Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16909 Striga asiatica HOM05D003199 ORTHO05D003528 1.1e-145 520.0 278 100.0
SGA_v2.0_scaffold1G00727 Striga asiatica HOM05D006327 ORTHO05D016198 1.0e-42 177.9 92 94.6
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 2.3e-29 133.7 106 68.9
Nitab4.5_0002911g0010 Nicotiana tabacum HOM05D003199 ORTHO05D003528 2.0e-22 110.5 182 44.5
Oeu011754.1 Olea europaea HOM05D003199 ORTHO05D003528 5.0e-21 105.9 192 40.1
Nitab4.5_0000040g0380 Nicotiana tabacum HOM05D003199 ORTHO05D003528 3.3e-20 103.2 187 42.2
Migut.F00072 Erythranthe guttata HOM05D003199 ORTHO05D003528 1.2e-19 101.3 189 50.3
Oeu011964.1 Olea europaea HOM05D003199 ORTHO05D003528 1.2e-19 101.3 126 52.4
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 1.2e-19 101.3 99 58.6
CAN.G1491.4 Capsicum annuum HOM05D003199 ORTHO05D003528 1.4e-18 97.8 216 38.4
MD17G1012600 Malus domestica HOM05D003199 ORTHO05D003528 1.4e-18 97.8 181 36.5
Oeu011963.1 Olea europaea HOM05D003199 ORTHO05D003528 5.8e-17 92.4 121 51.2
FvH4_6g53290 Fragaria vesca HOM05D003199 ORTHO05D003528 1.1e-15 88.2 179 45.8
CAN.G473.92 Capsicum annuum HOM05D003199 ORTHO05D003528 1.4e-15 87.8 127 48.8
FAN02G1758 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.9e-15 87.4 179 46.9
Prupe.3G305100 Prunus persica HOM05D003199 ORTHO05D003528 1.9e-15 87.4 182 35.2
FAN05G2482 Fragaria x ananassa HOM05D003199 ORTHO05D003528 3.2e-15 86.7 179 46.4
Sopen02g017200 Solanum pennellii HOM05D003199 ORTHO05D003528 4.1e-15 86.3 128 48.4
SalBow4G2736 Salvia bowleyana HOM05D003199 ORTHO05D003528 5.4e-15 85.9 125 45.6
Solyc02g068090.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 5.4e-15 85.9 128 47.7
Aqoxy5G03579 Aquilegia oxysepala HOM05D003199 ORTHO05D003528 7.0e-15 85.5 178 37.1
FAN14G1306 Fragaria x ananassa HOM05D003199 ORTHO05D003528 9.2e-15 85.1 179 45.8
RcHm_v2.0_Chr2g0175441 Rosa chinensis HOM05D003199 ORTHO05D003528 1.2e-14 84.7 178 44.9
Sed0014935 Sechium edule HOM05D003199 ORTHO05D003528 1.2e-14 84.7 180 36.1
PGSC0003DMG400006976 Solanum tuberosum HOM05D003199 ORTHO05D003528 1.2e-14 84.7 128 46.9
Cc07_g00740 Coffea canephora HOM05D003199 ORTHO05D003528 2.0e-14 84.0 188 42.6
MSTRG.3260 Avicennia marina HOM05D003199 ORTHO05D003528 6.0e-14 82.4 118 47.5
QL10p005054 Quercus lobata HOM05D003199 ORTHO05D003528 6.0e-14 82.4 184 35.9
CiPaw.12G035800 Carya illinoinensis HOM05D003199 ORTHO05D003528 1.0e-13 81.6 186 41.4
Ciclev10016867m.g Citrus clementina HOM05D003199 ORTHO05D003528 1.0e-13 81.6 188 43.6
Lju41C52T19 Lonicera japonica HOM05D003199 ORTHO05D003528 1.0e-13 81.6 132 43.9
Peaxi162Scf00420g00566 Petunia axillaris HOM05D003199 ORTHO05D003528 1.3e-13 81.3 118 39.8
PGR142G2189 Punica granatum HOM05D003199 ORTHO05D003528 1.3e-13 81.3 177 40.1
AUR62003498 Chenopodium quinoa HOM05D003199 ORTHO05D003528 1.7e-13 80.9 125 41.6
ClCG05G013420 Citrullus lanatus HOM05D003199 ORTHO05D003528 1.7e-13 80.9 187 35.3
Gohir.A05G339100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 3.0e-13 80.1 180 43.3
CSS0036982 Camellia sinensis var. sinensis HOM05D003199 ORTHO05D003528 3.9e-13 79.7 178 42.1
MELO3C014875.2 Cucumis melo HOM05D003199 ORTHO05D003528 3.9e-13 79.7 186 34.9
CsaV3_3G027140 Cucumis sativus L. HOM05D003199 ORTHO05D003528 1.1e-12 78.2 185 34.1
HanXRQChr07g0198271 Helianthus annuus HOM05D003199 ORTHO05D003528 1.1e-12 78.2 116 42.2
SGA_v2.0_scaffold163G38002 Striga asiatica HOM05D001488 ORTHO05D016198 1.5e-12 77.8 79 54.4
Sabra16G0212600 Salix brachista HOM05D003199 ORTHO05D003528 1.9e-12 77.4 125 43.2
Lsat_1_v5_gn_2_94161 Lactuca sativa HOM05D003199 ORTHO05D003528 2.5e-12 77.0 119 43.7
Potri.001G331600 Populus trichocarpa HOM05D003199 ORTHO05D003528 2.5e-12 77.0 183 37.2
Ciclev10022507m.g Citrus clementina HOM05D003199 ORTHO05D003528 3.3e-12 76.6 178 43.3
Gohir.D04G077600 Gossypium hirsutum HOM05D003199 ORTHO05D003528 3.3e-12 76.6 180 43.9
Gorai.012G087400 Gossypium raimondii HOM05D003199 ORTHO05D003528 4.3e-12 76.3 180 43.3
Carub.0005s0539 Capsella rubella HOM05D003199 ORTHO05D003528 7.3e-12 75.5 124 42.7
Duzib205G0007 Durio zibethinus HOM05D003199 ORTHO05D003528 7.3e-12 75.5 165 43.6
Gohir.A09G035300 Gossypium hirsutum HOM05D003199 ORTHO05D003528 7.3e-12 75.5 123 40.7
Lj2g0014633 Lotus japonicus HOM05D003199 ORTHO05D003528 7.3e-12 75.5 186 31.7
DCAR_026209 Daucus carota HOM05D003199 ORTHO05D003528 9.5e-12 75.1 124 38.7
Glyma.05G077200 Glycine max HOM05D003199 ORTHO05D003528 9.5e-12 75.1 127 35.4
AL5G16270 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 1.2e-11 74.7 124 41.9
TAR374G1096 Trochodendron aralioides HOM05D003199 ORTHO05D003528 1.2e-11 74.7 191 39.8
MSTRG.4586 Avicennia marina HOM05D003199 ORTHO05D003528 1.6e-11 74.3 191 30.4
Thhalv10004988m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 2.1e-11 73.9 123 39.8
BcaC03g18193 Brassica carinata HOM05D003199 ORTHO05D003528 2.8e-11 73.6 180 45.0
BolC2t12315H Brassica oleracea HOM05D003199 ORTHO05D003528 2.8e-11 73.6 180 45.0
Gohir.D09G036100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 3.6e-11 73.2 123 39.8
Gorai.006G041200 Gossypium raimondii HOM05D003199 ORTHO05D003528 3.6e-11 73.2 123 39.8
Atru.chr6.2549 Acer truncatum HOM05D003199 ORTHO05D003528 4.7e-11 72.8 123 42.3
Atru.chr6.2557 Acer truncatum HOM05D003199 ORTHO05D003528 4.7e-11 72.8 123 42.3
AT3G27160 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 4.7e-11 72.8 123 38.2
Lsat_1_v5_gn_5_13260 Lactuca sativa HOM05D003199 ORTHO05D003528 4.7e-11 72.8 122 42.6
Cpa.g.sc1017.1 Carica papaya HOM05D003199 ORTHO05D003528 6.2e-11 72.4 195 42.1
Haze_14863 Corylus avellana HOM05D003199 ORTHO05D003528 6.2e-11 72.4 137 48.2
ECA246G3163 Erigeron canadensis HOM05D003199 ORTHO05D003528 6.2e-11 72.4 173 34.7
Thhalv10005605m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 6.2e-11 72.4 181 43.1
THA.LOC104825617 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 6.2e-11 72.4 184 40.8
DCAR_002949 Daucus carota HOM05D003199 ORTHO05D003528 8.0e-11 72.0 166 45.8
Nitab4.5_0010637g0020 Nicotiana tabacum HOM05D003199 ORTHO05D003528 8.0e-11 72.0 179 40.8
Aa31LG2G5470 Aethionema arabicum HOM05D003199 ORTHO05D003528 1.1e-10 71.6 185 32.4
BcaB07g30185 Brassica carinata HOM05D003199 ORTHO05D003528 1.4e-10 71.2 112 39.3
PSO063G5134 Papaver somniferum HOM05D003199 ORTHO05D003528 1.4e-10 71.2 195 41.5
PSO782G3015 Papaver somniferum HOM05D003199 ORTHO05D003528 1.4e-10 71.2 195 42.1
Sp2g16270 Schrenkiella parvula HOM05D003199 ORTHO05D003528 1.4e-10 71.2 123 39.0
A09p03290 Brassica napus HOM05D003199 ORTHO05D003528 1.8e-10 70.9 124 37.9
BraA09t35967Z Brassica rapa HOM05D003199 ORTHO05D003528 1.8e-10 70.9 124 37.9
Duzib147G1480 Durio zibethinus HOM05D003199 ORTHO05D003528 1.8e-10 70.9 129 36.4
Atru.chr9.1013 Acer truncatum HOM05D003199 ORTHO05D003528 2.3e-10 70.5 139 42.4
CiPaw.03G054500 Carya illinoinensis HOM05D003199 ORTHO05D003528 2.3e-10 70.5 110 40.0
Prupe.5G156900 Prunus persica HOM05D003199 ORTHO05D003528 2.3e-10 70.5 178 30.3
Aa31LG1G18700 Aethionema arabicum HOM05D003199 ORTHO05D003528 3.1e-10 70.1 133 48.1
C02p62560 Brassica napus HOM05D003199 ORTHO05D003528 3.1e-10 70.1 180 46.1
Glyma.19G071300 Glycine max HOM05D003199 ORTHO05D003528 3.1e-10 70.1 122 43.4
BcaC03g17429 Brassica carinata HOM05D003199 ORTHO05D003528 4.0e-10 69.7 125 38.4
A02p35140 Brassica napus HOM05D003199 ORTHO05D003528 4.0e-10 69.7 123 38.2
BolC2t11446H Brassica oleracea HOM05D003199 ORTHO05D003528 4.0e-10 69.7 125 38.4
C02p53770 Brassica napus HOM05D003199 ORTHO05D003528 5.2e-10 69.3 125 38.4
CARHR148360 Cardamine hirsuta HOM05D003199 ORTHO05D003528 5.2e-10 69.3 122 36.9
HanXRQChr05g0154721 Helianthus annuus HOM05D003199 ORTHO05D003528 5.2e-10 69.3 143 35.0
AUR62017813 Chenopodium quinoa HOM05D003199 ORTHO05D003528 6.8e-10 68.9 125 53.6
Dinv33347 Davidia involucrata HOM05D003199 ORTHO05D003528 6.8e-10 68.9 128 39.8
BcaB04g19427 Brassica carinata HOM05D003199 ORTHO05D003528 8.9e-10 68.6 125 36.8
Eucgr.I01653 Eucalyptus grandis HOM05D003199 ORTHO05D003528 8.9e-10 68.6 192 30.7
Lj4g0002784 Lotus japonicus HOM05D003199 ORTHO05D003528 8.9e-10 68.6 123 35.8
Actinidia05917 Actinidia chinensis HOM05D003199 ORTHO05D003528 1.2e-09 68.2 115 40.0
BcaC04g23918 Brassica carinata HOM05D003199 ORTHO05D003528 1.2e-09 68.2 124 37.9
C09p03490 Brassica napus HOM05D003199 ORTHO05D003528 1.2e-09 68.2 124 37.9
BolC9t53270H Brassica oleracea HOM05D003199 ORTHO05D003528 1.2e-09 68.2 124 37.9
BraA02t08519Z Brassica rapa HOM05D003199 ORTHO05D003528 1.2e-09 68.2 123 36.6
RcHm_v2.0_Chr2g0088911 Rosa chinensis HOM05D003199 ORTHO05D003528 1.2e-09 68.2 121 40.5
RcHm_v2.0_Chr2g0088961 Rosa chinensis HOM05D003199 ORTHO05D003528 1.2e-09 68.2 121 40.5
RcHm_v2.0_Chr2g0089001 Rosa chinensis HOM05D003199 ORTHO05D003528 1.2e-09 68.2 121 40.5
Actinidia36194 Actinidia chinensis HOM05D003199 ORTHO05D003528 1.5e-09 67.8 115 40.9
AL8G40380 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 1.5e-09 67.8 186 32.3
unitig_52.g17653 Utricularia gibba HOM05D003199 ORTHO05D003528 2.0e-09 67.4 180 43.3
AT5G63300 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 2.6e-09 67.0 187 33.7
Sp2g26420 Schrenkiella parvula HOM05D003199 ORTHO05D003528 2.6e-09 67.0 182 45.6
Ca_14371_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 3.4e-09 66.6 84 48.8
Actinidia36788 Actinidia chinensis HOM05D003199 ORTHO05D003528 4.4e-09 66.2 109 52.3
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 4.4e-09 66.2 102 43.1
Sed0000109 Sechium edule HOM05D003199 ORTHO05D003528 4.4e-09 66.2 181 30.9
Lalb_Chr02g0157721 Lupinus albus HOM05D003199 ORTHO05D003528 5.8e-09 65.9 127 35.4
THA.LOC104823979 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 5.8e-09 65.9 169 33.1
Cfa007237 Carpinus fangiana HOM05D003199 ORTHO05D003528 7.5e-09 65.5 111 37.8
HanXRQChr14g0450701 Helianthus annuus HOM05D003199 ORTHO05D003528 7.5e-09 65.5 177 44.6
Hma1.2p1_1278F.1_g272370 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 7.5e-09 65.5 133 39.8
Peaxi162Scf00881g00240 Petunia axillaris HOM05D003199 ORTHO05D003528 7.5e-09 65.5 114 43.9
Phvul.004G054500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 7.5e-09 65.5 113 36.3
TAR622G0507 Trochodendron aralioides HOM05D003199 ORTHO05D003528 7.5e-09 65.5 133 36.1
arahy.Tifrunner.gnm1.ann1.S1U1UA Arachis hypogaea HOM05D003199 ORTHO05D003528 9.8e-09 65.1 126 36.5
Dinv38468 Davidia involucrata HOM05D003199 ORTHO05D003528 9.8e-09 65.1 60 55.0
SGA_v2.0_scaffold157G37391 Striga asiatica HOM05D017365 ORTHO05D016198 1.3e-08 64.7 65 56.9
EL10Ac6g15370 Beta vulgaris HOM05D003199 ORTHO05D003528 1.7e-08 64.3 117 53.0
CARHR277140 Cardamine hirsuta HOM05D003199 ORTHO05D003528 1.7e-08 64.3 172 41.9
Ca_05564_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 1.7e-08 64.3 110 36.4
Glyma.19G090000 Glycine max HOM05D003199 ORTHO05D003528 2.2e-08 63.9 178 40.4
FvH4_5g07520 Fragaria vesca HOM05D003199 ORTHO05D003528 2.9e-08 63.5 134 38.1
Solyc03g110930.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 2.9e-08 63.5 114 42.1
COL.COLO4_17189 Corchorus olitorius HOM05D003199 ORTHO05D003528 3.7e-08 63.2 121 35.5
Sopen03g030120 Solanum pennellii HOM05D003199 ORTHO05D003528 3.7e-08 63.2 161 36.6
CANSAT64G0211 Cannabis sativa HOM05D003199 ORTHO05D003528 4.9e-08 62.8 178 39.9
Oeu044613.1 Olea europaea HOM05D003199 ORTHO05D003528 4.9e-08 62.8 102 55.9
FAN08G2398 Fragaria x ananassa HOM05D003199 ORTHO05D003528 6.4e-08 62.4 141 32.6
Manes.15G159800 Manihot esculenta HOM05D003199 ORTHO05D003528 6.4e-08 62.4 181 40.9
Nitab4.5_0005418g0050 Nicotiana tabacum HOM05D003199 ORTHO05D003528 6.4e-08 62.4 128 46.9
VMungo0464G0590 Vigna mungo HOM05D003199 ORTHO05D003528 6.4e-08 62.4 59 50.8
Migut.D01231 Erythranthe guttata HOM05D003199 ORTHO05D003528 1.1e-07 61.6 195 30.8
PGR083G2021 Punica granatum HOM05D003199 ORTHO05D003528 1.1e-07 61.6 184 42.9
QL02p071628 Quercus lobata HOM05D003199 ORTHO05D003528 1.1e-07 61.6 106 40.6
TWI36G0480 Tripterygium wilfordii HOM05D003199 ORTHO05D003528 1.1e-07 61.6 113 38.1
Gohir.A07G053400 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.9e-07 60.8 86 43.0
Hma1.2p1_0046F.1_g027530 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 1.9e-07 60.8 125 36.8
Lj1g0002355 Lotus japonicus HOM05D003199 ORTHO05D003528 1.9e-07 60.8 57 50.9
Thecc.03G122900 Theobroma cacao HOM05D003199 ORTHO05D003528 1.9e-07 60.8 105 38.1
Thecc.04G034700 Theobroma cacao HOM05D003199 ORTHO05D003528 2.4e-07 60.5 80 43.8
PGSC0003DMG400015257 Solanum tuberosum HOM05D003199 ORTHO05D003528 3.2e-07 60.1 107 41.1
Ah.02g120420 Amaranthus hybridus HOM05D003199 ORTHO05D003528 4.1e-07 59.7 115 51.3
Glyma.05G044800 Glycine max HOM05D003199 ORTHO05D003528 4.1e-07 59.7 130 30.8
CsaV3_1G009300 Cucumis sativus L. HOM05D003199 ORTHO05D003528 5.4e-07 59.3 180 32.8
FAN04G2235 Fragaria x ananassa HOM05D003199 ORTHO05D003528 5.4e-07 59.3 157 38.2
Lalb_Chr24g0403341 Lupinus albus HOM05D003199 ORTHO05D003528 5.4e-07 59.3 182 35.2
Glyma.17G181000 Glycine max HOM05D003199 ORTHO05D003528 7.1e-07 58.9 182 35.2
Manes.17G103700 Manihot esculenta HOM05D003199 ORTHO05D003528 7.1e-07 58.9 115 36.5
VMungo1383G1719 Vigna mungo HOM05D003199 ORTHO05D003528 7.1e-07 58.9 162 36.4
arahy.Tifrunner.gnm1.ann1.Z1YI97 Arachis hypogaea HOM05D003199 ORTHO05D003528 9.2e-07 58.5 127 40.2
Nn4g22460 Nelumbo nucifera HOM05D003199 ORTHO05D003528 9.2e-07 58.5 128 33.6
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 1.2e-06 58.2 48 58.3
Medtr7g029325 Medicago truncatula HOM05D003199 ORTHO05D003528 1.2e-06 58.2 134 33.6
CiPaw.04G036100 Carya illinoinensis HOM05D003199 ORTHO05D003528 1.6e-06 57.8 111 38.7
Gohir.D07G057800 Gossypium hirsutum HOM05D003199 ORTHO05D003528 2.1e-06 57.4 83 42.2
AagrBONN_evm.TU.Sc2ySwM_228.1446 Anthoceros agrestis HOM05D003199 ORTHO05D003528 2.7e-06 57.0 76 40.8
arahy.Tifrunner.gnm1.ann1.NFT2PX Arachis hypogaea HOM05D003199 ORTHO05D003528 2.7e-06 57.0 124 40.3
MELO3C002333.2 Cucumis melo HOM05D003199 ORTHO05D003528 2.7e-06 57.0 182 39.6
Nn1g07337 Nelumbo nucifera HOM05D003199 ORTHO05D003528 3.5e-06 56.6 101 37.6
TPR.G37524 Trifolium pratense HOM05D003199 ORTHO05D003528 3.5e-06 56.6 119 31.1
AagrBONN_evm.TU.Sc2ySwM_344.1902 Anthoceros agrestis HOM05D003199 ORTHO05D003528 4.6e-06 56.2 71 45.1
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 4.6e-06 56.2 121 34.7
AUR62025727 Chenopodium quinoa HOM05D003199 ORTHO05D003528 4.6e-06 56.2 100 35.0
Potri.012G092700 Populus trichocarpa HOM05D003199 ORTHO05D003528 4.6e-06 56.2 130 35.4
SalBow1G6303 Salvia bowleyana HOM05D003199 ORTHO05D003528 6.0e-06 55.8 65 47.7
ClCG03G003500 Citrullus lanatus HOM05D003199 ORTHO05D003528 7.8e-06 55.5 179 30.2
VMungo1215G0313 Vigna mungo HOM05D003199 ORTHO05D003528 7.8e-06 55.5 179 28.5


User provided reference genes

Program Settings