Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16901 Striga asiatica HOM05D007064 ORTHO05D008772 4.8e-238 827.4 412 100.0
Migut.F00087 Erythranthe guttata HOM05D007064 ORTHO05D008772 3.2e-189 665.2 413 79.4
SalBow4G1574 Salvia bowleyana HOM05D007064 ORTHO05D008772 3.1e-168 595.5 417 73.1
CSS0020222 Camellia sinensis var. sinensis HOM05D007064 ORTHO05D008772 1.5e-167 593.2 410 72.0
CSS0020425 Camellia sinensis var. sinensis HOM05D007064 ORTHO05D008772 5.8e-167 591.3 410 72.0
SalBow4G1678 Salvia bowleyana HOM05D007064 ORTHO05D008772 1.3e-166 590.1 423 72.1
PGSC0003DMG400003147 Solanum tuberosum HOM05D007064 ORTHO05D008772 5.1e-163 578.2 410 70.7
Nitab4.5_0004530g0030 Nicotiana tabacum HOM05D007064 ORTHO05D008772 8.7e-163 577.4 394 71.8
Nitab4.5_0000021g0660 Nicotiana tabacum HOM05D007064 ORTHO05D008772 3.3e-162 575.5 394 71.6
Solyc03g097130.3 Solanum lycopersicum HOM05D007064 ORTHO05D008772 7.4e-162 574.3 393 72.3
Rhsim03G0222700 Rhododendron simsii HOM05D007064 ORTHO05D008772 2.8e-161 572.4 392 71.9
CAN.G1131.22 Capsicum annuum HOM05D007064 ORTHO05D008772 5.3e-160 568.2 384 71.9
QL09p023233 Quercus lobata HOM05D007064 ORTHO05D008772 6.9e-160 567.8 382 73.3
GSVIVG01024376001 Vitis vinifera HOM05D007064 ORTHO05D008772 3.4e-159 565.5 415 68.7
CiPaw.05G216200 Carya illinoinensis HOM05D007064 ORTHO05D008772 4.5e-159 565.1 375 72.5
Actinidia34318 Actinidia chinensis HOM05D007064 ORTHO05D008772 1.0e-158 563.9 376 73.1
TAR629G0708 Trochodendron aralioides HOM05D007064 ORTHO05D008772 1.4e-157 560.1 373 72.7
Thecc.05G215700 Theobroma cacao HOM05D007064 ORTHO05D008772 2.1e-156 556.2 371 72.5
FvH4_4g01950 Fragaria vesca HOM05D007064 ORTHO05D008772 3.6e-156 555.4 380 71.8
FAN12G0288 Fragaria x ananassa HOM05D007064 ORTHO05D008772 1.0e-155 553.9 391 70.3
Nn1g00178 Nelumbo nucifera HOM05D007064 ORTHO05D008772 1.8e-155 553.1 373 71.8
RcHm_v2.0_Chr4g0388921 Rosa chinensis HOM05D007064 ORTHO05D008772 1.8e-155 553.1 380 71.3
MD13G1202900 Malus domestica HOM05D007064 ORTHO05D008772 2.3e-155 552.7 374 73.0
Ciclev10020357m.g Citrus clementina HOM05D007064 ORTHO05D008772 8.8e-155 550.8 418 67.5
Haze_00398 Corylus avellana HOM05D007064 ORTHO05D008772 1.1e-154 550.4 379 71.8
Cc02_g00210 Coffea canephora HOM05D007064 ORTHO05D008772 1.7e-153 546.6 389 70.2
COL.COLO4_15235 Corchorus olitorius HOM05D007064 ORTHO05D008772 5.3e-152 541.6 414 66.4
CANSAT78G1989 Cannabis sativa HOM05D007064 ORTHO05D008772 6.9e-152 541.2 413 65.9
Gohir.A11G303500 Gossypium hirsutum HOM05D007064 ORTHO05D008772 6.9e-152 541.2 369 70.2
Cfa016048 Carpinus fangiana HOM05D007064 ORTHO05D008772 2.0e-151 539.7 379 70.7
Atru.chr12.1880 Acer truncatum HOM05D007064 ORTHO05D008772 7.7e-151 537.7 417 66.7
Duzib106G1646 Durio zibethinus HOM05D007064 ORTHO05D008772 7.7e-151 537.7 400 66.2
Gorai.007G348800 Gossypium raimondii HOM05D007064 ORTHO05D008772 1.7e-150 536.6 369 69.6
Hund09801 Selenicereus undatus HOM05D007064 ORTHO05D000105 1.7e-150 536.6 402 66.9
CsaV3_3G050060 Cucumis sativus L. HOM05D007064 ORTHO05D008772 1.1e-149 533.9 382 67.5
Sc19g0000100 Simmondsia chinensis HOM05D007064 ORTHO05D008772 1.1e-149 533.9 377 68.7
TWI60G0820 Tripterygium wilfordii HOM05D007064 ORTHO05D008772 1.4e-149 533.5 375 69.3
PSO063G1297 Papaver somniferum HOM05D007064 ORTHO05D008772 1.2e-148 530.4 414 64.5
PSO782G0881 Papaver somniferum HOM05D007064 ORTHO05D008772 5.1e-147 525.0 421 63.9
ECA238G0775 Erigeron canadensis HOM05D007064 ORTHO05D008772 1.5e-146 523.5 378 67.7
Aqoxy3G02225 Aquilegia oxysepala HOM05D007064 ORTHO05D008772 2.6e-146 522.7 371 68.2
Thhalv10013656m.g Eutrema salsugineum HOM05D007064 ORTHO05D008772 4.4e-146 521.9 369 69.1
Ah.04g156400 Amaranthus hybridus HOM05D007064 ORTHO05D008772 9.7e-146 520.8 368 66.3
Sabra19G0062000 Salix brachista HOM05D007064 ORTHO05D008772 9.7e-146 520.8 380 70.5
arahy.Tifrunner.gnm1.ann1.P291P9 Arachis hypogaea HOM05D007064 ORTHO05D008772 1.3e-145 520.4 375 67.7
AT5G16810 Arabidopsis thaliana HOM05D007064 ORTHO05D008772 2.8e-145 519.2 381 66.9
AL6G27830 Arabidopsis lyrata HOM05D007064 ORTHO05D008772 4.8e-145 518.5 381 67.5
Phvul.002G040600 Phaseolus vulgaris HOM05D007064 ORTHO05D008772 8.2e-145 517.7 364 68.1
arahy.Tifrunner.gnm1.ann1.EDBW82 Arachis hypogaea HOM05D007064 ORTHO05D008772 1.8e-144 516.5 400 64.5
EL10Ac3g05060 Beta vulgaris HOM05D007064 ORTHO05D008772 2.4e-144 516.2 396 64.1
VMungo1215G2591 Vigna mungo HOM05D007064 ORTHO05D008772 2.4e-144 516.2 364 68.1
AUR62028195 Chenopodium quinoa HOM05D007064 ORTHO05D008772 3.1e-144 515.8 372 66.9
Sp6g27320 Schrenkiella parvula HOM05D007064 ORTHO05D008772 3.1e-144 515.8 369 67.8
Lsat_1_v5_gn_2_95061 Lactuca sativa HOM05D007064 ORTHO05D008772 5.3e-144 515.0 408 63.7
HanXRQChr14g0451581 Helianthus annuus HOM05D007064 ORTHO05D008772 1.5e-143 513.5 377 66.8
BolC2t06775H Brassica oleracea HOM05D007064 ORTHO05D008772 3.5e-143 512.3 389 65.3
Glyma.11G009700 Glycine max HOM05D007064 ORTHO05D008772 3.5e-143 512.3 364 67.9
BcaC03g18516 Brassica carinata HOM05D007064 ORTHO05D008772 5.9e-143 511.5 389 65.3
C02p08600 Brassica napus HOM05D007064 ORTHO05D008772 5.9e-143 511.5 389 65.3
THA.LOC104820893 Tarenaya hassleriana HOM05D007064 ORTHO05D008772 1.0e-142 510.8 399 64.2
Lalb_Chr09g0320151 Lupinus albus HOM05D007064 ORTHO05D008772 4.7e-140 501.9 372 66.1
TWI60G1094 Tripterygium wilfordii HOM05D007064 ORTHO05D008772 2.3e-139 499.6 354 69.2
ATR0829G191 Amborella trichopoda HOM05D007064 ORTHO05D008772 2.0e-138 496.5 385 63.9
LjContig00222g0020502 Lotus japonicus HOM05D007064 ORTHO05D008772 4.4e-138 495.4 371 66.3
BcaNung04953 Brassica carinata HOM05D007064 ORTHO05D008772 7.5e-138 494.6 369 66.1
ClCG09G013090 Citrullus lanatus HOM05D007064 ORTHO05D008772 1.1e-136 490.7 384 63.5
Dinv17250 Davidia involucrata HOM05D007064 ORTHO05D008772 3.1e-136 489.2 323 73.7
BraA02t05344Z Brassica rapa HOM05D007064 ORTHO05D008772 9.1e-136 487.6 375 64.8
Ca_24438_v3 Cicer arietinum L. HOM05D007064 ORTHO05D008772 1.2e-135 487.3 368 65.5
Medtr5g006230 Medicago truncatula HOM05D007064 ORTHO05D008772 2.0e-135 486.5 364 66.8
Gohir.D11G318800 Gossypium hirsutum HOM05D007064 ORTHO05D008772 3.5e-135 485.7 339 68.7
Zm00001eb187800 Zea mays HOM05D007064 ORTHO05D008772 4.5e-135 485.3 392 62.2
Os02g0694800 Oryza sativa ssp. japonica HOM05D007064 ORTHO05D008772 2.9e-134 482.6 393 62.8
Aa31LG11G12770 Aethionema arabicum HOM05D007064 ORTHO05D008772 8.5e-134 481.1 400 61.5
A02p03790 Brassica napus HOM05D007064 ORTHO05D008772 1.9e-133 479.9 377 63.4
Peaxi162Scf00516g00675 Petunia axillaris HOM05D007064 ORTHO05D008772 5.5e-133 478.4 391 63.7
TPR.G37970 Trifolium pratense HOM05D007064 ORTHO05D008772 9.4e-133 477.6 365 65.5
AUR62002078 Chenopodium quinoa HOM05D007064 ORTHO05D008772 1.6e-132 476.9 387 62.3
Lj1A1033T73 Lonicera japonica HOM05D007064 ORTHO05D008772 5.7e-130 468.4 321 71.0
Prupe.1G025200 Prunus persica HOM05D007064 ORTHO05D008772 4.8e-129 465.3 322 70.8
HPP92_025673 Vanilla planifolia HOM05D007064 ORTHO05D008772 1.1e-128 464.2 377 62.3
CDE11G0292 Ceratophyllum demersum HOM05D007064 ORTHO05D008772 6.1e-124 448.4 368 61.1
MELO3C003312.2 Cucumis melo HOM05D007064 ORTHO05D008772 2.0e-122 443.4 356 62.6
SEGI_11081 Sequoiadendron giganteum HOM05D007064 ORTHO05D008772 4.4e-122 442.2 405 56.0
vmacro06523 Vaccinium macrocarpon HOM05D007064 ORTHO05D008772 1.7e-121 440.3 406 57.6
Sopen03g027870 Solanum pennellii HOM05D007064 ORTHO05D008772 1.7e-118 430.3 281 73.7
Hma1.2p1_0649F.1_g195260 Hydrangea macrophylla HOM05D007064 ORTHO05D008772 4.3e-117 425.6 279 73.8
Potri.019G050500 Populus trichocarpa HOM05D007064 ORTHO05D008772 1.4e-112 410.6 349 63.3
Sed0013285 Sechium edule HOM05D007064 ORTHO05D008772 4.1e-112 409.1 288 66.0
Manes.09G127400 Manihot esculenta HOM05D007064 ORTHO05D008772 3.5e-111 406.0 330 63.9
Psat2g189080 Pisum sativum HOM05D007064 ORTHO05D008772 2.0e-106 390.2 316 63.3
Eucgr.K00080 Eucalyptus grandis HOM05D007064 ORTHO05D008772 1.1e-104 384.4 260 70.4
Carub.0006s1503 Capsella rubella HOM05D007064 ORTHO05D008772 1.0e-102 377.9 278 67.3
Pp3c23_10770 Physcomitrium patens HOM05D007064 ORTHO05D008772 3.9e-102 375.9 460 45.0
Oeu038089.3 Olea europaea HOM05D007064 ORTHO05D008772 3.3e-101 372.9 391 53.7
CARHR196350 Cardamine hirsuta HOM05D007064 ORTHO05D008772 1.3e-97 360.9 287 61.7
Glyma.01G233100 Glycine max HOM05D007064 ORTHO05D008772 1.7e-97 360.5 320 58.1
Mapoly0096s0061 Marchantia polymorpha HOM05D007064 ORTHO05D008772 1.1e-96 357.8 398 48.0
AagrBONN_evm.TU.Sc2ySwM_344.2887 Anthoceros agrestis HOM05D007064 ORTHO05D008772 4.6e-71 272.7 338 45.3
SMO343G0012 Selaginella moellendorffii HOM05D007064 ORTHO05D008772 1.8e-54 217.6 409 36.4
Cpa.g.sc43.97 Carica papaya HOM05D007064 ORTHO05D008772 8.7e-46 188.7 134 67.9
Psat0s4094g0040 Pisum sativum HOM05D007064 ORTHO05D008772 1.4e-40 171.4 103 75.7
CBR_g8898 Chara braunii HOM05D007064 ORTHO05D008772 7.9e-39 165.6 121 62.0
CBR_g8900 Chara braunii HOM05D007064 ORTHO05D000002 7.4e-37 159.1 210 42.9
Oeu043948.1 Olea europaea HOM05D007064 ORTHO05D008772 4.1e-27 126.7 82 72.0
Cpa.g.sc43.98 Carica papaya HOM05D007064 ORTHO05D008772 2.0e-26 124.4 69 82.6
Lj1A1033G66 Lonicera japonica HOM05D007064 ORTHO05D008772 3.5e-18 97.1 52 84.6
TPR.G40530 Trifolium pratense HOM05D007064 ORTHO05D008772 2.2e-17 94.4 51 80.4
HanXRQChr01g0005821 Helianthus annuus HOM05D007064 ORTHO05D008772 3.6e-15 87.0 70 55.7
HanXRQChr12g0364801 Helianthus annuus HOM05D002406 ORTHO05D007964 4.1e-11 73.6 311 25.1
TAR629G2259 Trochodendron aralioides HOM05D002406 ORTHO05D007964 1.2e-10 72.0 308 24.7
PRCOL_00004348 Prasinoderma coloniale HOM05D007064 ORTHO05D008772 2.7e-10 70.9 267 26.6
ATR0681G159 Amborella trichopoda HOM05D002406 ORTHO05D007964 3.5e-10 70.5 312 25.0
Nn4g23734 Nelumbo nucifera HOM05D002406 ORTHO05D007964 7.7e-10 69.3 311 23.8
CBR_g6359 Chara braunii HOM05D007064 ORTHO05D008772 1.0e-09 68.9 113 35.4
Lsat_1_v5_gn_8_38401 Lactuca sativa HOM05D002406 ORTHO05D007964 1.0e-09 68.9 311 25.4
SMO364G0095 Selaginella moellendorffii HOM05D002406 ORTHO05D007964 1.0e-09 68.9 369 23.8
SGA_v2.0_scaffold14G06823 Striga asiatica HOM05D002406 ORTHO05D007964 1.3e-09 68.6 253 25.3
Duzib251G0875 Durio zibethinus HOM05D002406 ORTHO05D007964 1.7e-09 68.2 259 25.1
CDE02G2223 Ceratophyllum demersum HOM05D002406 ORTHO05D007964 2.2e-09 67.8 260 25.4
COL.COLO4_07869 Corchorus olitorius HOM05D002406 ORTHO05D007964 2.2e-09 67.8 260 24.2
ECA233G4417 Erigeron canadensis HOM05D002406 ORTHO05D007964 2.2e-09 67.8 312 24.4
Gohir.A12G170300 Gossypium hirsutum HOM05D002406 ORTHO05D007964 2.2e-09 67.8 259 24.7
CDE09G1163 Ceratophyllum demersum HOM05D002406 ORTHO05D007964 3.8e-09 67.0 255 24.7
Atru.chr11.1356 Acer truncatum HOM05D002406 ORTHO05D007964 1.1e-08 65.5 253 25.3
HPP92_009835 Vanilla planifolia HOM05D002406 ORTHO05D007964 1.5e-08 65.1 251 25.1
Glyma.02G100000 Glycine max HOM05D002406 ORTHO05D007964 1.9e-08 64.7 253 24.5
Ciclev10031094m.g Citrus clementina HOM05D002406 ORTHO05D007964 3.2e-08 63.9 253 24.9
Gohir.D12G170600 Gossypium hirsutum HOM05D002406 ORTHO05D007964 3.2e-08 63.9 259 24.3
Gorai.008G183200 Gossypium raimondii HOM05D002406 ORTHO05D007964 3.2e-08 63.9 259 24.3
TAR371G0458 Trochodendron aralioides HOM05D002406 ORTHO05D007964 4.2e-08 63.5 310 23.2
CiPaw.15G003700 Carya illinoinensis HOM05D002406 ORTHO05D007964 5.5e-08 63.2 253 24.5
Cc11_g10600 Coffea canephora HOM05D002406 ORTHO05D007964 5.5e-08 63.2 257 25.7
CsaV3_5G025330 Cucumis sativus L. HOM05D002406 ORTHO05D007964 5.5e-08 63.2 251 24.3
MBI13_g34060_MAGBIO Magnolia biondii HOM05D002406 ORTHO05D007964 5.5e-08 63.2 256 24.2
Aqoxy3G03911 Aquilegia oxysepala HOM05D002406 ORTHO05D007964 9.5e-08 62.4 311 24.1
Thecc.02G360900 Theobroma cacao HOM05D002406 ORTHO05D007964 9.5e-08 62.4 253 23.7
Glyma.01G087900 Glycine max HOM05D002406 ORTHO05D007964 1.2e-07 62.0 253 23.7
QL01p045302 Quercus lobata HOM05D002406 ORTHO05D007964 1.2e-07 62.0 263 24.3
PSO063G1488 Papaver somniferum HOM05D002406 ORTHO05D007964 1.6e-07 61.6 253 24.1
PSO782G1356 Papaver somniferum HOM05D002406 ORTHO05D007964 1.6e-07 61.6 253 24.1
CSS0033832 Camellia sinensis var. sinensis HOM05D002406 ORTHO05D007964 2.1e-07 61.2 250 23.2
Pp3c26_5140 Physcomitrium patens HOM05D002406 ORTHO05D007964 2.1e-07 61.2 257 24.1
Sed0011685 Sechium edule HOM05D002406 ORTHO05D007964 2.7e-07 60.8 251 23.5
TWI31G1069 Tripterygium wilfordii HOM05D002406 ORTHO05D007964 2.7e-07 60.8 254 24.4
PGR119G0491 Punica granatum HOM05D002406 ORTHO05D007964 3.6e-07 60.5 254 23.6
MELO3C002949.2 Cucumis melo HOM05D002406 ORTHO05D007964 4.7e-07 60.1 251 23.5
ClCG03G009900 Citrullus lanatus HOM05D002406 ORTHO05D007964 6.1e-07 59.7 251 23.5
Sc04g0006710 Simmondsia chinensis HOM05D002406 ORTHO05D007964 1.0e-06 58.9 259 23.9
vmacro06524 Vaccinium macrocarpon HOM05D007064 ORTHO05D008772 1.4e-06 58.5 27 92.6
Lj3A1020T56 Lonicera japonica HOM05D002406 ORTHO05D007964 2.3e-06 57.8 253 23.7
MCO05G602 Micromonas commoda HOM05D007064 ORTHO05D008772 6.8e-06 56.2 202 24.3
Nitab4.5_0009248g0010 Nicotiana tabacum HOM05D002406 ORTHO05D007964 8.8e-06 55.8 264 23.1
Peaxi162Scf00004g00138 Petunia axillaris HOM05D002406 ORTHO05D007964 8.8e-06 55.8 250 23.6


User provided reference genes

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