Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold456G51916 Striga asiatica HOM05D003834 ORTHO05D004483 1.7e-94 349.4 178 100.0
SGA_v2.0_scaffold456G51921 Striga asiatica HOM05D003834 ORTHO05D004483 4.3e-90 334.7 175 97.7
SGA_v2.0_scaffold304G47939 Striga asiatica HOM05D003834 ORTHO05D004483 3.4e-87 325.1 167 99.4
SGA_v2.0_scaffold168G38536 Striga asiatica HOM05D003834 ORTHO05D004483 3.7e-86 321.6 174 93.1
MSTRG.6988 Avicennia marina HOM05D003834 ORTHO05D004483 7.1e-61 237.7 176 71.0
MSTRG.15783 Avicennia marina HOM05D003834 ORTHO05D004483 4.6e-60 235.0 172 72.1
Migut.M01671 Erythranthe guttata HOM05D003834 ORTHO05D004483 1.3e-59 233.4 173 71.7
SalBow8G1137 Salvia bowleyana HOM05D003834 ORTHO05D004483 8.7e-59 230.7 173 70.5
Oeu057086.1 Olea europaea HOM05D003834 ORTHO05D004483 5.6e-58 228.0 174 70.1
SGA_v2.0_scaffold171G38885 Striga asiatica HOM05D003834 ORTHO05D004483 1.5e-55 219.9 126 84.9
Dinv40838 Davidia involucrata HOM05D003834 ORTHO05D004483 8.4e-54 214.2 178 61.8
CSS0019206 Camellia sinensis var. sinensis HOM05D003834 ORTHO05D004483 1.1e-53 213.8 162 66.0
TAR627G0963 Trochodendron aralioides HOM05D003834 ORTHO05D004483 1.6e-52 209.9 162 66.7
Manes.03G138400 Manihot esculenta HOM05D003834 ORTHO05D004483 2.3e-51 206.1 151 68.9
QL08p005445 Quercus lobata HOM05D003834 ORTHO05D004483 2.3e-51 206.1 175 62.9
CSS0039625 Camellia sinensis var. sinensis HOM05D003834 ORTHO05D004483 3.9e-51 205.3 178 59.6
Cfa020225 Carpinus fangiana HOM05D003834 ORTHO05D004483 3.9e-51 205.3 167 65.3
Ciclev10007688m.g Citrus clementina HOM05D003834 ORTHO05D004483 6.7e-51 204.5 174 62.1
Haze_09794 Corylus avellana HOM05D003834 ORTHO05D004483 1.1e-50 203.8 151 67.5
Sabra16G0238600 Salix brachista HOM05D003834 ORTHO05D004483 1.5e-50 203.4 181 60.2
Hma1.2p1_0036F.1_g022680 Hydrangea macrophylla HOM05D003834 ORTHO05D004483 1.9e-50 203.0 152 67.1
CiPaw.12G136300 Carya illinoinensis HOM05D003834 ORTHO05D004483 2.5e-50 202.6 173 62.4
Lj8A176T68 Lonicera japonica HOM05D003834 ORTHO05D004483 2.5e-50 202.6 162 64.8
Potri.001G362100 Populus trichocarpa HOM05D003834 ORTHO05D004483 2.5e-50 202.6 151 68.2
Cc05_g14750 Coffea canephora HOM05D003834 ORTHO05D004483 7.4e-50 201.1 174 60.9
TWI38G0150 Tripterygium wilfordii HOM05D003834 ORTHO05D004483 9.6e-50 200.7 174 59.2
CAN.G337.23 Capsicum annuum HOM05D003834 ORTHO05D004483 1.6e-49 199.9 180 58.9
arahy.Tifrunner.gnm1.ann1.C43X3W Arachis hypogaea HOM05D003834 ORTHO05D004483 2.1e-49 199.5 175 60.6
CANSAT11G2090 Cannabis sativa HOM05D003834 ORTHO05D004483 2.1e-49 199.5 152 66.4
TWI39G0575 Tripterygium wilfordii HOM05D003834 ORTHO05D004483 3.7e-49 198.7 177 59.3
Nn1g07452 Nelumbo nucifera HOM05D003834 ORTHO05D004483 4.8e-49 198.4 178 59.6
GSVIVG01037786001 Vitis vinifera HOM05D003834 ORTHO05D004483 4.8e-49 198.4 146 70.5
Nitab4.5_0000461g0120 Nicotiana tabacum HOM05D003834 ORTHO05D004483 6.2e-49 198.0 183 57.9
vmacro11558 Vaccinium macrocarpon HOM05D003834 ORTHO05D004483 6.2e-49 198.0 184 56.0
Atru.chr2.3629 Acer truncatum HOM05D003834 ORTHO05D004483 1.1e-48 197.2 179 58.7
Nitab4.5_0003612g0010 Nicotiana tabacum HOM05D003834 ORTHO05D004483 1.1e-48 197.2 183 57.4
TAR629G2412 Trochodendron aralioides HOM05D003834 ORTHO05D004483 1.1e-48 197.2 162 63.0
Solyc07g065310.3 Solanum lycopersicum HOM05D003834 ORTHO05D004483 2.4e-48 196.1 174 60.3
Sopen07g033510 Solanum pennellii HOM05D003834 ORTHO05D004483 2.4e-48 196.1 174 60.3
Cpa.g.sc12.186 Carica papaya HOM05D003834 ORTHO05D004483 3.1e-48 195.7 151 67.5
Gohir.D11G287600 Gossypium hirsutum HOM05D003834 ORTHO05D004483 3.1e-48 195.7 180 60.0
PSO210G2219 Papaver somniferum HOM05D003834 ORTHO05D004483 3.1e-48 195.7 174 59.8
Duzib170G1101 Durio zibethinus HOM05D003834 ORTHO05D004483 4.0e-48 195.3 162 62.3
PGSC0003DMG400022184 Solanum tuberosum HOM05D003834 ORTHO05D004483 5.3e-48 194.9 174 60.3
Gorai.007G310900 Gossypium raimondii HOM05D003834 ORTHO05D004483 9.0e-48 194.1 180 59.4
Gohir.A11G277200 Gossypium hirsutum HOM05D003834 ORTHO05D004483 1.5e-47 193.4 180 59.4
Actinidia05029 Actinidia chinensis HOM05D003834 ORTHO05D004483 2.0e-47 193.0 181 59.7
Peaxi162Scf00285g00817 Petunia axillaris HOM05D003834 ORTHO05D004483 3.4e-47 192.2 179 57.5
PSO302G0051 Papaver somniferum HOM05D003834 ORTHO05D004483 7.6e-47 191.0 174 58.0
Lalb_Chr17g0348801 Lupinus albus HOM05D003834 ORTHO05D004483 9.9e-47 190.7 177 59.3
Lalb_Chr04g0247941 Lupinus albus HOM05D003834 ORTHO05D004483 1.3e-46 190.3 175 60.0
COL.COLO4_09798 Corchorus olitorius HOM05D003834 ORTHO05D004483 1.7e-46 189.9 181 58.0
MD03G1188400 Malus domestica HOM05D003834 ORTHO05D004483 1.7e-46 189.9 173 58.4
arahy.Tifrunner.gnm1.ann1.BBM6FL Arachis hypogaea HOM05D003834 ORTHO05D004483 2.9e-46 189.1 166 60.8
Glyma.14G015600 Glycine max HOM05D003834 ORTHO05D004483 2.9e-46 189.1 175 61.7
MD11G1204000 Malus domestica HOM05D003834 ORTHO05D004483 2.9e-46 189.1 173 59.5
Medtr5g094740 Medicago truncatula HOM05D003834 ORTHO05D004483 2.9e-46 189.1 175 58.9
Psat2g008920 Pisum sativum HOM05D003834 ORTHO05D004483 2.9e-46 189.1 176 58.0
Aqoxy4G02225 Aquilegia oxysepala HOM05D003834 ORTHO05D004483 4.9e-46 188.3 160 60.0
arahy.Tifrunner.gnm1.ann1.08QZGW Arachis hypogaea HOM05D003834 ORTHO05D004483 4.9e-46 188.3 151 65.6
Ca_06377_v3 Cicer arietinum L. HOM05D003834 ORTHO05D004483 6.4e-46 188.0 178 58.4
Thecc.07G019500 Theobroma cacao HOM05D003834 ORTHO05D004483 8.4e-46 187.6 132 72.0
Gohir.D01G073900 Gossypium hirsutum HOM05D003834 ORTHO05D004483 1.1e-45 187.2 175 59.4
LjContig00272g0006391 Lotus japonicus HOM05D003834 ORTHO05D004483 1.1e-45 187.2 177 59.9
Nn1g03233 Nelumbo nucifera HOM05D003834 ORTHO05D004483 1.1e-45 187.2 162 59.9
VMungo0647G1153 Vigna mungo HOM05D003834 ORTHO05D004483 1.1e-45 187.2 174 61.5
ECA236G2134 Erigeron canadensis HOM05D003834 ORTHO05D004483 1.4e-45 186.8 161 62.1
TPR.G14161 Trifolium pratense HOM05D003834 ORTHO05D004483 1.4e-45 186.8 173 60.1
MBI16_g26376_MAGBIO Magnolia biondii HOM05D003834 ORTHO05D004483 3.2e-45 185.7 182 56.6
PSO541G6272 Papaver somniferum HOM05D003834 ORTHO05D004483 3.2e-45 185.7 172 55.8
Gorai.002G097000 Gossypium raimondii HOM05D003834 ORTHO05D004483 4.2e-45 185.3 175 58.9
Sc16g0007940 Simmondsia chinensis HOM05D003834 ORTHO05D004483 4.2e-45 185.3 158 62.7
Gohir.A01G087800 Gossypium hirsutum HOM05D003834 ORTHO05D004483 7.1e-45 184.5 175 58.9
Prupe.4G235000 Prunus persica HOM05D003834 ORTHO05D004483 1.6e-44 183.3 176 56.2
Eucgr.F03700 Eucalyptus grandis HOM05D003834 ORTHO05D004483 3.5e-44 182.2 156 62.8
PSO675G1367 Papaver somniferum HOM05D003834 ORTHO05D004483 3.5e-44 182.2 191 51.8
Thhalv10011303m.g Eutrema salsugineum HOM05D003834 ORTHO05D004483 4.6e-44 181.8 174 54.0
CDE10G0297 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 6.0e-44 181.4 162 56.2
Phvul.008G276000 Phaseolus vulgaris HOM05D003834 ORTHO05D004483 7.9e-44 181.0 175 61.7
FAN16G1958 Fragaria x ananassa HOM05D003834 ORTHO05D004483 1.0e-43 180.6 173 56.6
Ah.04g166460 Amaranthus hybridus HOM05D003834 ORTHO05D004483 1.3e-43 180.3 170 56.5
FAN21G0517 Fragaria x ananassa HOM05D003834 ORTHO05D004483 1.3e-43 180.3 151 62.9
FAN11G3562 Fragaria x ananassa HOM05D003834 ORTHO05D004483 1.8e-43 179.9 173 56.6
FAN25G0041 Fragaria x ananassa HOM05D003834 ORTHO05D004483 1.8e-43 179.9 173 56.6
PGR031G3702 Punica granatum HOM05D003834 ORTHO05D004483 3.0e-43 179.1 173 58.4
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 5.1e-43 178.3 162 55.6
Lj1A793T50 Lonicera japonica HOM05D003834 ORTHO05D004483 5.1e-43 178.3 178 55.6
FAN25G1232 Fragaria x ananassa HOM05D003834 ORTHO05D004483 6.7e-43 177.9 173 56.1
Glyma.02G298200 Glycine max HOM05D003834 ORTHO05D004483 6.7e-43 177.9 175 58.3
AT3G13070 Arabidopsis thaliana HOM05D003834 ORTHO05D004483 8.7e-43 177.6 171 53.8
RcHm_v2.0_Chr5g0042791 Rosa chinensis HOM05D003834 ORTHO05D004483 8.7e-43 177.6 173 56.6
THA.LOC104822741 Tarenaya hassleriana HOM05D003834 ORTHO05D004483 8.7e-43 177.6 163 58.9
AL3G24810 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 1.5e-42 176.8 171 53.8
ATR0712G125 Amborella trichopoda HOM05D003834 ORTHO05D004483 2.5e-42 176.0 159 54.7
Carub.0003s1241 Capsella rubella HOM05D003834 ORTHO05D004483 5.6e-42 174.9 171 53.2
CsaV3_7G018550 Cucumis sativus L. HOM05D003834 ORTHO05D004483 5.6e-42 174.9 176 56.8
Sp1g41540 Schrenkiella parvula HOM05D003834 ORTHO05D004483 7.4e-42 174.5 174 51.1
HanXRQChr11g0333951 Helianthus annuus HOM05D003834 ORTHO05D004483 9.6e-42 174.1 116 71.6
unitig_85.g27343 Utricularia gibba HOM05D003834 ORTHO05D004483 9.6e-42 174.1 159 62.9
AT1G55930 Arabidopsis thaliana HOM05D003834 ORTHO05D004483 1.6e-41 173.3 160 56.2
MELO3C024905.2 Cucumis melo HOM05D003834 ORTHO05D004483 1.6e-41 173.3 176 56.2
EL10Ac4g07610 Beta vulgaris HOM05D003834 ORTHO05D004483 2.8e-41 172.6 168 53.6
Thhalv10020238m.g Eutrema salsugineum HOM05D003834 ORTHO05D004483 2.8e-41 172.6 171 53.2
Carub.0001s4454 Capsella rubella HOM05D003834 ORTHO05D004483 3.7e-41 172.2 160 56.2
Aa31LG8G300 Aethionema arabicum HOM05D003834 ORTHO05D004483 4.8e-41 171.8 178 50.0
BcaC05g29213 Brassica carinata HOM05D003834 ORTHO05D004483 8.2e-41 171.0 170 53.5
C05p54850 Brassica napus HOM05D003834 ORTHO05D004483 8.2e-41 171.0 170 53.5
BolC5t34156H Brassica oleracea HOM05D003834 ORTHO05D004483 8.2e-41 171.0 170 53.5
BraA05t22447Z Brassica rapa HOM05D003834 ORTHO05D004483 8.2e-41 171.0 170 53.5
A05p36450 Brassica napus HOM05D003834 ORTHO05D004483 1.1e-40 170.6 170 53.5
DCAR_012909 Daucus carota HOM05D003834 ORTHO05D004483 1.1e-40 170.6 166 53.6
Gohir.A13G134601 Gossypium hirsutum HOM05D003834 ORTHO05D004483 1.1e-40 170.6 132 68.9
AL1G64090 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 1.4e-40 170.2 160 55.6
BcaB06g25489 Brassica carinata HOM05D003834 ORTHO05D004483 3.1e-40 169.1 170 52.9
ClCG09G021080 Citrullus lanatus HOM05D003834 ORTHO05D004483 3.1e-40 169.1 176 55.1
BcaC01g04008 Brassica carinata HOM05D003834 ORTHO05D004483 9.0e-40 167.5 142 60.6
CARHR087650 Cardamine hirsuta HOM05D003834 ORTHO05D004483 9.0e-40 167.5 171 53.2
Sp3g11240 Schrenkiella parvula HOM05D003834 ORTHO05D004483 1.2e-39 167.2 171 50.9
AUR62017064 Chenopodium quinoa HOM05D003834 ORTHO05D004483 1.5e-39 166.8 170 53.5
Lsat_1_v5_gn_7_113161 Lactuca sativa HOM05D003834 ORTHO05D004483 2.0e-39 166.4 169 55.6
AUR62040651 Chenopodium quinoa HOM05D003834 ORTHO05D004483 4.5e-39 165.2 172 52.9
A03p38030 Brassica napus HOM05D000121 ORTHO05D004483 7.6e-39 164.5 142 59.9
C03p46120 Brassica napus HOM05D003834 ORTHO05D004483 7.6e-39 164.5 142 59.9
BolC3t16884H Brassica oleracea HOM05D003834 ORTHO05D004483 7.6e-39 164.5 142 59.9
BraA03t12955Z Brassica rapa HOM05D003834 ORTHO05D004483 7.6e-39 164.5 142 59.9
Sed0024668 Sechium edule HOM05D003834 ORTHO05D004483 1.0e-38 164.1 174 52.3
Sed0001420 Sechium edule HOM05D003834 ORTHO05D004483 2.9e-38 162.5 172 54.7
HanXRQChr04g0126521 Helianthus annuus HOM05D003834 ORTHO05D004483 1.1e-37 160.6 118 66.1
DCAR_019235 Daucus carota HOM05D003834 ORTHO05D004483 1.4e-37 160.2 148 55.4
Oeu044499.1 Olea europaea HOM05D003834 ORTHO05D004483 2.5e-37 159.5 156 59.6
AL1G64150 Arabidopsis lyrata HOM05D003834 ORTHO05D004483 7.1e-37 157.9 160 53.8
DCAR_012924 Daucus carota HOM05D003834 ORTHO05D004483 3.5e-36 155.6 158 51.9
Dinv05352 Davidia involucrata HOM05D003834 ORTHO05D004483 8.7e-35 151.0 97 72.2
QL08p006267 Quercus lobata HOM05D003834 ORTHO05D004483 1.1e-34 150.6 105 66.7
ECA236G2833 Erigeron canadensis HOM05D003834 ORTHO05D004483 4.8e-33 145.2 160 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3938 Anthoceros agrestis HOM05D003834 ORTHO05D004483 6.3e-33 144.8 123 61.8
Os03g0593200 Oryza sativa ssp. japonica HOM05D003834 ORTHO05D004483 6.3e-33 144.8 151 49.7
SMO367G1292 Selaginella moellendorffii HOM05D003834 ORTHO05D004483 2.4e-32 142.9 117 60.7
Actinidia00091 Actinidia chinensis HOM05D003834 ORTHO05D004483 3.1e-32 142.5 123 60.2
Zm00001eb049810 Zea mays HOM05D003834 ORTHO05D004483 1.2e-31 140.6 136 51.5
Lsat_1_v5_gn_7_95440 Lactuca sativa HOM05D003834 ORTHO05D004483 7.6e-31 137.9 112 58.0
SEGI_18466 Sequoiadendron giganteum HOM05D003834 ORTHO05D004483 1.7e-30 136.7 121 57.0
FvH4_3g24130 Fragaria vesca HOM05D003834 ORTHO05D004483 2.9e-30 136.0 97 67.0
Pp3c2_3830 Physcomitrium patens HOM05D003834 ORTHO05D004483 2.5e-29 132.9 173 44.5
Pp3c1_38160 Physcomitrium patens HOM05D003834 ORTHO05D004483 7.2e-29 131.3 120 57.5
Mapoly0112s0016 Marchantia polymorpha HOM05D003834 ORTHO05D004483 6.1e-28 128.3 149 51.0
HPP92_024890 Vanilla planifolia HOM05D003834 ORTHO05D004483 6.1e-28 128.3 156 48.1
Pp3c10_7850 Physcomitrium patens HOM05D003834 ORTHO05D004483 1.8e-27 126.7 121 54.5
Lj6g0012228 Lotus japonicus HOM05D003834 ORTHO05D004483 1.7e-25 120.2 97 63.9
Lj6g0000188 Lotus japonicus HOM05D000121 ORTHO05D000102 2.8e-25 119.4 97 63.9
CBR_g22294 Chara braunii HOM05D003834 ORTHO05D004483 2.2e-22 109.8 144 41.0
arahy.Tifrunner.gnm1.ann1.UPI3MA Arachis hypogaea HOM05D003834 ORTHO05D004483 1.6e-12 77.0 113 44.2
CiPaw.11G201400 Carya illinoinensis HOM05D003834 ORTHO05D004483 8.0e-12 74.7 48 77.1
RcHm_v2.0_Chr5g0043091 Rosa chinensis HOM05D003834 ORTHO05D004483 1.7e-09 67.0 35 82.9


User provided reference genes

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