Schrenkiella parvula HOM05D003291 ORTHO05D003923 2.2e-99 365.9 220 76.4
CARHR254510 Cardamine hirsuta HOM05D003291 ORTHO05D003923 2.9e-99 365.5 232 74.1
Gorai.010G017500 Gossypium raimondii HOM05D003291 ORTHO05D003923 6.4e-99 364.4 224 77.2
Os07g0106000 Oryza sativa ssp. japonica HOM05D003291 ORTHO05D003923 1.9e-98 362.8 227 74.4
Sp7g21090 Schrenkiella parvula HOM05D003291 ORTHO05D003923 3.2e-98 362.1 221 76.5
unitig_578.g16531 Utricularia gibba HOM05D003291 ORTHO05D003923 4.2e-98 361.7 208 81.2
THA.LOC104813013 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 2.1e-97 359.4 220 75.9
Zm00001eb298290 Zea mays HOM05D003291 ORTHO05D003923 3.5e-97 358.6 224 75.0
Lsat_1_v5_gn_4_124081 Lactuca sativa HOM05D003291 ORTHO05D003923 3.9e-96 355.1 202 83.7
Eucgr.B02927 Eucalyptus grandis HOM05D003291 ORTHO05D003923 1.9e-95 352.8 227 72.2
Os07g0134500 Oryza sativa ssp. japonica HOM05D003291 ORTHO05D003923 7.4e-95 350.9 220 74.5
SHI08307 Sapria himalayana HOM05D003291 ORTHO05D003923 1.6e-94 349.7 206 78.6
HPP92_016679 Vanilla planifolia HOM05D003291 ORTHO05D003923 4.8e-94 348.2 220 75.5
Sabra14G0024400 Salix brachista HOM05D003291 ORTHO05D003923 8.1e-94 347.4 208 78.8
DCAR_023940 Daucus carota HOM05D003291 ORTHO05D003923 9.0e-93 344.0 220 76.4
HanXRQChr09g0267981 Helianthus annuus HOM05D003291 ORTHO05D003923 2.6e-92 342.4 220 75.9
SEGI_03228 Sequoiadendron giganteum HOM05D003291 ORTHO05D003923 4.5e-92 341.7 219 70.8
Lj4C776G1 Lonicera japonica HOM05D003291 ORTHO05D003923 1.3e-91 340.1 213 77.5
AagrBONN_evm.TU.Sc2ySwM_368.1909 Anthoceros agrestis HOM05D003291 ORTHO05D003923 1.0e-88 330.5 221 68.8
SMO358G0100 Selaginella moellendorffii HOM05D003291 ORTHO05D003923 3.0e-88 328.9 217 69.6
BcaB05g23806 Brassica carinata HOM05D003291 ORTHO05D003923 1.9e-87 326.2 190 80.0
Mapoly0020s0063 Marchantia polymorpha HOM05D003291 ORTHO05D003923 4.3e-87 325.1 220 68.2
Pp3c1_37890 Physcomitrium patens HOM05D003291 ORTHO05D003923 6.9e-85 317.8 220 65.9
Pp3c5_1910 Physcomitrium patens HOM05D003291 ORTHO05D003923 2.0e-84 316.2 234 65.0
HanXRQChr09g0267941 Helianthus annuus HOM05D003291 ORTHO05D003923 5.8e-84 314.7 225 70.2
CiPaw.16G047500 Carya illinoinensis HOM05D003291 ORTHO05D003923 1.7e-83 313.2 218 67.9
Haze_17560 Corylus avellana HOM05D003291 ORTHO05D003923 1.1e-82 310.5 231 66.2
Cfa018515 Carpinus fangiana HOM05D003291 ORTHO05D003923 2.5e-82 309.3 217 66.4
Nn1g05846 Nelumbo nucifera HOM05D003291 ORTHO05D003923 9.3e-82 307.4 220 70.5
QL02p005735 Quercus lobata HOM05D003291 ORTHO05D003923 2.7e-81 305.8 220 62.7
CBR_g765 Chara braunii HOM05D003291 ORTHO05D003923 1.9e-79 299.7 220 64.5
Haze_17561 Corylus avellana HOM05D003291 ORTHO05D003923 5.9e-76 288.1 219 63.5
Sc02g0006970 Simmondsia chinensis HOM05D003291 ORTHO05D003923 2.1e-65 253.1 153 77.8
Eucgr.L01670 Eucalyptus grandis HOM05D003291 ORTHO05D003923 1.8e-61 240.0 228 56.6
MBI03_g35290_MAGBIO Magnolia biondii HOM05D003291 ORTHO05D003923 1.2e-60 237.3 236 54.2
Cre03.g150800 Chlamydomonas reinhardtii HOM05D003291 ORTHO05D003923 1.0e-51 207.6 204 48.0
CsaV3_2G028120 Cucumis sativus L. HOM05D003291 ORTHO05D003923 3.5e-44 182.6 100 82.0
AT4G23000 Arabidopsis thaliana HOM05D003291 ORTHO05D003923 1.7e-43 180.3 132 70.5
PSO170G2235 Papaver somniferum HOM05D003291 ORTHO05D003923 3.2e-42 176.0 220 44.5
Actinidia22611 Actinidia chinensis HOM05D003291 ORTHO05D003923 4.2e-42 175.6 217 45.6
Actinidia27514 Actinidia chinensis HOM05D003291 ORTHO05D003923 8.0e-41 171.4 87 95.4
Sc02g0006960 Simmondsia chinensis HOM05D003291 ORTHO05D003923 4.9e-38 162.2 87 85.1
Dinv08769 Davidia involucrata HOM05D003291 ORTHO05D003923 3.3e-34 149.4 71 95.8
AagrBONN_evm.TU.Sc2ySwM_228.3178 Anthoceros agrestis HOM05D003291 ORTHO05D003923 7.0e-29 131.7 89 66.3
Gohir.A05G320308 Gossypium hirsutum HOM05D003291 ORTHO05D003923 3.5e-28 129.4 71 78.9
CiPaw.16G047400 Carya illinoinensis HOM05D003291 ORTHO05D003923 3.7e-22 109.4 232 31.5
Actinidia29861 Actinidia chinensis HOM05D003291 ORTHO05D003923 4.6e-20 102.4 72 70.8
CiPaw.16G046700 Carya illinoinensis HOM05D003291 ORTHO05D003923 1.1e-18 97.8 118 51.7
Solyc02g043880.1 Solanum lycopersicum HOM05D003291 ORTHO05D390340 8.1e-09 65.1 50 62.0


User provided reference genes

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