Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 1.3e-102 376.3 176 100.0
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 5.7e-79 297.7 168 82.7
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 8.3e-70 267.3 161 76.4
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.4e-69 266.5 147 83.0
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 9.1e-69 263.8 147 81.6
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.2e-68 263.5 147 81.6
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 4.5e-68 261.5 147 81.6
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 4.5e-68 261.5 150 78.0
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 5.9e-68 261.2 147 81.6
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 3.8e-67 258.5 147 78.2
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 3.8e-67 258.5 147 80.3
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 3.8e-67 258.5 147 79.6
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 3.8e-67 258.5 147 79.6
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 5.0e-67 258.1 147 80.3
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 5.0e-67 258.1 147 79.6
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 1.5e-66 256.5 148 80.4
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 1.5e-66 256.5 148 77.0
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 1.9e-66 256.1 147 78.2
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 3.2e-66 255.4 148 81.1
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 3.2e-66 255.4 147 81.0
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 4.2e-66 255.0 146 78.1
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 7.2e-66 254.2 147 78.2
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 7.2e-66 254.2 147 78.9
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.2e-65 253.4 147 78.9
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 2.8e-65 252.3 148 78.4
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 6.1e-65 251.1 147 77.6
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 1.8e-64 249.6 153 73.9
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.8e-64 249.6 151 78.8
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.8e-64 249.6 147 78.9
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 4.0e-64 248.4 147 77.6
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 4.0e-64 248.4 147 77.6
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 4.0e-64 248.4 147 76.2
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 4.0e-64 248.4 148 75.0
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 5.2e-64 248.1 137 81.8
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 6.8e-64 247.7 144 78.5
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 1.2e-63 246.9 149 79.2
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 2.0e-63 246.1 147 75.5
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.6e-63 245.7 147 75.5
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 3.4e-63 245.4 147 74.1
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 4.4e-63 245.0 144 77.1
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 5.7e-63 244.6 148 73.6
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 5.7e-63 244.6 148 73.6
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 7.5e-63 244.2 147 74.8
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 9.8e-63 243.8 148 76.4
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 9.8e-63 243.8 148 76.4
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.3e-62 243.4 147 74.8
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.7e-62 243.0 147 76.2
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.7e-62 243.0 148 73.6
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.8e-62 242.3 149 75.8
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 2.8e-62 242.3 147 77.6
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 3.7e-62 241.9 149 75.2
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 4.9e-62 241.5 147 74.8
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 6.3e-62 241.1 147 74.8
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 8.3e-62 240.7 147 74.1
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 8.3e-62 240.7 147 76.2
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 8.3e-62 240.7 149 76.5
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.1e-61 240.4 148 74.3
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 1.8e-61 239.6 141 76.6
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.8e-61 239.6 149 77.2
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 3.1e-61 238.8 147 73.5
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 5.4e-61 238.0 147 72.8
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 9.2e-61 237.3 147 73.5
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 9.2e-61 237.3 147 74.1
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 9.2e-61 237.3 145 75.9
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.2e-60 236.9 144 74.3
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 1.6e-60 236.5 149 75.2
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 2.7e-60 235.7 152 75.0
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 3.5e-60 235.3 149 75.2
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 5.9e-60 234.6 150 72.7
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 7.8e-60 234.2 147 71.4
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 7.8e-60 234.2 148 75.7
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.0e-59 233.8 147 72.1
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.0e-59 233.8 147 72.1
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.0e-59 233.8 147 72.1
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.0e-59 233.8 147 71.4
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.7e-59 233.0 147 72.8
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.7e-59 233.0 150 71.3
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 2.3e-59 232.6 147 73.5
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.9e-59 232.3 150 72.7
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 5.0e-59 231.5 147 71.4
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 6.6e-59 231.1 147 72.1
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 6.6e-59 231.1 148 73.6
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 6.6e-59 231.1 147 72.1
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 6.6e-59 231.1 147 72.8
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 6.6e-59 231.1 148 72.3
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 1.1e-58 230.3 147 70.7
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.5e-58 229.9 148 73.0
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 2.5e-58 229.2 147 72.1
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 2.5e-58 229.2 150 74.0
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.5e-58 229.2 133 75.9
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.5e-58 229.2 133 75.9
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 2.5e-58 229.2 144 72.9
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 2.5e-58 229.2 149 69.8
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 3.3e-58 228.8 150 72.7
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 3.3e-58 228.8 147 69.4
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.3e-58 228.8 148 73.6
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 7.3e-58 227.6 133 75.9
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.6e-57 226.5 131 78.6
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 1.6e-57 226.5 149 73.2
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.6e-57 226.5 149 70.5
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 3.6e-57 225.3 151 72.2
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 3.6e-57 225.3 147 68.7
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 4.7e-57 224.9 147 68.7
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 6.1e-57 224.6 141 72.3
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 8.0e-57 224.2 148 74.3
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.4e-56 223.4 147 68.0
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.4e-56 223.4 150 71.3
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.8e-56 223.0 145 73.1
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 4.0e-56 221.9 147 69.4
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 4.4e-55 218.4 147 74.8
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 9.8e-55 217.2 147 66.7
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.3e-54 216.9 151 72.2
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 2.9e-54 215.7 148 70.3
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 2.9e-54 215.7 148 70.3
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 4.9e-54 214.9 148 70.9
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 4.9e-54 214.9 148 70.9
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 2.4e-53 212.6 126 73.0
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 7.0e-53 211.1 151 68.9
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 7.0e-53 211.1 140 71.4
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 9.2e-53 210.7 148 68.2
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 9.2e-53 210.7 144 67.4
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 2.0e-52 209.5 132 71.2
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 4.6e-52 208.4 150 67.3
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 4.6e-52 208.4 150 67.3
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 4.6e-52 208.4 150 67.3
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.7e-51 206.5 139 73.4
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 2.3e-51 206.1 151 66.9
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 2.3e-51 206.1 151 66.9
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 3.0e-51 205.7 150 66.7
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 5.0e-51 204.9 131 71.0
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 6.6e-51 204.5 152 65.8
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 8.6e-51 204.1 119 74.8
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 1.5e-50 203.4 150 66.7
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 2.5e-50 202.6 150 65.3
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 4.3e-50 201.8 147 66.0
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.2e-49 200.3 149 67.1
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.2e-49 200.3 149 67.1
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.2e-49 200.3 149 67.1
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 2.8e-49 199.1 135 72.6
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.1e-48 197.2 121 72.7
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 1.5e-47 193.4 147 66.7
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 8.3e-46 187.6 147 63.3
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 9.5e-42 174.1 147 59.9
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.0e-39 166.4 147 58.5
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 4.1e-37 158.7 147 59.9
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 3.0e-35 152.5 102 71.6
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 3.0e-35 152.5 137 55.5
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 6.6e-35 151.4 98 77.6
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 8.6e-35 151.0 158 51.9
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 5.6e-34 148.3 102 68.6
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 1.3e-27 127.1 148 49.3
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 6.9e-24 114.8 128 49.2
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 4.6e-20 102.1 68 69.1
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 1.7e-19 100.1 89 53.9
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 4.3e-18 95.5 76 63.2
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 4.6e-12 75.5 43 69.8
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 6.7e-11 71.6 91 36.3
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 4.9e-06 55.5 66 36.4


User provided reference genes

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