Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold453G51858 Striga asiatica HOM05D004166 ORTHO05D004992 4.7e-55 217.6 110 100.0
SGA_v2.0_scaffold202G41461 Striga asiatica HOM05D004166 ORTHO05D004992 9.0e-14 80.5 45 82.2
SalBow1G3711 Salvia bowleyana HOM05D004166 ORTHO05D004992 4.9e-12 74.7 64 56.2
Hma1.2p1_0621F.1_g190840 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 7.1e-11 70.9 59 59.3
SalBow1G3538 Salvia bowleyana HOM05D004166 ORTHO05D004992 9.3e-11 70.5 61 55.7
Manes.09G026700 Manihot esculenta HOM05D004166 ORTHO05D004992 1.2e-10 70.1 59 59.3
HanXRQChr13g0390681 Helianthus annuus HOM05D004166 ORTHO05D004992 1.6e-10 69.7 60 58.3
Psat4g147280 Pisum sativum HOM05D004166 ORTHO05D004992 2.1e-10 69.3 59 54.2
Cc06_g16690 Coffea canephora HOM05D004166 ORTHO05D004992 2.7e-10 68.9 59 57.6
TPR.G1880 Trifolium pratense HOM05D004166 ORTHO05D004992 2.7e-10 68.9 59 54.2
Medtr8g036790 Medicago truncatula HOM05D004166 ORTHO05D004992 3.5e-10 68.6 59 54.2
Glyma.12G237600 Glycine max HOM05D004166 ORTHO05D004992 4.6e-10 68.2 58 55.2
MD14G1068000 Malus domestica HOM05D004166 ORTHO05D004992 6.0e-10 67.8 59 59.3
QL07p021398 Quercus lobata HOM05D004166 ORTHO05D004992 6.0e-10 67.8 59 55.9
Manes.10G143600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.0e-09 67.0 58 58.6
Prupe.2G012500 Prunus persica HOM05D004166 ORTHO05D004992 1.0e-09 67.0 51 60.8
CSS0023235 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.3e-09 66.6 57 57.9
COL.COLO4_28154 Corchorus olitorius HOM05D004166 ORTHO05D004992 1.3e-09 66.6 57 56.1
Dinv24131 Davidia involucrata HOM05D004166 ORTHO05D004992 1.3e-09 66.6 59 57.6
Gohir.A01G196400 Gossypium hirsutum HOM05D004166 ORTHO05D004992 1.3e-09 66.6 57 56.1
Gorai.002G230100 Gossypium raimondii HOM05D004166 ORTHO05D004992 1.3e-09 66.6 57 56.1
Nn2g15481 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.3e-09 66.6 59 54.2
Nn2g15482 Nelumbo nucifera HOM05D004166 ORTHO05D004992 1.3e-09 66.6 59 54.2
Thecc.01G411400 Theobroma cacao HOM05D004166 ORTHO05D004992 1.3e-09 66.6 58 56.9
CSS0000300 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.7e-09 66.2 57 57.9
CSS0007311 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 1.7e-09 66.2 57 57.9
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 1.7e-09 66.2 112 42.0
Eucgr.A02389 Eucalyptus grandis HOM05D004166 ORTHO05D004992 1.7e-09 66.2 57 59.6
Lj3g0024132 Lotus japonicus HOM05D004166 ORTHO05D004992 1.7e-09 66.2 57 54.4
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 1.7e-09 66.2 57 54.4
Glyma.13G203200 Glycine max HOM05D004166 ORTHO05D004992 2.3e-09 65.9 58 53.4
Gohir.A08G144700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 2.3e-09 65.9 58 55.2
COL.COLO4_23931 Corchorus olitorius HOM05D004166 ORTHO05D004992 3.0e-09 65.5 58 55.2
Manes.08G048600 Manihot esculenta HOM05D004166 ORTHO05D004992 3.0e-09 65.5 59 55.9
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 3.0e-09 65.5 59 52.5
CSS0009527 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.9e-09 65.1 56 57.1
CSS0050097 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 3.9e-09 65.1 56 57.1
Duzib093G1037 Durio zibethinus HOM05D004166 ORTHO05D004992 3.9e-09 65.1 57 56.1
Gohir.D01G186700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 3.9e-09 65.1 57 54.4
arahy.Tifrunner.gnm1.ann1.H3MDMT Arachis hypogaea HOM05D004166 ORTHO05D004992 5.1e-09 64.7 57 52.6
arahy.Tifrunner.gnm1.ann1.UUFG8W Arachis hypogaea HOM05D004166 ORTHO05D004992 5.1e-09 64.7 57 52.6
CSS0020291 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.1e-09 64.7 59 54.2
CSS0041805 Camellia sinensis var. sinensis HOM05D004166 ORTHO05D004992 5.1e-09 64.7 59 54.2
CiPaw.10G031600 Carya illinoinensis HOM05D004166 ORTHO05D004992 5.1e-09 64.7 75 49.3
Gohir.D08G165700 Gossypium hirsutum HOM05D004166 ORTHO05D004992 5.1e-09 64.7 58 55.2
Gorai.004G172800 Gossypium raimondii HOM05D004166 ORTHO05D004992 5.1e-09 64.7 58 55.2
Phvul.011G212050 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 5.1e-09 64.7 58 53.4
CiPaw.09G035600 Carya illinoinensis HOM05D004166 ORTHO05D004992 6.6e-09 64.3 59 54.2
Cfa016852 Carpinus fangiana HOM05D004166 ORTHO05D004992 8.7e-09 63.9 59 52.5
Eucgr.J01270 Eucalyptus grandis HOM05D004166 ORTHO05D004992 8.7e-09 63.9 58 55.2
FAN06G0104 Fragaria x ananassa HOM05D004166 ORTHO05D004992 8.7e-09 63.9 51 56.9
FAN10G3917 Fragaria x ananassa HOM05D004166 ORTHO05D004992 8.7e-09 63.9 51 56.9
Lalb_Chr03g0034051 Lupinus albus HOM05D004166 ORTHO05D004992 8.7e-09 63.9 51 58.8
Ciclev10006904m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.1e-08 63.5 57 57.9
FAN03G1620 Fragaria x ananassa HOM05D004166 ORTHO05D004992 1.1e-08 63.5 51 56.9
MD12G1067900 Malus domestica HOM05D004166 ORTHO05D004992 1.1e-08 63.5 62 54.8
Potri.001G267501 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.1e-08 63.5 58 55.2
Cfa010755 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.5e-08 63.2 58 53.4
Duzib268G1417 Durio zibethinus HOM05D004166 ORTHO05D004992 1.5e-08 63.2 58 53.4
Manes.07G005600 Manihot esculenta HOM05D004166 ORTHO05D004992 1.5e-08 63.2 58 53.4
Potri.016G053400 Populus trichocarpa HOM05D004166 ORTHO05D004992 1.5e-08 63.2 56 57.1
RcHm_v2.0_Chr1g0315891 Rosa chinensis HOM05D004166 ORTHO05D004992 1.5e-08 63.2 50 56.0
Actinidia17245 Actinidia chinensis HOM05D004166 ORTHO05D004992 1.9e-08 62.8 59 55.9
Ciclev10033564m.g Citrus clementina HOM05D004166 ORTHO05D004992 1.9e-08 62.8 58 53.4
HanXRQChr01g0008671 Helianthus annuus HOM05D004166 ORTHO05D004992 2.5e-08 62.4 60 55.0
MD07G1010200 Malus domestica HOM05D004166 ORTHO05D004992 2.5e-08 62.4 51 54.9
MBI01_g18886_MAGBIO Magnolia biondii HOM05D004166 ORTHO05D004992 3.3e-08 62.0 59 49.2
MD02G1312900 Malus domestica HOM05D004166 ORTHO05D004992 3.3e-08 62.0 51 54.9
Potri.009G061800 Populus trichocarpa HOM05D004166 ORTHO05D004992 3.3e-08 62.0 58 53.4
Sabra09G0045800 Salix brachista HOM05D004166 ORTHO05D004992 3.3e-08 62.0 58 53.4
ClCG04G000820 Citrullus lanatus HOM05D004166 ORTHO05D004992 4.3e-08 61.6 57 54.4
Lsat_1_v5_gn_5_162620 Lactuca sativa HOM05D004166 ORTHO05D004992 4.3e-08 61.6 60 55.0
QL04p006695 Quercus lobata HOM05D004166 ORTHO05D004992 4.3e-08 61.6 58 51.7
QL04p007896 Quercus lobata HOM05D004166 ORTHO05D004992 4.3e-08 61.6 58 51.7
RcHm_v2.0_Chr3g0481271 Rosa chinensis HOM05D004166 ORTHO05D004992 4.3e-08 61.6 56 50.0
Sed0018203 Sechium edule HOM05D004166 ORTHO05D004992 4.3e-08 61.6 57 56.1
TAR633G2178 Trochodendron aralioides HOM05D004166 ORTHO05D004992 4.3e-08 61.6 62 50.0
Migut.J01778 Erythranthe guttata HOM05D004166 ORTHO05D004992 5.6e-08 61.2 52 59.6
HanXRQChr16g0524541 Helianthus annuus HOM05D004166 ORTHO05D004992 5.6e-08 61.2 58 50.0
Hma1.2p1_0293F.1_g116190 Hydrangea macrophylla HOM05D004166 ORTHO05D004992 5.6e-08 61.2 51 58.8
Lalb_Chr01g0008061 Lupinus albus HOM05D004166 ORTHO05D004992 5.6e-08 61.2 50 56.0
Sc11g0009220 Simmondsia chinensis HOM05D004166 ORTHO05D004992 5.6e-08 61.2 59 47.5
Aa31LG10G7180 Aethionema arabicum HOM05D004166 ORTHO05D004992 7.3e-08 60.8 58 51.7
Sed0019909 Sechium edule HOM05D004166 ORTHO05D004992 7.3e-08 60.8 51 54.9
CAN.G1820.4 Capsicum annuum HOM05D004166 ORTHO05D004992 9.6e-08 60.5 59 50.8
ClCG10G012440 Citrullus lanatus HOM05D004166 ORTHO05D004992 9.6e-08 60.5 51 52.9
TAR623G1417 Trochodendron aralioides HOM05D004166 ORTHO05D004992 9.6e-08 60.5 70 48.6
Ah.13g076280 Amaranthus hybridus HOM05D004166 ORTHO05D004992 1.3e-07 60.1 57 52.6
CsaV3_3G032210 Cucumis sativus L. HOM05D004166 ORTHO05D004992 1.3e-07 60.1 51 52.9
HanXRQChr17g0562911 Helianthus annuus HOM05D004166 ORTHO05D004992 1.3e-07 60.1 58 46.6
Prupe.7G066300 Prunus persica HOM05D004166 ORTHO05D004992 1.3e-07 60.1 59 50.8
Sc13g0001900 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.3e-07 60.1 59 54.2
unitig_699.g19651 Utricularia gibba HOM05D004166 ORTHO05D004992 1.3e-07 60.1 52 53.8
BcaB02g08588 Brassica carinata HOM05D004166 ORTHO05D004992 1.6e-07 59.7 68 47.1
BraA04t16423Z Brassica rapa HOM05D004166 ORTHO05D004992 1.6e-07 59.7 58 50.0
BcaC02g09282 Brassica carinata HOM05D004166 ORTHO05D004992 2.1e-07 59.3 58 50.0
A03p48710 Brassica napus HOM05D004166 ORTHO05D004992 2.1e-07 59.3 70 47.1
C04p40870 Brassica napus HOM05D004166 ORTHO05D004992 2.1e-07 59.3 58 50.0
BolC4t25673H Brassica oleracea HOM05D004166 ORTHO05D004992 2.1e-07 59.3 58 50.0
Carub.0005s1843 Capsella rubella HOM05D004166 ORTHO05D004992 2.1e-07 59.3 66 47.0
AUR62024406 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.1e-07 59.3 57 50.9
AUR62025999 Chenopodium quinoa HOM05D004166 ORTHO05D004992 2.1e-07 59.3 57 50.9
CsaV3_4G031350 Cucumis sativus L. HOM05D004166 ORTHO05D004992 2.1e-07 59.3 57 54.4
CARHR161830 Cardamine hirsuta HOM05D004166 ORTHO05D004992 2.8e-07 58.9 58 50.0
FAN02G1185 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.8e-07 58.9 56 46.4
Medtr7g092170 Medicago truncatula HOM05D004166 ORTHO05D004992 2.8e-07 58.9 57 50.9
AL5G32660 Arabidopsis lyrata HOM05D004166 ORTHO05D004992 3.6e-07 58.5 58 48.3
Thhalv10011065m.g Eutrema salsugineum HOM05D004166 ORTHO05D004992 3.6e-07 58.5 58 48.3
Glyma.08G155100 Glycine max HOM05D004166 ORTHO05D004992 3.6e-07 58.5 59 49.2
Glyma.15G273800 Glycine max HOM05D004166 ORTHO05D004992 3.6e-07 58.5 59 49.2
AT3G52105 Arabidopsis thaliana HOM05D004166 ORTHO05D004992 4.8e-07 58.2 58 50.0
Migut.B01024 Erythranthe guttata HOM05D004166 ORTHO05D004992 4.8e-07 58.2 57 49.1
Lsat_1_v5_gn_4_31680 Lactuca sativa HOM05D004166 ORTHO05D004992 4.8e-07 58.2 53 50.9
Sp5g10190 Schrenkiella parvula HOM05D004166 ORTHO05D004992 4.8e-07 58.2 58 50.0
Migut.B01304 Erythranthe guttata HOM05D004166 ORTHO05D004992 6.2e-07 57.8 57 47.4
Phvul.005G020900 Phaseolus vulgaris HOM05D004166 ORTHO05D004992 6.2e-07 57.8 59 50.8
Cfa010754 Carpinus fangiana HOM05D004166 ORTHO05D004992 1.1e-06 57.0 58 48.3
SalBow5G4904 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.4e-06 56.6 57 43.9
SalBow8G3607 Salvia bowleyana HOM05D004166 ORTHO05D004992 1.4e-06 56.6 57 43.9
Sc25g0005250 Simmondsia chinensis HOM05D004166 ORTHO05D004992 1.4e-06 56.6 59 49.2
SGA_v2.0_scaffold20G08962 Striga asiatica HOM05D004166 ORTHO05D399792 1.4e-06 56.6 48 60.4
FAN09G2989 Fragaria x ananassa HOM05D004166 ORTHO05D004992 2.4e-06 55.8 54 44.4
MD17G1247100 Malus domestica HOM05D004166 ORTHO05D004992 2.4e-06 55.8 51 49.0
HPP92_024883 Vanilla planifolia HOM05D004166 ORTHO05D004992 2.4e-06 55.8 59 49.2
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 3.1e-06 55.5 55 49.1
Lsat_1_v5_gn_1_107381 Lactuca sativa HOM05D004166 ORTHO05D004992 3.1e-06 55.5 58 46.6
Os03g0174800 Oryza sativa ssp. japonica HOM05D004166 ORTHO05D004992 3.1e-06 55.5 59 45.8
Lalb_Chr20g0110831 Lupinus albus HOM05D004166 ORTHO05D004992 4.0e-06 55.1 57 47.4
C07p46800 Brassica napus HOM05D004166 ORTHO05D004992 6.9e-06 54.3 55 47.3
BolC7t45197H Brassica oleracea HOM05D004166 ORTHO05D004992 6.9e-06 54.3 55 47.3
SGA_v2.0_scaffold94G28464 Striga asiatica HOM05D004166 ORTHO05D404286 6.9e-06 54.3 31 87.1
Zm00001eb402020 Zea mays HOM05D004166 ORTHO05D004992 6.9e-06 54.3 59 44.1
Atru.chr11.2657 Acer truncatum HOM05D004166 ORTHO05D004992 9.0e-06 53.9 50 52.0
Glyma.03G138700 Glycine max HOM05D004166 ORTHO05D004992 9.0e-06 53.9 57 47.4
Lalb_Chr01g0017501 Lupinus albus HOM05D004166 ORTHO05D004992 9.0e-06 53.9 56 46.4
Sc14g0005090 Simmondsia chinensis HOM05D004166 ORTHO05D004992 9.0e-06 53.9 57 43.9


User provided reference genes

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