Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 1.5e-51 206.1 116 100.0
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 7.2e-30 134.0 116 73.3
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.7e-29 131.3 118 69.5
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 1.3e-26 123.2 116 68.1
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.6e-24 115.5 119 65.5
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 1.2e-19 100.1 117 53.8
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 7.5e-19 97.4 105 56.2
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 4.8e-18 94.7 114 53.5
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 4.8e-18 94.7 103 60.2
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 6.3e-18 94.4 120 53.3
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 6.3e-18 94.4 113 54.0
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 6.3e-18 94.4 96 62.5
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 1.4e-17 93.2 85 62.4
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 1.4e-17 93.2 120 53.3
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 1.8e-17 92.8 124 53.2
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.8e-17 92.8 102 56.9
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 3.1e-17 92.0 82 64.6
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 3.1e-17 92.0 122 50.0
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 4.1e-17 91.7 84 65.5
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 4.1e-17 91.7 103 55.3
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 4.1e-17 91.7 106 53.8
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.1e-17 91.7 95 58.9
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 5.3e-17 91.3 115 53.9
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 7.0e-17 90.9 97 58.8
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 1.2e-16 90.1 112 53.6
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 1.2e-16 90.1 81 63.0
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.7e-16 89.0 88 59.1
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.7e-16 89.0 88 59.1
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 3.5e-16 88.6 82 63.4
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 3.5e-16 88.6 82 63.4
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 7.7e-16 87.4 88 59.1
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 7.7e-16 87.4 88 59.1
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.0e-15 87.0 87 59.8
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 1.7e-15 86.3 86 62.8
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 2.2e-15 85.9 87 59.8
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.2e-15 85.9 92 58.7
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.9e-15 85.5 88 56.8
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 2.9e-15 85.5 79 62.0
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 3.8e-15 85.1 90 58.9
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 3.8e-15 85.1 121 49.6
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 5.0e-15 84.7 122 48.4
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 5.0e-15 84.7 108 56.5
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 6.5e-15 84.3 115 51.3
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 8.5e-15 84.0 104 49.0
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 8.5e-15 84.0 90 55.6
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 8.5e-15 84.0 84 59.5
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 1.5e-14 83.2 92 55.4
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 1.9e-14 82.8 87 57.5
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 1.9e-14 82.8 113 50.4
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 1.9e-14 82.8 91 57.1
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.9e-14 82.8 82 58.5
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 1.9e-14 82.8 86 60.5
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 2.5e-14 82.4 107 50.5
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.5e-14 82.4 120 51.7
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 3.2e-14 82.0 88 58.0
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 3.2e-14 82.0 88 58.0
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 3.2e-14 82.0 82 61.0
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 7.2e-14 80.9 81 59.3
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 7.2e-14 80.9 110 50.0
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 7.2e-14 80.9 91 56.0
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 9.4e-14 80.5 116 48.3
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.6e-13 79.7 77 61.0
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 1.6e-13 79.7 113 50.4
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.1e-13 79.3 113 48.7
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 2.1e-13 79.3 75 64.0
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 2.1e-13 79.3 83 59.0
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 2.7e-13 79.0 105 53.3
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 2.7e-13 79.0 111 48.6
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 2.7e-13 79.0 75 62.7
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 3.6e-13 78.6 85 52.9
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 4.7e-13 78.2 112 51.8
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 4.7e-13 78.2 81 55.6
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 4.7e-13 78.2 113 50.4
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 6.1e-13 77.8 73 63.0
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 6.1e-13 77.8 107 47.7
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 8.0e-13 77.4 90 57.8
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 8.0e-13 77.4 88 54.5
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 8.0e-13 77.4 76 57.9
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 1.0e-12 77.0 88 55.7
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.0e-12 77.0 87 56.3
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.4e-12 76.6 94 55.3
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.8e-12 76.3 87 49.4
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 1.8e-12 76.3 79 57.0
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.8e-12 76.3 91 53.8
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.8e-12 76.3 91 53.8
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 2.3e-12 75.9 114 47.4
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 2.3e-12 75.9 82 59.8
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 2.3e-12 75.9 88 53.4
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.3e-12 75.9 113 50.4
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 3.0e-12 75.5 86 54.7
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 3.0e-12 75.5 86 54.7
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 3.0e-12 75.5 82 56.1
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 3.0e-12 75.5 79 57.0
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 3.0e-12 75.5 79 58.2
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 4.0e-12 75.1 103 53.4
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 4.0e-12 75.1 98 51.0
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 6.8e-12 74.3 108 47.2
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 8.8e-12 73.9 98 56.1
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 8.8e-12 73.9 92 51.1
Os10g0509600 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 8.8e-12 73.9 84 57.1
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 8.8e-12 73.9 116 47.4
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 1.2e-11 73.6 112 46.4
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.5e-11 73.2 90 51.1
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.0e-11 72.8 90 53.3
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 2.0e-11 72.8 89 49.4
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 2.6e-11 72.4 88 52.3
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.4e-11 72.0 111 45.9
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 4.4e-11 71.6 73 60.3
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 4.4e-11 71.6 84 51.2
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 4.4e-11 71.6 111 46.8
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 5.7e-11 71.2 88 51.1
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 9.8e-11 70.5 108 45.4
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 9.8e-11 70.5 111 45.0
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.3e-10 70.1 82 57.3
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 1.7e-10 69.7 118 45.8
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 2.8e-10 68.9 111 44.1
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 2.8e-10 68.9 68 58.8
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 3.7e-10 68.6 91 54.9
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.8e-10 68.2 108 44.4
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 4.8e-10 68.2 108 44.4
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 6.3e-10 67.8 99 47.5
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 1.1e-09 67.0 75 57.3
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 4.1e-09 65.1 63 57.1
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 4.1e-09 65.1 116 40.5
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 1.2e-08 63.5 110 45.5
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 1.2e-08 63.5 82 53.7
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 2.0e-08 62.8 65 52.3
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 2.0e-08 62.8 72 54.2
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.7e-08 62.4 54 66.7
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 2.7e-08 62.4 114 41.2
Zm00001eb231110 Zea mays HOM05D003381 ORTHO05D003880 2.7e-08 62.4 105 44.8
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 3.5e-08 62.0 83 49.4
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 3.5e-08 62.0 75 53.3
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 5.9e-08 61.2 93 46.2
Os10g0509401 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 5.9e-08 61.2 96 51.0
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 1.0e-07 60.5 73 53.4
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 1.0e-07 60.5 83 47.0
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.3e-07 60.1 75 50.7
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 1.3e-07 60.1 75 50.7
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 1.3e-07 60.1 75 50.7
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.7e-07 59.7 75 50.7
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 1.7e-07 59.7 75 49.3
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 1.7e-07 59.7 75 50.7
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 2.3e-07 59.3 86 46.5
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 2.3e-07 59.3 55 65.5
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 2.3e-07 59.3 91 44.0
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 3.8e-07 58.5 81 46.9
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 6.6e-07 57.8 88 46.6
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 8.6e-07 57.4 74 54.1
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 8.6e-07 57.4 92 45.7
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.1e-06 57.0 75 49.3
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.1e-06 57.0 75 48.0
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 1.1e-06 57.0 75 48.0
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.5e-06 56.6 87 43.7
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.5e-06 56.6 75 48.0
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.5e-06 56.6 117 39.3
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 1.9e-06 56.2 92 44.6
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 2.5e-06 55.8 75 48.0
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.5e-06 55.8 86 41.9
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.5e-06 55.8 75 48.0
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 3.3e-06 55.5 75 46.7
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 4.2e-06 55.1 75 46.7
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 4.2e-06 55.1 75 46.7
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 4.2e-06 55.1 75 46.7
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 4.2e-06 55.1 75 46.7
SEGI_32370 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 4.2e-06 55.1 81 45.7
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 5.5e-06 54.7 75 46.7
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 5.5e-06 54.7 92 43.5
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 5.5e-06 54.7 75 46.7
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 5.5e-06 54.7 75 46.7
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 5.5e-06 54.7 75 46.7
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 5.5e-06 54.7 75 46.7
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 7.2e-06 54.3 86 44.2
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 7.2e-06 54.3 92 43.5
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 7.2e-06 54.3 92 43.5
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 7.2e-06 54.3 92 43.5
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 7.2e-06 54.3 74 47.3
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 9.5e-06 53.9 75 45.3
Duzib068G1330 Durio zibethinus HOM05D003381 ORTHO05D003880 9.5e-06 53.9 94 43.6
Thecc.03G212300 Theobroma cacao HOM05D003381 ORTHO05D003880 9.5e-06 53.9 108 40.7


User provided reference genes

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