Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 4.4e-200 701.0 346 100.0
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 6.9e-121 438.0 347 64.0
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 8.5e-119 431.0 346 62.4
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.6e-117 425.6 346 63.6
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 4.7e-117 425.2 346 63.9
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.3e-114 417.2 346 61.0
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 4.5e-112 408.7 346 60.4
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 8.0e-109 397.9 382 55.5
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 3.3e-107 392.5 346 57.5
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 9.7e-107 391.0 347 59.4
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.1e-101 373.2 346 56.4
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 2.7e-101 372.9 346 54.6
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.8e-100 370.2 347 55.6
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 1.8e-100 370.2 346 54.6
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.5e-99 367.1 346 54.6
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 3.4e-99 365.9 360 53.1
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 1.7e-98 363.6 349 53.9
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.7e-98 362.5 346 53.2
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.8e-97 360.1 346 52.9
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.4e-97 359.8 346 52.6
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 1.2e-96 357.5 346 52.9
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.6e-96 357.1 329 56.2
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 3.5e-96 355.9 346 52.9
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 4.5e-96 355.5 353 53.5
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 7.7e-96 354.8 346 54.9
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.3e-95 354.0 346 54.3
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 1.3e-95 354.0 346 51.7
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 1.3e-95 354.0 346 54.3
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.7e-95 353.6 346 54.6
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 1.7e-95 353.6 346 51.7
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 5.0e-95 352.1 347 52.7
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 6.6e-95 351.7 346 52.0
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.5e-94 350.5 346 52.3
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 1.9e-94 350.1 346 52.9
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 3.3e-94 349.4 346 53.2
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 5.5e-94 348.6 346 52.6
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 5.5e-94 348.6 346 53.2
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 2.1e-93 346.7 346 53.8
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 4.7e-93 345.5 347 52.2
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 4.7e-93 345.5 346 50.9
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 8.0e-93 344.7 346 53.2
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 8.0e-93 344.7 346 53.2
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.0e-92 344.4 346 51.7
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.8e-92 343.6 346 51.7
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.8e-92 343.6 346 53.8
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 5.2e-92 342.0 346 51.4
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 6.8e-92 341.7 386 47.7
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 1.5e-91 340.5 346 52.6
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 3.4e-91 339.3 350 50.6
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.4e-91 339.0 347 52.7
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 4.4e-91 339.0 346 53.5
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 4.4e-91 339.0 346 53.2
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 5.7e-91 338.6 346 49.4
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 9.8e-91 337.8 346 51.2
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 2.2e-90 336.7 346 49.1
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.8e-90 336.3 346 50.9
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 3.7e-90 335.9 346 50.0
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 4.9e-90 335.5 347 52.7
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 6.3e-90 335.1 346 51.2
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 3.1e-89 332.8 348 50.3
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 7.0e-89 331.6 347 50.4
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 9.2e-89 331.3 346 50.6
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 9.2e-89 331.3 402 46.0
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 1.2e-88 330.9 346 49.4
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.6e-88 330.5 337 51.9
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 2.0e-88 330.1 346 50.3
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 2.0e-88 330.1 346 49.1
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 2.7e-88 329.7 346 49.7
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.0e-87 327.8 359 48.2
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 3.8e-87 325.9 415 44.6
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 5.0e-87 325.5 346 49.1
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 6.6e-87 325.1 346 50.6
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 1.9e-86 323.6 346 50.3
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.9e-86 323.6 346 48.6
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 1.9e-86 323.6 348 49.1
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 4.3e-86 322.4 346 48.8
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 5.6e-86 322.0 348 50.6
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 5.6e-86 322.0 346 48.8
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 5.6e-86 322.0 346 49.1
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 9.5e-86 321.2 346 48.0
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 1.6e-85 320.5 346 48.8
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 2.1e-85 320.1 346 48.3
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 3.6e-85 319.3 346 47.4
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 1.4e-84 317.4 329 49.5
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.3e-84 316.6 346 48.6
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 4.0e-84 315.8 329 51.1
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 4.0e-84 315.8 346 48.0
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 1.5e-83 313.9 347 49.0
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 1.5e-83 313.9 347 49.0
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 9.8e-83 311.2 346 50.0
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 3.7e-82 309.3 328 49.4
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 4.9e-82 308.9 347 47.6
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.4e-81 307.4 346 47.1
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 4.1e-81 305.8 346 46.8
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 6.0e-80 302.0 306 54.2
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 6.0e-80 302.0 347 47.8
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 2.3e-79 300.1 368 46.5
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 1.1e-78 297.7 355 44.2
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 1.9e-78 297.0 391 43.0
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 1.9e-78 297.0 356 44.9
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 9.5e-78 294.7 352 44.9
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 4.7e-77 292.4 347 45.2
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 6.2e-77 292.0 352 45.7
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 1.2e-75 287.7 254 58.3
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 2.0e-75 287.0 372 41.9
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.4e-75 285.8 289 51.6
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 3.7e-74 282.7 382 41.9
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 1.4e-73 280.8 347 44.4
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 6.0e-72 275.4 347 44.1
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.1e-70 271.2 308 50.6
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.5e-70 270.0 255 52.9
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 8.9e-68 261.5 346 43.4
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 8.3e-66 255.0 347 45.5
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 8.3e-66 255.0 343 44.0
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 6.0e-64 248.8 243 52.7
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 8.1e-61 238.4 327 41.6
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.1e-60 238.0 329 41.9
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 5.8e-59 232.3 212 57.1
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 1.3e-58 231.1 316 45.6
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 2.1e-56 223.8 312 42.6
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 4.6e-56 222.6 211 55.0
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 8.1e-53 211.8 250 46.0
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 2.4e-52 210.3 259 47.1
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.2e-48 198.0 338 37.3
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 7.8e-48 195.3 346 36.4
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.7e-47 194.1 167 57.5
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 5.1e-47 192.6 352 33.5
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.1e-46 191.4 182 56.0
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 1.5e-43 181.0 146 61.6
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.9e-42 176.8 166 53.6
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.2e-41 172.9 166 53.6
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 7.9e-40 168.7 161 54.7
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 7.4e-38 162.2 146 56.8
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.3e-34 151.4 173 45.7
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.4e-34 149.1 268 35.4
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 1.8e-31 141.0 185 42.7
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 1.6e-29 134.4 149 50.3
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.8e-28 131.0 324 31.2
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 6.5e-26 122.5 316 29.4
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 3.0e-23 113.6 232 32.3
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 3.0e-23 113.6 248 29.8
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 9.7e-22 108.6 141 43.3
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 2.8e-21 107.1 83 60.2
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 3.1e-20 103.6 137 40.9
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 2.2e-18 97.4 325 26.8
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.4e-17 94.7 141 42.6
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.5e-14 84.0 120 40.8
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 4.3e-14 83.2 75 53.3
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 9.7e-14 82.0 75 53.3
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 9.7e-14 82.0 75 53.3
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.3e-13 81.6 116 40.5
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 3.1e-12 77.0 77 48.1
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.1e-12 76.6 62 54.8
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 3.8e-10 70.1 87 46.0
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 3.2e-09 67.0 50 60.0
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 7.9e-08 62.4 89 40.4
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 3.0e-07 60.5 62 51.6


User provided reference genes

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