Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1999.9 1023 100.0
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1726.5 1023 89.6
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1456.0 1026 73.3
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1444.9 1022 74.2
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1389.0 1055 69.0
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1224.2 994 63.4
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1212.2 1019 61.4
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1210.3 1029 61.0
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1193.3 1022 60.6
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1192.6 1021 59.9
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1192.6 1023 60.0
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1191.0 1007 61.4
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1190.6 1052 59.3
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1187.9 1073 59.2
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1185.6 1020 59.1
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1185.2 1010 60.3
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1177.2 1021 59.6
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1174.5 1019 60.6
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1173.3 1019 59.6
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1172.5 1025 59.4
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1168.7 1013 59.3
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1166.0 1028 59.2
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1164.1 1016 59.4
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1162.1 1049 58.7
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1159.1 1024 59.3
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1156.4 1023 58.9
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1155.2 1024 59.2
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1154.4 1022 59.3
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1154.0 1019 59.3
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1152.9 1018 59.0
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1152.5 1020 59.1
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1150.6 1001 60.1
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1150.2 1013 59.9
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1149.4 1020 59.0
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1149.4 1018 59.2
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1149.0 1027 58.6
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1147.9 1018 57.9
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1147.9 1014 58.7
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1143.3 1019 59.3
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1135.9 1020 57.1
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1132.9 1024 58.5
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1129.0 1012 58.6
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1120.9 1020 57.2
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1118.6 1028 57.2
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1118.6 1020 57.7
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1109.4 1014 57.2
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1109.0 1022 55.9
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1107.8 1007 59.2
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1107.4 1018 56.5
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1106.3 1027 57.0
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1105.9 1016 57.1
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1099.0 1019 56.3
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1096.6 1019 56.4
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1094.0 1024 56.7
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1081.6 1013 55.1
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1080.5 1023 56.1
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1078.5 1013 54.9
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 7.0e-312 1074.7 1019 56.0
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 1.4e-311 1072.8 1013 54.7
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 6.5e-308 1060.8 1022 55.9
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 1.4e-307 1059.7 992 56.2
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 2.5e-307 1058.9 1011 54.4
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 3.6e-306 1055.0 1048 54.6
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 3.9e-305 1051.6 1057 54.8
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 1.9e-304 1049.3 1016 54.6
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 3.7e-303 1045.0 911 59.7
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 1.1e-302 1043.5 998 55.2
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 8.2e-295 1017.3 1028 53.3
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 1.2e-293 1013.4 1027 52.5
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 3.8e-292 1008.4 961 55.8
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 1.0e-289 1000.3 1026 52.3
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 4.1e-286 988.4 1033 51.6
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 2.6e-285 985.7 1031 51.9
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 2.2e-284 982.6 1036 51.4
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 1.5e-283 979.9 990 52.9
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 4.2e-283 978.4 1028 51.8
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 5.5e-283 978.0 1028 51.9
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 4.0e-281 971.8 1032 51.8
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 4.4e-280 968.4 1037 51.9
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 2.2e-279 966.1 1028 52.1
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 1.1e-275 953.7 851 59.5
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 1.5e-275 953.4 1048 50.6
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 1.8e-273 946.4 913 55.3
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 2.0e-272 943.0 1041 50.1
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 2.6e-272 942.6 1016 51.1
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 8.3e-271 937.6 1042 50.2
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 9.5e-267 924.1 970 51.1
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 2.2e-263 912.9 1026 50.0
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 1.2e-261 907.1 1031 48.1
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.3e-259 899.0 1018 48.7
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.8e-241 840.1 777 59.2
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 1.5e-240 837.0 735 58.4
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 4.7e-234 815.5 1025 47.2
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 5.7e-195 685.6 650 56.0
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.6e-192 676.8 597 57.0
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.7e-183 647.5 659 53.7
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.2e-183 647.1 659 53.7
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.6e-165 587.8 625 54.2
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 4.5e-160 569.7 1071 36.1
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 2.7e-152 543.9 1014 36.9
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 3.5e-152 543.5 554 56.5
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 4.1e-145 520.0 350 75.1
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 1.7e-138 498.0 530 52.5
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 5.0e-135 486.5 389 62.2
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 1.6e-133 481.5 905 36.7
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 3.0e-103 380.9 1115 29.8
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 1.7e-98 365.2 1136 29.0
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.3e-90 339.0 442 43.4
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.2e-83 315.8 326 49.7
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 4.2e-73 280.8 367 42.0
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 1.5e-67 262.3 267 52.1
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 7.0e-60 236.9 561 32.8
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 5.7e-54 217.2 219 54.3
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.8e-44 185.7 148 60.1
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 7.7e-43 180.3 228 47.8
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 5.7e-38 164.1 187 51.9
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 5.5e-33 147.5 149 46.3
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 4.1e-28 131.3 422 28.4
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.4e-28 131.0 79 78.5
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.7e-26 125.9 219 37.9
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.0e-23 116.7 146 42.5
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.2e-22 113.2 67 80.6
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 3.4e-22 111.7 178 38.8
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.8e-22 110.9 67 79.1
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.7e-21 109.4 102 51.0
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 3.3e-17 95.1 104 48.1
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 4.3e-17 94.7 224 35.7
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 5.6e-17 94.4 126 42.9
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 4.9e-13 81.3 76 48.7
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 1.4e-12 79.7 50 68.0
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 4.1e-12 78.2 236 29.7
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 4.1e-12 78.2 65 61.5
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 3.5e-11 75.1 154 37.7
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 1.3e-10 73.2 55 54.5
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 1.3e-10 73.2 55 54.5
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 8.6e-10 70.5 65 58.5
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 5.2e-07 61.2 34 82.4
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 6.8e-07 60.8 44 56.8


User provided reference genes

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