Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16902 Striga asiatica HOM05D004822 ORTHO05D005632 8.6e-125 450.3 221 100.0
Migut.F00086 Erythranthe guttata HOM05D004822 ORTHO05D005632 1.0e-96 357.1 256 68.8
MSTRG.26924 Avicennia marina HOM05D004822 ORTHO05D005632 1.2e-89 333.6 256 66.0
SalBow4G2092 Salvia bowleyana HOM05D004822 ORTHO05D005632 7.6e-89 330.9 265 63.0
SalBow4G3298 Salvia bowleyana HOM05D004822 ORTHO05D005632 7.6e-89 330.9 265 63.0
Cc02_g00190 Coffea canephora HOM05D004822 ORTHO05D005632 6.1e-86 321.2 259 62.2
Dinv29145 Davidia involucrata HOM05D004822 ORTHO05D005632 3.0e-85 318.9 256 62.1
Oeu007515.1 Olea europaea HOM05D004822 ORTHO05D005632 3.3e-84 315.5 256 61.7
Hma1.2p1_0649F.1_g195250 Hydrangea macrophylla HOM05D004822 ORTHO05D005632 2.2e-83 312.8 256 63.3
Peaxi162Scf00516g00674 Petunia axillaris HOM05D004822 ORTHO05D005632 9.0e-82 307.4 256 61.3
GSVIVG01024375001 Vitis vinifera HOM05D004822 ORTHO05D005632 1.5e-81 306.6 256 60.9
Cfa016047 Carpinus fangiana HOM05D004822 ORTHO05D005632 2.0e-81 306.2 256 59.8
Solyc03g097140.3 Solanum lycopersicum HOM05D004822 ORTHO05D005632 4.5e-81 305.1 256 61.3
CAN.G1131.24 Capsicum annuum HOM05D004822 ORTHO05D005632 1.4e-79 300.1 256 60.2
Dinv17249 Davidia involucrata HOM05D004822 ORTHO05D005632 1.4e-79 300.1 256 61.7
QL09p023219 Quercus lobata HOM05D004822 ORTHO05D005632 1.9e-79 299.7 255 57.6
Thecc.05G215800 Theobroma cacao HOM05D004822 ORTHO05D005632 9.4e-79 297.4 256 59.8
Manes.09G127500 Manihot esculenta HOM05D004822 ORTHO05D005632 1.6e-78 296.6 248 61.3
Nitab4.5_0000021g0700 Nicotiana tabacum HOM05D004822 ORTHO05D005632 3.6e-78 295.4 256 60.9
COL.COLO4_15238 Corchorus olitorius HOM05D004822 ORTHO05D005632 6.1e-78 294.7 255 59.2
MD01G1237100 Malus domestica HOM05D004822 ORTHO05D005632 1.0e-77 293.9 246 60.6
MD07G1309700 Malus domestica HOM05D004822 ORTHO05D005632 1.0e-77 293.9 246 60.2
Nitab4.5_0004530g0010 Nicotiana tabacum HOM05D004822 ORTHO05D005632 1.0e-77 293.9 254 60.6
ECA232G1387 Erigeron canadensis HOM05D004822 ORTHO05D005632 1.4e-77 293.5 248 59.3
Ciclev10021817m.g Citrus clementina HOM05D004822 ORTHO05D005632 5.1e-77 291.6 256 59.0
Nitab4.5_0000150g0020 Nicotiana tabacum HOM05D004822 ORTHO05D005632 5.1e-77 291.6 240 61.2
TPR.G37975 Trifolium pratense HOM05D004822 ORTHO05D005632 5.1e-77 291.6 258 60.1
DCAR_020414 Daucus carota HOM05D004822 ORTHO05D005632 1.1e-76 290.4 255 57.3
Glyma.11G009600 Glycine max HOM05D004822 ORTHO05D005632 1.1e-76 290.4 250 60.8
Psat2g189120 Pisum sativum HOM05D004822 ORTHO05D005632 1.5e-76 290.0 258 59.3
PGSC0003DMG400003148 Solanum tuberosum HOM05D004822 ORTHO05D005632 1.5e-76 290.0 282 56.0
Sed0007243 Sechium edule HOM05D004822 ORTHO05D005632 2.0e-76 289.7 250 58.8
Prupe.2G327400 Prunus persica HOM05D004822 ORTHO05D005632 2.6e-76 289.3 248 58.9
Medtr5g007400 Medicago truncatula HOM05D004822 ORTHO05D005632 3.3e-76 288.9 258 58.9
RcHm_v2.0_Chr1g0384361 Rosa chinensis HOM05D004822 ORTHO05D005632 5.7e-76 288.1 249 59.8
CSS0024551 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 7.4e-76 287.7 245 58.0
Phvul.002G040700 Phaseolus vulgaris HOM05D004822 ORTHO05D005632 7.4e-76 287.7 250 59.6
CiPaw.05G216100 Carya illinoinensis HOM05D004822 ORTHO05D005632 1.7e-75 286.6 256 57.0
CiPaw.06G034300 Carya illinoinensis HOM05D004822 ORTHO05D005632 1.7e-75 286.6 251 59.4
Lalb_Chr01g0000881 Lupinus albus HOM05D004822 ORTHO05D005632 1.7e-75 286.6 248 60.9
CSS0024699 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 2.8e-75 285.8 245 57.6
TAR362G0773 Trochodendron aralioides HOM05D004822 ORTHO05D005632 8.2e-75 284.3 256 58.6
MELO3C021888.2 Cucumis melo HOM05D004822 ORTHO05D005632 2.4e-74 282.7 250 57.6
Glyma.01G233200 Glycine max HOM05D004822 ORTHO05D005632 2.4e-74 282.7 248 60.1
ClCG09G016920 Citrullus lanatus HOM05D004822 ORTHO05D005632 3.1e-74 282.3 248 58.1
FvH4_7g34080 Fragaria vesca HOM05D004822 ORTHO05D005632 3.1e-74 282.3 249 58.6
Peaxi162Scf00133g00611 Petunia axillaris HOM05D004822 ORTHO05D005632 4.1e-74 282.0 286 51.4
arahy.Tifrunner.gnm1.ann1.UL380H Arachis hypogaea HOM05D004822 ORTHO05D005632 6.9e-74 281.2 248 58.5
Sopen03g027880 Solanum pennellii HOM05D004822 ORTHO05D005632 6.9e-74 281.2 311 50.5
Duzib177G1199 Durio zibethinus HOM05D004822 ORTHO05D005632 1.2e-73 280.4 256 57.8
arahy.Tifrunner.gnm1.ann1.TC8PXF Arachis hypogaea HOM05D004822 ORTHO05D005632 1.5e-73 280.0 248 58.1
CANSAT56G1711 Cannabis sativa HOM05D004822 ORTHO05D005632 2.0e-73 279.6 257 55.6
Atru.chr12.1891 Acer truncatum HOM05D004822 ORTHO05D005632 4.5e-73 278.5 256 56.6
HanXRQChr08g0231351 Helianthus annuus HOM05D004822 ORTHO05D005632 4.5e-73 278.5 256 55.1
Duzib106G0609 Durio zibethinus HOM05D004822 ORTHO05D005632 7.7e-73 277.7 256 58.2
CsaV3_2G036410 Cucumis sativus L. HOM05D004822 ORTHO05D005632 1.0e-72 277.3 250 56.4
Rhsim03G0222800 Rhododendron simsii HOM05D004822 ORTHO05D005632 1.7e-72 276.6 256 55.9
HanXRQChr16g0512131 Helianthus annuus HOM05D004822 ORTHO05D005632 2.2e-72 276.2 256 54.7
Lalb_Chr19g0140001 Lupinus albus HOM05D004822 ORTHO05D005632 2.9e-72 275.8 239 58.6
TWI18G0151 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 5.0e-72 275.0 256 55.9
Hund09803 Selenicereus undatus HOM05D004822 ORTHO05D005632 8.5e-72 274.2 250 55.6
vmacro06525 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 1.4e-71 273.5 249 56.6
Aqoxy3G02240 Aquilegia oxysepala HOM05D004822 ORTHO05D005632 6.1e-70 268.1 255 55.3
CSS0013609 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 7.9e-70 267.7 243 55.1
TWI12G0583 Tripterygium wilfordii HOM05D004822 ORTHO05D005632 1.4e-69 266.9 256 53.9
CSS0045344 Camellia sinensis var. sinensis HOM05D004822 ORTHO05D005632 3.0e-69 265.8 243 54.7
AUR62002079 Chenopodium quinoa HOM05D004822 ORTHO05D005632 6.7e-69 264.6 251 55.0
Gohir.D08G241600 Gossypium hirsutum HOM05D004822 ORTHO05D005632 1.1e-68 263.8 257 55.6
LjContig00222g0020254 Lotus japonicus HOM05D004822 ORTHO05D005632 1.1e-68 263.8 257 55.6
Rhsim09G0213500 Rhododendron simsii HOM05D004822 ORTHO05D005632 1.1e-68 263.8 249 57.0
Sabra13G0073000 Salix brachista HOM05D004822 ORTHO05D005632 1.1e-68 263.8 239 56.1
Gorai.004G256900 Gossypium raimondii HOM05D004822 ORTHO05D005632 3.3e-68 262.3 257 55.6
Gohir.A08G221666 Gossypium hirsutum HOM05D004822 ORTHO05D005632 4.4e-68 261.9 257 55.6
Potri.019G050700 Populus trichocarpa HOM05D004822 ORTHO05D005632 5.7e-68 261.5 248 55.6
Sc25g0001230 Simmondsia chinensis HOM05D004822 ORTHO05D005632 1.3e-67 260.4 254 53.5
unitig_747.g21929 Utricularia gibba HOM05D004822 ORTHO05D005632 2.8e-67 259.2 247 55.1
Eucgr.K00079 Eucalyptus grandis HOM05D004822 ORTHO05D005632 4.8e-67 258.5 227 57.3
Nitab4.5_0001108g0050 Nicotiana tabacum HOM05D004822 ORTHO05D005632 9.1e-66 254.2 249 53.8
Sp6g27330 Schrenkiella parvula HOM05D004822 ORTHO05D005632 9.1e-66 254.2 244 52.9
PGR042G2086 Punica granatum HOM05D004822 ORTHO05D005632 1.2e-65 253.8 246 52.4
Potri.013G079900 Populus trichocarpa HOM05D004822 ORTHO05D005632 2.0e-65 253.1 228 57.0
THA.LOC104820895 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 5.9e-65 251.5 240 53.8
Carub.0006s1502 Capsella rubella HOM05D004822 ORTHO05D005632 7.7e-65 251.1 244 52.5
AT5G16800 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 2.9e-64 249.2 244 52.0
EL10Ac3g05059 Beta vulgaris HOM05D004822 ORTHO05D005632 2.9e-64 249.2 250 52.0
AL6G27820 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 3.8e-64 248.8 244 52.0
THA.LOC104827203 Tarenaya hassleriana HOM05D004822 ORTHO05D005632 6.5e-64 248.1 243 52.7
Haze_00399 Corylus avellana HOM05D004822 ORTHO05D005632 8.5e-64 247.7 194 64.4
Ah.04g156230 Amaranthus hybridus HOM05D004822 ORTHO05D005632 1.1e-63 247.3 252 50.4
C09p60280 Brassica napus HOM05D004822 ORTHO05D005632 2.5e-63 246.1 244 51.6
BcaB01g05242 Brassica carinata HOM05D004822 ORTHO05D005632 4.2e-63 245.4 238 53.4
C03p09170 Brassica napus HOM05D004822 ORTHO05D005632 4.2e-63 245.4 238 53.4
BolC3t13414H Brassica oleracea HOM05D004822 ORTHO05D005632 4.2e-63 245.4 238 53.4
CARHR196360 Cardamine hirsuta HOM05D004822 ORTHO05D005632 4.2e-63 245.4 244 50.8
A03p07960 Brassica napus HOM05D004822 ORTHO05D005632 5.5e-63 245.0 238 53.4
BraA03t10121Z Brassica rapa HOM05D004822 ORTHO05D005632 5.5e-63 245.0 238 53.4
BcaB01g04968 Brassica carinata HOM05D004822 ORTHO05D005632 7.2e-63 244.6 238 53.8
BcaC04g18845 Brassica carinata HOM05D004822 ORTHO05D005632 7.2e-63 244.6 244 51.2
A10p22430 Brassica napus HOM05D004822 ORTHO05D005632 9.4e-63 244.2 248 50.8
Aa31LG11G12780 Aethionema arabicum HOM05D004822 ORTHO05D005632 1.2e-62 243.8 237 53.2
Lj3A886T38 Lonicera japonica HOM05D004822 ORTHO05D005632 4.7e-62 241.9 194 61.9
HPP92_014856 Vanilla planifolia HOM05D004822 ORTHO05D005632 3.7e-59 232.3 256 48.8
Actinidia08752 Actinidia chinensis HOM05D004822 ORTHO05D005632 8.2e-59 231.1 186 61.8
SEGI_16512 Sequoiadendron giganteum HOM05D004822 ORTHO05D005632 1.1e-58 230.7 247 51.0
A05p44150 Brassica napus HOM05D004822 ORTHO05D005632 5.3e-58 228.4 231 50.2
BraSC90t46695Z Brassica rapa HOM05D004822 ORTHO05D005632 5.3e-58 228.4 231 50.2
SHI29591 Sapria himalayana HOM05D004822 ORTHO05D005632 9.1e-58 227.6 239 49.4
Nn1g00175 Nelumbo nucifera HOM05D004822 ORTHO05D005632 2.7e-57 226.1 194 60.8
Carub.0003s0211 Capsella rubella HOM05D004822 ORTHO05D005632 3.5e-57 225.7 230 50.0
Aa31LG5G13470 Aethionema arabicum HOM05D004822 ORTHO05D005632 7.7e-57 224.6 244 47.1
BolC9t58861H Brassica oleracea HOM05D004822 ORTHO05D005632 1.0e-56 224.2 247 48.6
arahy.Tifrunner.gnm1.ann1.YEB8JM Arachis hypogaea HOM05D004822 ORTHO05D005632 1.3e-56 223.8 233 52.4
ATR0829G204 Amborella trichopoda HOM05D004822 ORTHO05D005632 2.2e-56 223.0 194 58.8
AUR62028196 Chenopodium quinoa HOM05D004822 ORTHO05D005632 3.8e-56 222.2 215 54.9
AT3G02980 Arabidopsis thaliana HOM05D004822 ORTHO05D005632 6.5e-56 221.5 223 50.2
BraA10t44302Z Brassica rapa HOM05D004822 ORTHO05D005632 1.1e-55 220.7 259 47.1
Sp3g02040 Schrenkiella parvula HOM05D004822 ORTHO05D005632 1.5e-55 220.3 230 49.1
DCAR_010536 Daucus carota HOM05D004822 ORTHO05D005632 2.5e-55 219.5 243 49.4
TAR374G1016 Trochodendron aralioides HOM05D004822 ORTHO05D005632 3.2e-55 219.2 243 48.1
Mapoly0133s0015 Marchantia polymorpha HOM05D004822 ORTHO05D005632 7.2e-55 218.0 225 49.3
Lj3g0022054 Lotus japonicus HOM05D004822 ORTHO05D005632 2.3e-53 213.0 224 50.0
Sed0002247 Sechium edule HOM05D004822 ORTHO05D005632 5.2e-53 211.8 215 51.2
Thhalv10014541m.g Eutrema salsugineum HOM05D004822 ORTHO05D005632 2.0e-52 209.9 213 50.7
arahy.Tifrunner.gnm1.ann1.IXL9K3 Arachis hypogaea HOM05D004822 ORTHO05D005632 9.1e-50 201.1 186 58.6
Zm00001eb251310 Zea mays HOM05D004822 ORTHO05D005632 2.0e-49 199.9 204 52.5
Eucgr.H04873 Eucalyptus grandis HOM05D004822 ORTHO05D005632 1.3e-48 197.2 181 56.4
AL3G12440 Arabidopsis lyrata HOM05D004822 ORTHO05D005632 5.0e-48 195.3 194 50.5
Pp3c21_19030 Physcomitrium patens HOM05D004822 ORTHO05D005632 1.5e-47 193.7 206 47.1
Pp3c19_16350 Physcomitrium patens HOM05D004822 ORTHO05D005632 1.2e-46 190.7 208 47.1
SHI02573 Sapria himalayana HOM05D004822 ORTHO05D005632 4.0e-45 185.7 141 60.3
SMO146G0253 Selaginella moellendorffii HOM05D004822 ORTHO05D005632 7.0e-42 174.9 190 45.3
Gorai.013G103600 Gossypium raimondii HOM05D004822 ORTHO05D005632 7.3e-39 164.9 165 54.5
BcaC04g18846 Brassica carinata HOM05D004822 ORTHO05D005632 1.5e-36 157.1 128 57.0
Duzib128G1067 Durio zibethinus HOM05D004822 ORTHO05D005632 2.0e-36 156.8 138 58.7
arahy.Tifrunner.gnm1.ann1.U456D3 Arachis hypogaea HOM05D004822 ORTHO05D005632 2.6e-36 156.4 228 39.9
arahy.Tifrunner.gnm1.ann1.KDM1H7 Arachis hypogaea HOM05D004822 ORTHO05D005632 3.4e-36 156.0 228 39.9
Lsat_1_v5_gn_9_47720 Lactuca sativa HOM05D004822 ORTHO05D005632 2.2e-35 153.3 151 53.0
Os02g0694201 Oryza sativa ssp. japonica HOM05D004822 ORTHO05D005632 2.0e-33 146.7 124 55.6
CDE06G0869 Ceratophyllum demersum HOM05D000380 ORTHO05D000561 5.0e-32 142.1 169 48.5
PGR142G2504 Punica granatum HOM05D004822 ORTHO05D005632 1.8e-29 133.7 172 41.9
BolC5t35048H Brassica oleracea HOM05D004822 ORTHO05D005632 2.3e-29 133.3 113 54.9
Ca_24437_v3 Cicer arietinum L. HOM05D004822 ORTHO05D005632 1.9e-26 123.6 83 73.5
C05p63790 Brassica napus HOM05D000387 ORTHO05D005632 1.5e-23 114.0 115 50.4
Gohir.D13G099300 Gossypium hirsutum HOM05D004822 ORTHO05D005632 2.3e-21 106.7 144 45.1
BcaC05g30307 Brassica carinata HOM05D004822 ORTHO05D005632 3.4e-20 102.8 75 61.3
CBR_g57081 Chara braunii HOM05D004822 ORTHO05D005632 2.1e-17 93.6 105 46.7
vmacro22182 Vaccinium macrocarpon HOM05D004822 ORTHO05D005632 3.9e-16 89.4 60 70.0
Cre13.g572150 Chlamydomonas reinhardtii HOM05D004822 ORTHO05D005632 1.1e-13 81.3 185 33.0
BcaC05g30339 Brassica carinata HOM05D004822 ORTHO05D005632 1.3e-11 74.3 182 33.5
PRCOL_00005145 Prasinoderma coloniale HOM05D004822 ORTHO05D005632 2.3e-08 63.5 93 32.3
Ca_24436_v3 Cicer arietinum L. HOM05D004822 ORTHO05D005632 4.3e-07 59.3 53 47.2


User provided reference genes

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