Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 1.4e-100 369.8 205 100.0
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 1.2e-56 223.8 208 67.3
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 2.8e-37 159.5 206 52.4
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 5.3e-36 155.2 176 56.2
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 3.6e-32 142.5 175 55.4
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 6.7e-31 138.3 187 53.5
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 1.2e-30 137.5 178 48.9
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 2.0e-30 136.7 95 71.6
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 2.6e-30 136.3 113 68.1
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 2.6e-30 136.3 125 62.4
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 4.4e-30 135.6 88 72.7
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 5.7e-30 135.2 153 51.6
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 1.3e-29 134.0 148 51.4
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 2.2e-29 133.3 169 49.7
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 3.7e-29 132.5 194 44.3
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 4.8e-29 132.1 70 84.3
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 6.3e-29 131.7 205 44.9
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 8.2e-29 131.3 178 48.9
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 1.1e-28 131.0 132 56.1
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 1.8e-28 130.2 156 50.0
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 1.8e-28 130.2 83 73.5
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 2.4e-28 129.8 197 47.7
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 2.4e-28 129.8 114 63.2
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 3.1e-28 129.4 109 62.4
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 4.1e-28 129.0 93 65.6
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 5.3e-28 128.6 91 70.3
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 5.3e-28 128.6 189 43.9
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 7.0e-28 128.3 177 50.8
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 9.1e-28 127.9 92 66.3
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 1.2e-27 127.5 141 51.1
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 2.0e-27 126.7 210 41.4
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 2.0e-27 126.7 166 53.0
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 2.0e-27 126.7 130 52.3
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 2.0e-27 126.7 162 50.6
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 2.7e-27 126.3 93 62.4
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 2.7e-27 126.3 93 66.7
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 3.5e-27 125.9 138 52.2
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 3.5e-27 125.9 91 63.7
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 4.5e-27 125.6 144 50.0
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 4.5e-27 125.6 90 65.6
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 5.9e-27 125.2 96 68.8
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 5.9e-27 125.2 210 47.6
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 5.9e-27 125.2 109 61.5
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 7.7e-27 124.8 149 53.7
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 7.7e-27 124.8 80 71.2
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 1.0e-26 124.4 70 78.6
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.0e-26 124.4 107 64.5
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 1.0e-26 124.4 135 52.6
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 1.7e-26 123.6 76 73.7
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 1.7e-26 123.6 171 46.8
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 1.7e-26 123.6 141 53.2
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.7e-26 123.6 115 57.4
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 3.8e-26 122.5 194 45.9
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 5.0e-26 122.1 208 44.7
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 5.0e-26 122.1 154 46.8
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 5.0e-26 122.1 92 68.5
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 8.5e-26 121.3 113 58.4
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 8.5e-26 121.3 102 60.8
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 8.5e-26 121.3 88 63.6
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 8.5e-26 121.3 139 50.4
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 1.1e-25 120.9 149 49.7
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 1.1e-25 120.9 151 46.4
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 1.1e-25 120.9 151 46.4
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 1.1e-25 120.9 166 49.4
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 1.9e-25 120.2 98 61.2
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 1.9e-25 120.2 98 61.2
SalBow8G1689 Salvia bowleyana HOM05D003879 ORTHO05D003858 1.9e-25 120.2 203 45.8
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 2.5e-25 119.8 132 47.7
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 2.5e-25 119.8 81 65.4
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 2.5e-25 119.8 184 45.7
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 3.2e-25 119.4 124 52.4
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 3.2e-25 119.4 93 58.1
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 4.2e-25 119.0 91 70.3
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 4.2e-25 119.0 170 44.7
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 7.2e-25 118.2 193 43.5
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 9.4e-25 117.9 108 57.4
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 9.4e-25 117.9 208 43.8
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 9.4e-25 117.9 75 69.3
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 9.4e-25 117.9 169 45.0
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 9.4e-25 117.9 146 52.1
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 1.2e-24 117.5 157 46.5
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 1.2e-24 117.5 127 52.0
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 1.6e-24 117.1 76 69.7
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 1.6e-24 117.1 136 47.8
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 1.6e-24 117.1 141 51.1
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 1.6e-24 117.1 96 59.4
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 2.1e-24 116.7 144 50.7
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 2.1e-24 116.7 147 53.7
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 2.1e-24 116.7 137 51.8
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 2.1e-24 116.7 120 55.0
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 6.1e-24 115.2 73 68.5
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 1.0e-23 114.4 157 45.9
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 1.4e-23 114.0 77 64.9
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 1.8e-23 113.6 150 48.0
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 2.3e-23 113.2 139 49.6
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 3.0e-23 112.8 123 49.6
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 4.0e-23 112.5 156 46.8
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 5.2e-23 112.1 169 47.3
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.2e-22 110.9 161 42.2
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 1.2e-22 110.9 196 44.4
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.2e-22 110.9 197 41.1
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 2.0e-22 110.2 162 40.7
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 2.6e-22 109.8 225 42.2
Nitab4.5_0000014g0130 Nicotiana tabacum HOM05D003879 ORTHO05D003858 2.6e-22 109.8 170 44.1
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 5.7e-22 108.6 88 59.1
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 5.7e-22 108.6 89 59.6
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 5.7e-22 108.6 110 54.5
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 5.7e-22 108.6 140 49.3
PSO017G6566 Papaver somniferum HOM05D003879 ORTHO05D003858 7.5e-22 108.2 85 63.5
PSO478G4561 Papaver somniferum HOM05D003879 ORTHO05D003858 7.5e-22 108.2 85 63.5
Aqoxy5G03435 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 9.8e-22 107.8 216 39.8
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 1.3e-21 107.5 67 71.6
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 1.3e-21 107.5 81 60.5
Potri.013G109100 Populus trichocarpa HOM05D003879 ORTHO05D003858 2.2e-21 106.7 90 57.8
Sabra19G0093000 Salix brachista HOM05D003879 ORTHO05D003858 8.3e-21 104.8 136 48.5
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 1.1e-20 104.4 195 39.5
CiPaw.07G072500 Carya illinoinensis HOM05D003879 ORTHO05D003858 1.1e-20 104.4 210 38.1
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 2.4e-20 103.2 152 48.0
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 3.1e-20 102.8 158 39.9
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 4.1e-20 102.4 193 43.0
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 4.1e-20 102.4 193 43.0
SalBow1G6087 Salvia bowleyana HOM05D003879 ORTHO05D003858 4.1e-20 102.4 95 60.0
SalBow6G3484 Salvia bowleyana HOM05D003879 ORTHO05D003858 4.1e-20 102.4 95 60.0
SalBow6G4156 Salvia bowleyana HOM05D003879 ORTHO05D003858 4.1e-20 102.4 95 60.0
SalBow8G1644 Salvia bowleyana HOM05D003879 ORTHO05D003858 4.1e-20 102.4 95 60.0
BcaB08g34355 Brassica carinata HOM05D003879 ORTHO05D003858 7.0e-20 101.7 98 51.0
BcaB08g34356 Brassica carinata HOM05D003879 ORTHO05D003858 7.0e-20 101.7 98 51.0
BcaB08g34363 Brassica carinata HOM05D003879 ORTHO05D003858 7.0e-20 101.7 98 51.0
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 7.0e-20 101.7 140 46.4
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 9.1e-20 101.3 121 49.6
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.2e-19 100.9 147 44.9
BcaB08g34362 Brassica carinata HOM05D003879 ORTHO05D003858 2.0e-19 100.1 92 53.3
AUR62005832 Chenopodium quinoa HOM05D003879 ORTHO05D003858 2.0e-19 100.1 86 59.3
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 2.0e-19 100.1 85 55.3
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 2.0e-19 100.1 166 42.2
Os07g0158400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 2.7e-19 99.8 97 52.6
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 4.5e-19 99.0 194 40.7
AUR62032825 Chenopodium quinoa HOM05D000508 ORTHO05D000371 5.9e-19 98.6 86 59.3
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 5.9e-19 98.6 192 38.0
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 5.9e-19 98.6 108 47.2
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 1.0e-18 97.8 156 42.3
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 1.0e-18 97.8 151 47.0
BcaB08g34365 Brassica carinata HOM05D003879 ORTHO05D003858 1.7e-18 97.1 91 53.8
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 1.7e-18 97.1 166 39.2
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 1.7e-18 97.1 166 39.2
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 2.9e-18 96.3 114 44.7
Rhsim05G0092100 Rhododendron simsii HOM05D003879 ORTHO05D003858 6.5e-18 95.1 138 47.1
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 8.6e-18 94.7 156 39.1
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 4.2e-17 92.4 90 52.2
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 9.5e-17 91.3 102 51.0
Lj6C784G16 Lonicera japonica HOM05D000508 ORTHO05D006805 1.0e-15 87.8 68 58.8
Carub.0001s1374 Capsella rubella HOM05D003879 ORTHO05D003858 1.4e-15 87.4 72 52.8
A09p62510 Brassica napus HOM05D003879 ORTHO05D003858 1.8e-15 87.0 158 40.5
Pp3c16_17450 Physcomitrium patens HOM05D003879 ORTHO05D003858 4.0e-15 85.9 122 45.1
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 4.4e-14 82.4 175 37.1
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 7.0e-12 75.1 135 35.6
CBR_g26201 Chara braunii HOM05D003879 ORTHO05D003858 7.0e-12 75.1 143 35.0
Mapoly0084s0083 Marchantia polymorpha HOM05D003879 ORTHO05D003858 9.2e-12 74.7 198 36.9
MCO14G435 Micromonas commoda HOM05D003879 ORTHO05D003858 3.5e-11 72.8 67 52.2
CARHR014440 Cardamine hirsuta HOM05D003879 ORTHO05D003858 4.5e-11 72.4 78 46.2
AL1G25890 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 1.0e-10 71.2 68 47.1
FvH4_5g26420 Fragaria vesca HOM05D003879 ORTHO05D003858 1.1e-09 67.8 127 37.0
FAN13G1900 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.1e-09 67.8 127 37.0
FAN18G4377 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.1e-09 67.8 127 37.0
Carub.0004s2200 Capsella rubella HOM05D003879 ORTHO05D003858 4.3e-09 65.9 71 46.5
AL6G11440 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 3.6e-08 62.8 75 46.7
AT5G57640 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 8.0e-08 61.6 81 43.2
AL1G25910 Arabidopsis lyrata HOM05D011464 ORTHO05D003858 1.0e-07 61.2 100 37.0
CARHR014430 Cardamine hirsuta HOM05D003879 ORTHO05D003858 1.0e-07 61.2 69 44.9
Cre14.g619950 Chlamydomonas reinhardtii HOM05D003879 ORTHO05D003858 1.4e-07 60.8 116 37.1
Sp1g12000 Schrenkiella parvula HOM05D011464 ORTHO05D003858 3.0e-07 59.7 82 40.2
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 4.0e-07 59.3 149 35.6
SpUn0238_0010 Schrenkiella parvula HOM05D011464 ORTHO05D014025 6.8e-07 58.5 97 41.2
C08p16700 Brassica napus HOM05D015260 ORTHO05D003858 2.0e-06 57.0 72 37.5
Lj5g0017481 Lotus japonicus HOM05D003879 ORTHO05D003858 2.0e-06 57.0 49 57.1
BcaC04g19944 Brassica carinata HOM05D015339 ORTHO05D003858 3.4e-06 56.2 106 33.0
BolC9t57805H Brassica oleracea HOM05D015339 ORTHO05D003858 3.4e-06 56.2 106 33.0
AT5G57570 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 4.4e-06 55.8 112 36.6
BcaB08g36120 Brassica carinata HOM05D015339 ORTHO05D003858 5.7e-06 55.5 101 33.7
A09p52500 Brassica napus HOM05D003879 ORTHO05D003858 9.8e-06 54.7 67 41.8
C09p49520 Brassica napus HOM05D015339 ORTHO05D003858 9.8e-06 54.7 100 34.0


User provided reference genes

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