Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 2.1e-217 758.8 414 100.0
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 5.3e-160 568.2 444 71.2
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 2.0e-159 566.2 440 70.5
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 5.7e-154 548.1 440 69.3
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 8.2e-153 544.3 442 67.6
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 4.5e-151 538.5 439 65.4
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 5.9e-151 538.1 438 65.1
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.3e-150 537.0 446 67.0
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.2e-148 530.4 443 64.6
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 6.8e-147 524.6 450 64.9
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 9.8e-146 520.8 442 67.2
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 5.4e-144 515.0 444 66.0
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.2e-143 513.8 441 63.9
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 2.0e-143 513.1 448 66.5
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 2.0e-143 513.1 435 66.2
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.2e-142 509.6 446 64.8
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 5.5e-141 505.0 407 63.9
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 8.8e-139 497.7 393 66.4
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 2.2e-137 493.0 443 63.7
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 8.3e-137 491.1 400 65.0
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 1.0e-134 484.2 442 62.4
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.2e-132 477.2 446 62.6
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.1e-132 476.5 418 67.0
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 4.7e-132 475.3 397 63.0
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 6.1e-132 474.9 433 60.3
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 6.1e-132 474.9 396 63.6
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 8.0e-132 474.6 396 63.9
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 6.8e-131 471.5 379 66.0
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 2.0e-130 469.9 368 65.2
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 2.6e-130 469.5 380 64.2
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.4e-130 469.2 427 62.8
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 7.5e-130 468.0 394 62.9
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.7e-129 466.8 448 60.0
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.2e-129 466.5 381 66.1
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 8.3e-129 464.5 395 62.8
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 4.1e-128 462.2 396 60.6
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 7.0e-128 461.5 426 60.8
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 7.0e-128 461.5 393 62.8
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 9.2e-128 461.1 438 62.6
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.2e-127 460.7 435 62.8
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.6e-127 460.3 402 60.9
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.6e-127 458.8 400 67.0
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 4.6e-127 458.8 400 61.2
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 4.6e-127 458.8 391 62.9
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 1.0e-126 457.6 376 63.3
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.3e-126 457.2 393 62.3
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.3e-126 457.2 396 62.6
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.7e-126 456.8 380 62.4
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.7e-126 456.8 376 63.0
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 1.7e-126 456.8 444 59.2
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 2.3e-126 456.4 376 63.0
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 2.3e-126 456.4 376 63.0
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.3e-126 456.4 442 57.0
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 2.3e-126 456.4 390 64.1
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.0e-126 456.1 395 63.3
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 3.9e-126 455.7 403 61.8
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 6.6e-126 454.9 382 63.4
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 8.6e-126 454.5 442 57.0
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 8.6e-126 454.5 442 57.0
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 8.6e-126 454.5 442 57.0
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 1.5e-125 453.8 376 62.8
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.5e-125 453.8 398 63.3
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 2.5e-125 453.0 405 61.7
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.3e-125 452.2 442 57.0
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 5.6e-125 451.8 398 59.3
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 5.6e-125 451.8 388 62.6
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 7.3e-125 451.4 447 61.3
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 9.5e-125 451.1 396 59.3
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 2.1e-124 449.9 387 60.5
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 2.1e-124 449.9 386 61.7
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 6.2e-124 448.4 386 62.7
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 6.2e-124 448.4 395 61.8
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 8.9e-123 444.5 393 60.3
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.2e-122 444.1 392 59.2
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.2e-122 444.1 438 56.2
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.0e-122 443.4 394 59.4
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 7.5e-122 441.4 418 62.4
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.3e-121 440.7 391 58.3
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.3e-121 440.7 391 58.3
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.7e-121 440.3 388 61.3
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.2e-121 439.9 391 61.1
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.9e-121 439.5 391 58.6
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 3.7e-121 439.1 391 59.3
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.1e-120 437.6 423 59.3
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.9e-120 436.8 453 60.0
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 4.1e-120 435.6 376 61.2
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.6e-119 433.7 440 56.4
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 2.7e-119 433.0 438 56.4
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 1.3e-118 430.6 400 56.2
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.7e-118 430.3 386 58.8
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.0e-118 429.5 377 60.7
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 3.9e-118 429.1 425 58.8
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.5e-117 427.2 383 59.0
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 7.3e-117 424.9 390 57.4
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 3.6e-116 422.5 402 57.7
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 8.1e-116 421.4 422 56.9
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 8.1e-116 421.4 408 54.7
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.8e-115 420.2 373 61.4
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 1.8e-115 420.2 373 60.3
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 2.3e-115 419.9 373 60.3
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.3e-115 419.9 422 59.0
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 2.3e-115 419.9 394 57.9
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 8.9e-115 417.9 414 55.1
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 8.9e-115 417.9 394 59.4
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 8.9e-115 417.9 396 58.8
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 7.5e-114 414.8 377 59.7
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 3.7e-113 412.5 418 54.5
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.4e-112 410.6 379 59.1
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 1.9e-112 410.2 399 57.1
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 4.1e-112 409.1 389 55.3
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.7e-108 395.6 376 54.8
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.8e-107 393.7 376 54.5
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.0e-106 390.2 376 54.3
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.7e-105 387.1 425 52.0
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.9e-104 383.6 372 56.7
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 7.8e-103 378.3 377 55.2
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 6.6e-102 375.2 390 53.1
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 9.6e-101 371.3 327 60.9
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.1e-100 370.2 393 51.9
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 5.2e-99 365.5 385 51.2
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 6.4e-97 358.6 295 63.1
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.1e-91 339.7 356 53.9
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 1.4e-72 277.7 210 65.7
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 7.1e-72 275.4 214 63.1
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.7e-71 273.5 294 51.7
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 2.5e-69 266.9 414 40.6
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 3.4e-66 256.5 386 40.7
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 3.0e-62 243.4 159 75.5
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 8.2e-60 235.3 193 75.6
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 2.0e-58 230.7 252 51.6
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 2.9e-57 226.9 216 56.9
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 6.1e-55 219.2 174 68.4
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 3.3e-53 213.4 149 71.8
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 2.2e-52 210.7 149 74.5
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 8.5e-41 172.2 297 34.0
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.2e-39 168.3 213 48.8
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 2.7e-39 167.2 421 30.9
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.0e-30 138.7 114 64.9
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.5e-18 97.1 79 59.5
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 4.0e-14 83.6 71 62.0
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 3.3e-08 63.9 318 23.3
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 6.2e-07 59.7 137 33.6
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 8.0e-07 59.3 36 66.7


User provided reference genes

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