Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 6.9e-262 906.7 452 100.0
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 3.4e-208 728.4 429 82.3
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 8.3e-207 723.8 429 80.9
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 2.3e-204 715.7 425 79.5
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 2.6e-200 702.2 429 78.8
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 7.8e-197 690.6 435 77.9
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 1.3e-196 689.9 431 76.8
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 2.3e-196 689.1 429 76.9
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 9.5e-195 683.7 426 77.9
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.3e-193 679.1 431 76.1
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.1e-193 678.7 430 76.5
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 7.5e-192 674.1 408 78.9
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 7.5e-192 674.1 425 77.4
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.3e-191 673.3 434 75.3
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 1.7e-191 672.9 431 74.9
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.7e-191 672.9 426 76.8
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.2e-191 672.5 431 76.6
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 2.2e-191 672.5 431 74.7
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 4.9e-191 671.4 429 74.8
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 1.4e-190 669.8 430 74.7
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 1.4e-190 669.8 430 74.7
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.4e-190 669.8 423 76.4
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.2e-190 668.7 431 76.1
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 4.1e-190 668.3 431 76.3
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 4.1e-190 668.3 431 75.2
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 7.0e-190 667.5 430 74.4
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 1.6e-189 666.4 430 75.8
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 2.0e-189 666.0 465 72.0
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 4.6e-189 664.8 412 76.5
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 4.6e-189 664.8 442 73.3
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 1.3e-188 663.3 408 77.2
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.7e-188 662.9 430 74.4
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 2.3e-188 662.5 435 74.7
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.0e-188 662.1 423 75.2
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 3.9e-188 661.8 430 74.4
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 3.9e-188 661.8 436 74.1
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 5.0e-188 661.4 430 75.6
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.9e-187 659.4 430 74.7
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 5.6e-187 657.9 430 73.7
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 7.3e-187 657.5 437 74.4
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.6e-186 656.4 431 74.5
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 1.6e-186 656.4 434 72.8
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.6e-186 656.4 437 74.4
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 4.7e-186 654.8 430 75.1
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 8.1e-186 654.1 426 73.5
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 8.1e-186 654.1 426 73.5
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.0e-185 651.7 425 74.4
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 8.9e-185 650.6 427 74.9
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 1.2e-184 650.2 408 75.7
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 4.4e-184 648.3 429 73.2
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 5.8e-184 647.9 408 75.2
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 5.8e-184 647.9 437 73.0
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 9.9e-184 647.1 420 73.8
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.3e-183 646.7 430 72.8
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.3e-183 646.7 429 71.8
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.3e-183 646.7 429 71.8
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.3e-183 646.7 425 73.4
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.3e-183 646.7 425 73.4
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 2.9e-183 645.6 430 71.6
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 3.7e-183 645.2 408 75.0
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 4.9e-183 644.8 430 72.8
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 6.4e-183 644.4 436 72.2
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 8.3e-183 644.0 429 71.1
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 1.1e-182 643.7 429 71.8
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 1.9e-182 642.9 430 71.6
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 2.4e-182 642.5 429 71.1
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.1e-182 641.7 431 72.6
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 9.2e-182 640.6 430 73.0
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.2e-181 640.2 430 72.1
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.2e-181 640.2 430 71.6
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.2e-181 640.2 427 72.6
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.6e-181 639.8 429 70.6
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.6e-181 639.8 429 70.6
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 2.1e-181 639.4 433 70.7
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 2.1e-181 639.4 431 73.5
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 2.7e-181 639.0 408 73.3
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 2.7e-181 639.0 426 72.3
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 3.5e-181 638.6 426 72.1
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 6.0e-181 637.9 435 71.5
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 7.8e-181 637.5 433 70.4
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.0e-180 637.1 434 70.5
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 1.7e-180 636.3 430 71.6
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 5.1e-180 634.8 408 73.8
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 6.6e-180 634.4 416 72.8
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 6.6e-180 634.4 455 69.9
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 1.5e-179 633.3 426 72.3
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.5e-179 633.3 426 72.3
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 2.5e-179 632.5 426 71.8
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 3.3e-179 632.1 435 70.8
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 4.3e-179 631.7 408 74.8
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 4.3e-179 631.7 408 74.8
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 5.6e-179 631.3 429 70.2
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 1.6e-178 629.8 416 73.1
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 2.1e-178 629.4 414 73.4
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 2.1e-178 629.4 408 74.0
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 3.6e-178 628.6 423 72.8
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 4.0e-177 625.2 411 70.8
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 2.6e-176 622.5 408 71.6
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 3.4e-176 622.1 408 73.5
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 2.2e-175 619.4 431 70.3
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 4.9e-175 618.2 398 76.6
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 8.4e-175 617.5 408 73.3
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 1.4e-174 616.7 427 71.0
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 1.9e-174 616.3 427 71.0
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 3.2e-174 615.5 425 70.8
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 5.4e-174 614.8 431 68.9
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 9.2e-174 614.0 427 70.7
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 2.1e-173 612.8 430 69.3
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 3.5e-173 612.1 423 70.0
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 4.6e-173 611.7 432 68.8
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.0e-172 610.5 431 69.8
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 1.7e-172 609.8 416 70.9
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 1.7e-172 609.8 432 69.7
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 6.6e-172 607.8 433 70.9
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.9e-171 606.3 412 70.9
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 2.5e-171 605.9 432 68.3
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 3.3e-171 605.5 443 67.0
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 9.6e-171 604.0 384 75.5
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.1e-170 602.8 426 70.4
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 2.1e-170 602.8 425 67.8
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 2.8e-170 602.4 431 67.5
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 4.7e-170 601.7 443 66.6
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 2.4e-169 599.4 431 67.7
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 2.6e-168 595.9 431 66.6
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 7.6e-168 594.3 443 67.3
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 1.3e-167 593.6 409 69.9
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.2e-167 592.8 427 68.9
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 4.9e-167 591.7 431 67.1
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.9e-166 589.7 386 73.8
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 3.2e-166 589.0 386 74.1
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 9.3e-166 587.4 430 67.0
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 4.6e-165 585.1 425 67.8
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 1.7e-164 583.2 433 65.8
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 8.7e-164 580.9 428 65.4
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 8.7e-164 580.9 437 66.4
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.9e-163 579.7 391 72.6
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 2.5e-163 579.3 389 71.7
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.6e-162 575.5 408 70.6
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.5e-160 570.1 365 73.2
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 2.9e-159 565.8 387 70.5
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.6e-157 558.5 426 66.7
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 4.5e-152 542.0 355 73.8
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 2.6e-144 516.2 372 67.2
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 2.9e-143 512.7 412 61.4
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.5e-139 500.4 408 62.5
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.3e-139 498.8 408 60.8
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 7.2e-134 481.5 416 57.7
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 2.7e-133 479.6 426 61.0
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 7.4e-131 471.5 407 57.2
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 4.7e-125 452.2 265 78.5
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.8e-121 440.3 424 54.2
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 1.5e-115 420.6 314 66.2
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.2e-112 411.0 418 51.0
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 6.5e-103 378.6 273 66.3
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.5e-102 377.5 411 46.0
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 3.0e-100 369.8 235 74.5
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 4.5e-96 355.9 230 72.6
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 7.0e-89 332.0 365 45.5
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.4e-81 307.8 407 42.5
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.2e-69 268.1 272 57.4
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 3.0e-63 246.9 165 74.5
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 3.6e-53 213.4 131 77.1
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.2e-43 181.8 113 78.8
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.8e-43 179.5 127 67.7
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.1e-36 157.1 91 78.0
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 2.2e-34 151.0 414 28.7
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.8e-28 131.3 94 70.2
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 6.7e-23 112.8 75 70.7
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 2.0e-19 101.3 95 49.5
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 6.3e-13 79.7 62 61.3
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 9.4e-09 65.9 311 27.0
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.7e-08 64.3 43 69.8
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 3.6e-08 63.9 195 28.7
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 4.7e-08 63.5 51 66.7
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 6.1e-08 63.2 43 67.4
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 7.9e-08 62.8 313 26.2
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 2.3e-07 61.2 408 25.2
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.0e-06 58.2 91 31.9
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 4.4e-06 57.0 198 27.3


User provided reference genes

Program Settings