Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold456G51921 Striga asiatica HOM05D003834 ORTHO05D004483 1.8e-96 355.9 182 100.0
SGA_v2.0_scaffold456G51916 Striga asiatica HOM05D003834 ORTHO05D004483 4.4e-90 334.7 175 97.7
SGA_v2.0_scaffold168G38536 Striga asiatica HOM05D003834 ORTHO05D004483 2.2e-86 322.4 179 90.5
SGA_v2.0_scaffold304G47939 Striga asiatica HOM05D003834 ORTHO05D004483 4.2e-85 318.2 167 97.6
MSTRG.15783 Avicennia marina HOM05D003834 ORTHO05D004483 2.3e-59 232.6 176 69.9
Migut.M01671 Erythranthe guttata HOM05D003834 ORTHO05D004483 2.3e-59 232.6 177 70.1
MSTRG.6988 Avicennia marina HOM05D003834 ORTHO05D004483 3.0e-59 232.3 180 68.3
SalBow8G1137 Salvia bowleyana HOM05D003834 ORTHO05D004483 1.2e-58 230.3 177 68.9
Oeu057086.1 Olea europaea HOM05D003834 ORTHO05D004483 9.8e-58 227.3 178 68.5
SGA_v2.0_scaffold171G38885 Striga asiatica HOM05D003834 ORTHO05D004483 8.6e-54 214.2 130 80.8
CSS0019206 Camellia sinensis var. sinensis HOM05D003834 ORTHO05D004483 1.5e-53 213.4 166 64.5
Dinv40838 Davidia involucrata HOM05D003834 ORTHO05D004483 2.1e-52 209.5 182 59.9
TAR627G0963 Trochodendron aralioides HOM05D003834 ORTHO05D004483 2.1e-52 209.5 166 65.1
Manes.03G138400 Manihot esculenta HOM05D003834 ORTHO05D004483 3.1e-51 205.7 155 67.1
CSS0039625 Camellia sinensis var. sinensis HOM05D003834 ORTHO05D004483 6.8e-51 204.5 182 58.2
Ciclev10007688m.g Citrus clementina HOM05D003834 ORTHO05D004483 8.9e-51 204.1 178 60.7
Cfa020225 Carpinus fangiana HOM05D003834 ORTHO05D004483 2.0e-50 203.0 171 63.2
Hma1.2p1_0036F.1_g022680 Hydrangea macrophylla HOM05D003834 ORTHO05D004483 2.6e-50 202.6 156 65.4
Lj8A176T68 Lonicera japonica HOM05D003834 ORTHO05D004483 3.4e-50 202.2 166 63.3
Sabra16G0238600 Salix brachista HOM05D003834 ORTHO05D004483 4.4e-50 201.8 185 58.4
TWI38G0150 Tripterygium wilfordii HOM05D003834 ORTHO05D004483 4.4e-50 201.8 178 58.4
Potri.001G362100 Populus trichocarpa HOM05D003834 ORTHO05D004483 7.5e-50 201.1 155 65.8
CAN.G337.23 Capsicum annuum HOM05D003834 ORTHO05D004483 1.3e-49 200.3 184 58.2
Cc05_g14750 Coffea canephora HOM05D003834 ORTHO05D004483 1.3e-49 200.3 177 59.9
QL08p005445 Quercus lobata HOM05D003834 ORTHO05D004483 1.3e-49 200.3 178 60.7
CiPaw.12G136300 Carya illinoinensis HOM05D003834 ORTHO05D004483 1.7e-49 199.9 177 60.5
Haze_09794 Corylus avellana HOM05D003834 ORTHO05D004483 4.9e-49 198.4 155 64.5
TWI39G0575 Tripterygium wilfordii HOM05D003834 ORTHO05D004483 4.9e-49 198.4 181 58.0
GSVIVG01037786001 Vitis vinifera HOM05D003834 ORTHO05D004483 6.4e-49 198.0 150 68.7
Nitab4.5_0000461g0120 Nicotiana tabacum HOM05D003834 ORTHO05D004483 8.3e-49 197.6 187 56.7
TAR629G2412 Trochodendron aralioides HOM05D003834 ORTHO05D004483 8.3e-49 197.6 166 62.0
Atru.chr2.3629 Acer truncatum HOM05D003834 ORTHO05D004483 1.4e-48 196.8 183 57.4
arahy.Tifrunner.gnm1.ann1.C43X3W Arachis hypogaea HOM05D003834 ORTHO05D004483 1.4e-48 196.8 179 58.7
Nitab4.5_0003612g0010 Nicotiana tabacum HOM05D003834 ORTHO05D004483 1.4e-48 196.8 187 56.1
Solyc07g065310.3 Solanum lycopersicum HOM05D003834 ORTHO05D004483 1.9e-48 196.4 178 59.6
Sopen07g033510 Solanum pennellii HOM05D003834 ORTHO05D004483 1.9e-48 196.4 178 59.6
Cpa.g.sc12.186 Carica papaya HOM05D003834 ORTHO05D004483 4.1e-48 195.3 155 65.8
PSO210G2219 Papaver somniferum HOM05D003834 ORTHO05D004483 4.1e-48 195.3 178 58.4
PGSC0003DMG400022184 Solanum tuberosum HOM05D003834 ORTHO05D004483 4.1e-48 195.3 178 59.6
Duzib170G1101 Durio zibethinus HOM05D003834 ORTHO05D004483 5.4e-48 194.9 166 60.8
Gohir.D11G287600 Gossypium hirsutum HOM05D003834 ORTHO05D004483 5.4e-48 194.9 184 58.7
CANSAT11G2090 Cannabis sativa HOM05D003834 ORTHO05D004483 9.2e-48 194.1 156 63.5
vmacro11558 Vaccinium macrocarpon HOM05D003834 ORTHO05D004483 1.2e-47 193.7 180 56.1
Gorai.007G310900 Gossypium raimondii HOM05D003834 ORTHO05D004483 1.6e-47 193.4 184 58.2
Nn1g07452 Nelumbo nucifera HOM05D003834 ORTHO05D004483 2.0e-47 193.0 182 57.1
Actinidia05029 Actinidia chinensis HOM05D003834 ORTHO05D004483 2.7e-47 192.6 185 58.9
Gohir.A11G277200 Gossypium hirsutum HOM05D003834 ORTHO05D004483 2.7e-47 192.6 184 58.2
Peaxi162Scf00285g00817 Petunia axillaris HOM05D003834 ORTHO05D004483 4.6e-47 191.8 183 56.3
PSO302G0051 Papaver somniferum HOM05D003834 ORTHO05D004483 1.0e-46 190.7 178 56.7
COL.COLO4_09798 Corchorus olitorius HOM05D003834 ORTHO05D004483 2.3e-46 189.5 185 56.8
Aqoxy4G02225 Aquilegia oxysepala HOM05D003834 ORTHO05D004483 6.6e-46 188.0 164 58.5
MD03G1188400 Malus domestica HOM05D003834 ORTHO05D004483 1.1e-45 187.2 177 56.5
Thecc.07G019500 Theobroma cacao HOM05D003834 ORTHO05D004483 1.1e-45 187.2 136 69.9
Glyma.14G015600 Glycine max HOM05D003834 ORTHO05D004483 1.5e-45 186.8 179 59.8
MD11G1204000 Malus domestica HOM05D003834 ORTHO05D004483 1.5e-45 186.8 177 57.6
Nn1g03233 Nelumbo nucifera HOM05D003834 ORTHO05D004483 1.5e-45 186.8 166 58.4
arahy.Tifrunner.gnm1.ann1.BBM6FL Arachis hypogaea HOM05D003834 ORTHO05D004483 1.9e-45 186.4 170 58.8
arahy.Tifrunner.gnm1.ann1.08QZGW Arachis hypogaea HOM05D003834 ORTHO05D004483 3.3e-45 185.7 155 63.2
Lalb_Chr04g0247941 Lupinus albus HOM05D003834 ORTHO05D004483 4.3e-45 185.3 179 57.5
Lalb_Chr17g0348801 Lupinus albus HOM05D003834 ORTHO05D004483 4.3e-45 185.3 181 56.9
MBI16_g26376_MAGBIO Magnolia biondii HOM05D003834 ORTHO05D004483 4.3e-45 185.3 186 55.4
PSO541G6272 Papaver somniferum HOM05D003834 ORTHO05D004483 4.3e-45 185.3 176 55.1
VMungo0647G1153 Vigna mungo HOM05D003834 ORTHO05D004483 4.3e-45 185.3 178 59.6
Gohir.D01G073900 Gossypium hirsutum HOM05D003834 ORTHO05D004483 5.6e-45 184.9 178 57.9
LjContig00272g0006391 Lotus japonicus HOM05D003834 ORTHO05D004483 5.6e-45 184.9 181 58.0
ECA236G2134 Erigeron canadensis HOM05D003834 ORTHO05D004483 7.3e-45 184.5 165 60.0
Medtr5g094740 Medicago truncatula HOM05D003834 ORTHO05D004483 7.3e-45 184.5 179 57.0
Sc16g0007940 Simmondsia chinensis HOM05D003834 ORTHO05D004483 7.3e-45 184.5 162 61.1
Psat2g008920 Pisum sativum HOM05D003834 ORTHO05D004483 1.2e-44 183.7 180 56.1
Gorai.002G097000 Gossypium raimondii HOM05D003834 ORTHO05D004483 2.1e-44 183.0 178 57.3
Ca_06377_v3 Cicer arietinum L. HOM05D003834 ORTHO05D004483 2.8e-44 182.6 182 56.6
Gohir.A01G087800 Gossypium hirsutum HOM05D003834 ORTHO05D004483 3.6e-44 182.2 178 57.3
PSO675G1367 Papaver somniferum HOM05D003834 ORTHO05D004483 4.7e-44 181.8 195 51.3
Thhalv10011303m.g Eutrema salsugineum HOM05D003834 ORTHO05D004483 6.2e-44 181.4 178 52.8
Prupe.4G235000 Prunus persica HOM05D003834 ORTHO05D004483 8.1e-44 181.0 180 54.4
TPR.G14161 Trifolium pratense HOM05D003834 ORTHO05D004483 8.1e-44 181.0 177 58.2
CDE10G0297 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 1.4e-43 180.3 166 54.2
Ah.04g166460 Amaranthus hybridus HOM05D003834 ORTHO05D004483 1.8e-43 179.9 174 55.2
Eucgr.F03700 Eucalyptus grandis HOM05D003834 ORTHO05D004483 1.8e-43 179.9 160 60.6
Phvul.008G276000 Phaseolus vulgaris HOM05D003834 ORTHO05D004483 3.1e-43 179.1 179 59.8
FAN16G1958 Fragaria x ananassa HOM05D003834 ORTHO05D004483 5.2e-43 178.3 177 54.8
FAN21G0517 Fragaria x ananassa HOM05D003834 ORTHO05D004483 6.8e-43 177.9 155 60.6
Lj1A793T50 Lonicera japonica HOM05D003834 ORTHO05D004483 6.8e-43 177.9 182 54.4
FAN11G3562 Fragaria x ananassa HOM05D003834 ORTHO05D004483 8.9e-43 177.6 177 54.8
FAN25G0041 Fragaria x ananassa HOM05D003834 ORTHO05D004483 8.9e-43 177.6 177 54.8
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 1.2e-42 177.2 166 53.6
AT3G13070 Arabidopsis thaliana HOM05D003834 ORTHO05D004483 1.5e-42 176.8 175 52.6
PGR031G3702 Punica granatum HOM05D003834 ORTHO05D004483 1.5e-42 176.8 177 56.5
THA.LOC104822741 Tarenaya hassleriana HOM05D003834 ORTHO05D004483 1.5e-42 176.8 167 57.5
ATR0712G125 Amborella trichopoda HOM05D003834 ORTHO05D004483 2.0e-42 176.4 163 54.0
AL3G24810 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 2.0e-42 176.4 175 52.6
FAN25G1232 Fragaria x ananassa HOM05D003834 ORTHO05D004483 3.4e-42 175.6 177 54.2
Glyma.02G298200 Glycine max HOM05D003834 ORTHO05D004483 3.4e-42 175.6 179 56.4
RcHm_v2.0_Chr5g0042791 Rosa chinensis HOM05D003834 ORTHO05D004483 4.4e-42 175.3 177 54.8
Carub.0003s1241 Capsella rubella HOM05D003834 ORTHO05D004483 9.8e-42 174.1 175 52.0
Sp1g41540 Schrenkiella parvula HOM05D003834 ORTHO05D004483 9.8e-42 174.1 178 50.6
unitig_85.g27343 Utricularia gibba HOM05D003834 ORTHO05D004483 1.7e-41 173.3 163 61.3
AT1G55930 Arabidopsis thaliana HOM05D003834 ORTHO05D004483 2.2e-41 172.9 164 54.9
CsaV3_7G018550 Cucumis sativus L. HOM05D003834 ORTHO05D004483 2.9e-41 172.6 180 55.0
Carub.0001s4454 Capsella rubella HOM05D003834 ORTHO05D004483 4.9e-41 171.8 164 54.9
MELO3C024905.2 Cucumis melo HOM05D003834 ORTHO05D004483 8.3e-41 171.0 180 54.4
EL10Ac4g07610 Beta vulgaris HOM05D003834 ORTHO05D004483 1.4e-40 170.2 172 51.7
DCAR_012909 Daucus carota HOM05D003834 ORTHO05D004483 1.4e-40 170.2 170 52.4
Thhalv10020238m.g Eutrema salsugineum HOM05D003834 ORTHO05D004483 1.4e-40 170.2 175 51.4
Aa31LG8G300 Aethionema arabicum HOM05D003834 ORTHO05D004483 3.2e-40 169.1 182 48.4
BcaC05g29213 Brassica carinata HOM05D003834 ORTHO05D004483 4.1e-40 168.7 174 51.7
C05p54850 Brassica napus HOM05D003834 ORTHO05D004483 4.1e-40 168.7 174 51.7
BolC5t34156H Brassica oleracea HOM05D003834 ORTHO05D004483 4.1e-40 168.7 174 51.7
BraA05t22447Z Brassica rapa HOM05D003834 ORTHO05D004483 4.1e-40 168.7 174 51.7
A05p36450 Brassica napus HOM05D003834 ORTHO05D004483 5.4e-40 168.3 174 51.7
AL1G64090 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 7.1e-40 167.9 164 53.7
HanXRQChr11g0333951 Helianthus annuus HOM05D003834 ORTHO05D004483 7.1e-40 167.9 120 67.5
BcaB06g25489 Brassica carinata HOM05D003834 ORTHO05D004483 1.6e-39 166.8 174 51.1
ClCG09G021080 Citrullus lanatus HOM05D003834 ORTHO05D004483 1.6e-39 166.8 180 53.3
BcaC01g04008 Brassica carinata HOM05D003834 ORTHO05D004483 4.6e-39 165.2 146 58.2
CARHR087650 Cardamine hirsuta HOM05D003834 ORTHO05D004483 4.6e-39 165.2 175 51.4
Gohir.A13G134601 Gossypium hirsutum HOM05D003834 ORTHO05D004483 4.6e-39 165.2 136 65.4
Sp3g11240 Schrenkiella parvula HOM05D003834 ORTHO05D004483 6.0e-39 164.9 175 49.1
AUR62017064 Chenopodium quinoa HOM05D003834 ORTHO05D004483 7.8e-39 164.5 174 51.7
Lsat_1_v5_gn_7_113161 Lactuca sativa HOM05D003834 ORTHO05D004483 1.3e-38 163.7 173 53.8
AUR62040651 Chenopodium quinoa HOM05D003834 ORTHO05D004483 3.0e-38 162.5 176 51.1
A03p38030 Brassica napus HOM05D000121 ORTHO05D004483 3.9e-38 162.2 146 57.5
C03p46120 Brassica napus HOM05D003834 ORTHO05D004483 3.9e-38 162.2 146 57.5
BolC3t16884H Brassica oleracea HOM05D003834 ORTHO05D004483 3.9e-38 162.2 146 57.5
BraA03t12955Z Brassica rapa HOM05D003834 ORTHO05D004483 3.9e-38 162.2 146 57.5
Sed0024668 Sechium edule HOM05D003834 ORTHO05D004483 5.1e-38 161.8 178 50.6
Sed0001420 Sechium edule HOM05D003834 ORTHO05D004483 1.5e-37 160.2 176 52.8
DCAR_019235 Daucus carota HOM05D003834 ORTHO05D004483 2.5e-37 159.5 154 55.2
Oeu044499.1 Olea europaea HOM05D003834 ORTHO05D004483 5.6e-37 158.3 159 58.5
HanXRQChr04g0126521 Helianthus annuus HOM05D003834 ORTHO05D004483 1.2e-36 157.1 122 62.3
AL1G64150 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 4.7e-36 155.2 164 51.8
DCAR_012924 Daucus carota HOM05D003834 ORTHO05D004483 1.4e-35 153.7 158 51.3
Dinv05352 Davidia involucrata HOM05D003834 ORTHO05D004483 2.6e-34 149.4 101 68.3
QL08p006267 Quercus lobata HOM05D003834 ORTHO05D004483 2.6e-34 149.4 108 64.8
Os03g0593200 Oryza sativa ssp. japonica HOM05D003834 ORTHO05D004483 4.1e-32 142.1 155 47.7
SMO367G1292 Selaginella moellendorffii HOM05D003834 ORTHO05D004483 4.1e-32 142.1 122 57.4
ECA236G2833 Erigeron canadensis HOM05D003834 ORTHO05D004483 5.4e-32 141.7 164 47.6
AagrBONN_evm.TU.Sc2ySwM_344.3938 Anthoceros agrestis HOM05D003834 ORTHO05D004483 9.2e-32 141.0 128 57.8
Zm00001eb049810 Zea mays HOM05D003834 ORTHO05D004483 1.6e-31 140.2 140 50.0
Actinidia00091 Actinidia chinensis HOM05D003834 ORTHO05D004483 3.9e-30 135.6 123 58.5
Lsat_1_v5_gn_7_95440 Lactuca sativa HOM05D003834 ORTHO05D004483 8.6e-30 134.4 116 55.2
FvH4_3g24130 Fragaria vesca HOM05D003834 ORTHO05D004483 1.5e-29 133.7 101 63.4
Pp3c1_38160 Physcomitrium patens HOM05D003834 ORTHO05D004483 4.3e-29 132.1 125 56.0
Pp3c2_3830 Physcomitrium patens HOM05D003834 ORTHO05D004483 4.3e-29 132.1 177 43.5
SEGI_18466 Sequoiadendron giganteum HOM05D003834 ORTHO05D004483 5.6e-29 131.7 125 54.4
HPP92_024890 Vanilla planifolia HOM05D003834 ORTHO05D004483 8.1e-28 127.9 160 46.9
Mapoly0112s0016 Marchantia polymorpha HOM05D003834 ORTHO05D004483 1.8e-27 126.7 154 48.7
Pp3c10_7850 Physcomitrium patens HOM05D003834 ORTHO05D004483 4.0e-27 125.6 126 52.4
Lj6g0012228 Lotus japonicus HOM05D003834 ORTHO05D004483 1.9e-24 116.7 101 58.4
Lj6g0000188 Lotus japonicus HOM05D000121 ORTHO05D000102 7.1e-24 114.8 98 59.2
CBR_g22294 Chara braunii HOM05D003834 ORTHO05D004483 5.1e-22 108.6 149 39.6
arahy.Tifrunner.gnm1.ann1.UPI3MA Arachis hypogaea HOM05D003834 ORTHO05D004483 3.6e-12 75.9 106 43.4
CiPaw.11G201400 Carya illinoinensis HOM05D003834 ORTHO05D004483 3.6e-12 75.9 52 73.1
RcHm_v2.0_Chr5g0043091 Rosa chinensis HOM05D003834 ORTHO05D004483 4.5e-10 68.9 40 77.5


User provided reference genes

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