Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 4.4e-161 571.2 292 100.0
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 1.1e-127 460.3 295 80.3
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 3.1e-122 442.2 295 75.6
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 1.7e-120 436.4 293 75.1
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 2.7e-118 429.1 292 72.3
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 2.3e-117 426.0 295 72.5
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 2.3e-117 426.0 299 72.2
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 2.2e-115 419.5 295 71.2
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 4.8e-115 418.3 295 70.5
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 6.3e-115 417.9 295 71.2
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 1.8e-114 416.4 295 70.8
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 7.7e-113 411.0 295 68.8
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 2.5e-111 406.0 297 70.0
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 4.2e-111 405.2 295 70.8
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 2.1e-110 402.9 303 68.3
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 2.1e-110 402.9 305 67.9
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 2.1e-110 402.9 295 70.5
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 2.3e-109 399.4 305 67.9
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 2.3e-109 399.4 295 70.5
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 3.0e-109 399.1 302 67.2
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 3.0e-109 399.1 300 67.3
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 6.7e-109 397.9 295 69.8
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 8.8e-109 397.5 300 68.0
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 8.8e-109 397.5 300 67.7
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 8.8e-109 397.5 300 67.3
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 8.8e-109 397.5 303 67.3
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 8.8e-109 397.5 295 69.8
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 1.5e-108 396.7 300 67.7
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 1.5e-108 396.7 300 67.7
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 2.6e-108 396.0 306 66.7
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 7.4e-108 394.4 301 68.8
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 9.7e-108 394.0 300 67.0
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 1.3e-107 393.7 301 66.8
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 1.7e-107 393.3 312 66.0
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 2.2e-107 392.9 304 65.8
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 4.8e-107 391.7 302 67.9
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 4.8e-107 391.7 302 67.9
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 1.1e-106 390.6 312 65.4
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 1.1e-106 390.6 300 66.3
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 1.8e-106 389.8 298 65.8
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 3.1e-106 389.0 300 67.7
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 4.1e-106 388.7 297 68.7
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 7.0e-106 387.9 302 66.6
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 3.5e-105 385.6 314 64.6
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 4.5e-105 385.2 271 69.7
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 7.7e-105 384.4 331 61.9
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 7.7e-105 384.4 331 61.9
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 1.3e-104 383.6 296 65.5
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 1.3e-104 383.6 300 65.7
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 1.3e-104 383.6 310 66.1
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 1.3e-104 383.6 308 64.0
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 1.7e-104 383.3 341 59.5
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 2.2e-104 382.9 301 66.8
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 3.8e-104 382.1 312 63.1
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 5.0e-104 381.7 298 68.1
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 1.1e-103 380.6 312 63.1
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 1.1e-103 380.6 291 67.0
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 1.9e-103 379.8 284 69.0
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 2.5e-103 379.4 302 66.9
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 5.5e-103 378.3 287 65.5
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 1.6e-102 376.7 309 63.8
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 2.1e-102 376.3 269 68.4
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 4.7e-102 375.2 306 62.7
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 6.1e-102 374.8 271 67.9
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 6.1e-102 374.8 299 62.2
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 2.6e-100 369.4 306 62.7
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 3.3e-100 369.0 307 63.8
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 4.4e-100 368.6 305 63.9
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 4.4e-100 368.6 290 64.1
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 5.7e-100 368.2 306 63.1
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 5.7e-100 368.2 305 64.9
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 7.5e-100 367.9 306 62.7
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 1.7e-99 366.7 306 62.4
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 2.2e-99 366.3 305 63.9
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 2.8e-99 365.9 306 62.1
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 3.7e-99 365.5 306 62.4
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 3.7e-99 365.5 284 66.5
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 4.8e-99 365.2 307 61.6
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 4.8e-99 365.2 307 61.9
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 4.8e-99 365.2 271 66.1
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 6.3e-99 364.8 306 62.4
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 8.2e-99 364.4 307 61.9
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 8.2e-99 364.4 296 61.8
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 1.8e-98 363.2 306 61.4
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 2.4e-98 362.8 303 62.7
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 3.2e-95 352.4 335 57.3
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 1.6e-94 350.1 271 64.9
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 3.0e-93 345.9 319 59.2
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 5.7e-92 341.7 324 57.4
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 4.1e-90 335.5 314 58.9
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 1.7e-88 330.1 336 55.4
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 3.8e-88 328.9 306 58.5
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 1.2e-86 323.9 297 57.6
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 5.2e-85 318.5 306 54.9
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 1.4e-82 310.5 320 55.0
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 6.6e-80 301.6 220 68.2
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 3.0e-77 292.7 272 58.1
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 1.5e-76 290.4 233 66.5
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 2.6e-76 289.7 268 57.5
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 5.9e-73 278.5 237 61.2
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 1.8e-69 266.9 201 67.7
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 3.4e-68 262.7 278 51.4
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 2.4e-66 256.5 254 55.5
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 9.5e-63 244.6 293 47.1
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 6.8e-61 238.4 209 61.2
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 1.0e-56 224.6 263 45.6
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 6.4e-51 205.3 265 44.5
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 4.6e-49 199.1 312 39.4
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 2.3e-48 196.8 192 57.8
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 2.0e-44 183.7 169 61.5
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 1.3e-43 181.0 283 37.8
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 3.0e-40 169.9 233 43.3
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 3.9e-40 169.5 210 45.2
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 1.6e-30 137.5 207 40.1
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 6.2e-30 135.6 115 60.0
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.9e-26 124.0 195 42.1
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.2e-20 104.8 88 60.2
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 3.0e-16 90.1 74 59.5
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 2.5e-15 87.0 92 52.2
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 4.3e-15 86.3 76 56.6
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 5.7e-15 85.9 149 40.9
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 7.9e-09 65.5 79 53.2
SEGI_35321 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 4.8e-06 56.2 57 43.9


User provided reference genes

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