Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 4.6e-112 407.9 206 100.0
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 4.8e-53 211.8 216 58.3
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.0e-50 204.1 218 54.1
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.1e-48 196.4 225 55.6
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 9.7e-46 187.6 218 52.3
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.1e-44 184.1 220 50.0
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.1e-44 182.6 218 50.0
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.7e-43 179.5 217 51.2
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 2.5e-41 172.9 218 50.0
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 3.2e-41 172.6 219 49.8
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 3.2e-41 172.6 215 49.3
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 9.4e-41 171.0 212 51.9
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.6e-40 170.2 224 49.6
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 1.8e-39 166.8 221 49.3
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.8e-39 166.8 218 46.3
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 2.3e-39 166.4 232 45.3
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.3e-39 166.4 219 48.9
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 3.0e-39 166.0 225 48.0
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 3.0e-39 166.0 218 46.8
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.0e-39 166.0 202 50.0
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.0e-39 166.0 202 50.0
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 3.0e-39 166.0 196 50.5
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.5e-38 163.7 220 45.9
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 2.0e-38 163.3 221 47.5
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.6e-38 162.9 186 57.0
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.4e-38 162.5 214 48.1
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 5.7e-38 161.8 214 48.1
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 9.8e-38 161.0 218 46.8
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 9.8e-38 161.0 213 49.3
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.3e-37 160.6 220 46.4
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.7e-37 160.2 220 46.4
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 2.8e-37 159.5 218 43.1
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.8e-37 159.5 206 47.6
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.1e-36 157.5 178 55.6
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.4e-36 157.1 201 48.3
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.4e-36 157.1 211 47.9
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.8e-36 156.8 186 51.6
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.8e-36 156.8 198 46.5
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.4e-36 156.4 226 45.6
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 2.4e-36 156.4 214 47.2
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.1e-36 155.6 211 46.9
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 5.4e-36 155.2 226 44.7
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 7.0e-36 154.8 173 55.5
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.0e-36 154.8 211 47.9
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.0e-35 153.3 232 43.1
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 2.7e-35 152.9 230 45.2
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.5e-35 152.5 227 44.5
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 5.9e-35 151.8 219 43.8
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 7.7e-35 151.4 201 49.3
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 7.7e-35 151.4 188 48.9
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.0e-34 151.0 187 49.2
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.7e-34 150.2 193 45.1
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.7e-34 150.2 226 43.8
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.7e-34 150.2 226 43.8
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.7e-34 150.2 226 43.8
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.9e-34 149.4 226 42.0
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.9e-34 149.4 194 44.8
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.9e-34 149.4 219 42.5
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.9e-34 149.4 219 42.5
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 3.8e-34 149.1 181 47.0
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 6.5e-34 148.3 208 47.1
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 6.5e-34 148.3 216 45.8
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 8.6e-34 147.9 189 51.3
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 8.6e-34 147.9 197 48.2
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.5e-33 147.1 177 53.1
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.9e-33 146.7 203 43.3
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 3.3e-33 146.0 208 47.6
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 7.2e-33 144.8 186 51.6
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 1.6e-32 143.7 223 41.3
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 3.6e-32 142.5 188 48.4
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 6.1e-32 141.7 207 43.5
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.0e-31 141.0 187 47.6
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.0e-31 141.0 205 46.8
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.0e-31 141.0 212 45.3
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.8e-31 140.2 187 46.5
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 4.0e-31 139.0 213 43.7
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 4.0e-31 139.0 189 52.4
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 6.8e-31 138.3 187 46.5
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 8.9e-31 137.9 191 47.1
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 3.4e-30 136.0 211 45.0
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 5.7e-30 135.2 192 46.4
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 7.5e-30 134.8 192 42.2
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 9.8e-30 134.4 187 47.1
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.3e-29 134.0 216 41.7
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.7e-29 133.7 207 44.4
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.7e-29 133.7 224 43.3
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 2.2e-29 133.3 215 43.3
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 2.2e-29 133.3 190 45.3
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 2.2e-29 133.3 216 42.6
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 2.2e-29 133.3 219 41.1
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 2.8e-29 132.9 177 48.0
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 3.7e-29 132.5 181 46.4
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 3.7e-29 132.5 246 39.4
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.9e-29 132.1 163 49.7
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 8.3e-29 131.3 175 46.3
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 8.3e-29 131.3 185 44.9
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 8.3e-29 131.3 190 44.2
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 8.3e-29 131.3 214 42.1
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.4e-28 130.6 186 45.2
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.4e-28 130.6 233 40.8
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.8e-28 130.2 185 44.9
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 3.1e-28 129.4 191 44.5
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 5.4e-28 128.6 178 43.8
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 5.4e-28 128.6 198 43.4
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 7.0e-28 128.3 190 43.7
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 7.0e-28 128.3 201 44.8
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 9.2e-28 127.9 180 46.1
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 2.0e-27 126.7 183 45.9
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 4.5e-27 125.6 175 44.6
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 4.5e-27 125.6 191 41.9
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 4.5e-27 125.6 204 45.1
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 5.9e-27 125.2 206 42.7
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.3e-26 124.0 175 45.1
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 1.7e-26 123.6 183 42.6
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.3e-26 123.2 212 39.6
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 2.3e-26 123.2 191 45.0
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.3e-26 123.2 189 42.3
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.9e-26 122.9 187 43.3
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 2.9e-26 122.9 225 39.6
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 5.0e-26 122.1 220 40.0
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 8.6e-26 121.3 221 40.3
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-25 120.9 207 42.0
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-25 120.6 168 45.2
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 2.5e-25 119.8 185 42.7
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.5e-25 119.8 157 44.6
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 3.3e-25 119.4 175 42.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.3e-25 119.0 180 45.6
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.3e-25 119.0 180 44.4
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 4.3e-25 119.0 193 42.0
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 7.3e-25 118.2 180 43.9
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 9.5e-25 117.9 199 41.7
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.2e-24 117.5 148 48.0
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.2e-24 117.5 208 41.3
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 1.6e-24 117.1 190 41.1
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.6e-24 117.1 177 44.6
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 2.1e-24 116.7 218 38.5
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 2.8e-24 116.3 186 39.8
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.7e-24 115.5 192 42.2
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 8.0e-24 114.8 203 39.9
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.0e-23 114.4 177 42.4
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.4e-23 114.0 123 51.2
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.4e-23 114.0 204 42.6
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 5.2e-23 112.1 220 38.2
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 5.2e-23 112.1 191 41.4
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 5.2e-23 112.1 127 54.3
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 5.2e-23 112.1 201 38.8
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-22 110.9 178 41.0
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-22 110.9 191 40.8
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 9.8e-22 107.8 152 44.1
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 6.4e-21 105.1 159 42.1
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.1e-20 104.4 190 42.1
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 5.4e-20 102.1 174 44.3
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 9.2e-20 101.3 118 50.8
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-19 100.9 198 37.9
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.2e-19 100.9 198 37.9
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.6e-19 100.5 199 37.7
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 6.0e-19 98.6 164 40.2
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 1.0e-18 97.8 178 41.6
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.3e-18 97.4 280 32.1
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.7e-18 97.1 187 37.4
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 6.6e-18 95.1 181 38.1
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.1e-17 94.4 181 37.6
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.5e-17 94.0 187 36.9
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 3.3e-17 92.8 187 36.4
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 7.3e-17 91.7 185 36.2
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 7.3e-17 91.7 189 37.6
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 1.2e-16 90.9 181 37.6
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.6e-16 89.4 125 47.2
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.7e-16 89.0 183 39.9
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 4.7e-16 89.0 150 38.7
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 4.7e-16 89.0 110 47.3
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-15 87.8 181 37.0
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.4e-15 87.4 142 40.8
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.0e-14 83.6 146 39.7
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.8e-14 82.0 118 44.1
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.5e-14 81.6 108 46.3
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.9e-13 79.7 174 37.9
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.7e-11 73.2 175 30.3
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.0e-10 69.7 64 56.2
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 3.9e-10 69.3 98 43.9
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.5e-09 67.4 175 29.7
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 1.5e-09 67.4 211 31.8
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 9.5e-09 64.7 154 34.4
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 9.5e-09 64.7 74 51.4
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 2.3e-07 60.1 127 35.4


User provided reference genes

Program Settings