Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 1.3e-61 239.6 127 100.0
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.3e-40 169.9 105 84.8
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 2.1e-38 162.5 106 79.2
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 1.3e-35 153.3 119 72.3
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 4.8e-35 151.4 102 76.5
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 2.4e-34 149.1 102 73.5
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 4.0e-34 148.3 104 76.9
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 6.9e-34 147.5 102 74.5
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 9.0e-34 147.1 102 74.5
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 9.0e-34 147.1 100 73.0
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 9.0e-34 147.1 102 75.5
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 9.0e-34 147.1 102 75.5
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.2e-33 146.7 105 71.4
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.2e-33 146.7 102 69.6
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.5e-33 146.4 102 69.6
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.0e-33 146.0 102 74.5
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 2.0e-33 146.0 100 76.0
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 4.5e-33 144.8 101 72.3
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 5.8e-33 144.4 102 72.5
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 5.8e-33 144.4 105 72.4
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.6e-33 144.1 106 70.8
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 7.6e-33 144.1 102 74.5
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 9.9e-33 143.7 105 71.4
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 9.9e-33 143.7 102 73.5
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 9.9e-33 143.7 100 73.0
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.3e-32 143.3 100 72.0
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.3e-32 143.3 102 71.6
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.3e-32 143.3 105 70.5
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.3e-32 143.3 101 73.3
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.7e-32 142.9 105 70.5
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 2.2e-32 142.5 100 73.0
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 2.9e-32 142.1 128 60.9
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.4e-32 141.0 105 69.5
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 1.1e-31 140.2 105 68.6
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.1e-31 140.2 102 71.6
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.1e-31 140.2 102 72.5
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 1.4e-31 139.8 100 71.0
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 2.4e-31 139.0 100 74.0
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 2.4e-31 139.0 102 68.6
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.2e-31 138.7 105 71.4
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.2e-31 138.7 105 71.4
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 4.2e-31 138.3 105 66.7
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 4.2e-31 138.3 100 69.0
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 5.5e-31 137.9 100 71.0
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 7.1e-31 137.5 100 68.0
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 7.1e-31 137.5 100 69.0
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 7.1e-31 137.5 102 67.6
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 9.3e-31 137.1 105 66.7
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 9.3e-31 137.1 105 66.7
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 9.3e-31 137.1 105 66.7
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 9.3e-31 137.1 102 69.6
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 1.6e-30 136.3 105 67.6
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 1.6e-30 136.3 99 71.7
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 1.6e-30 136.3 105 64.8
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 2.1e-30 136.0 102 66.7
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 2.1e-30 136.0 100 71.0
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 2.1e-30 136.0 100 68.0
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 2.7e-30 135.6 99 71.7
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 2.7e-30 135.6 100 67.0
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 2.7e-30 135.6 104 69.2
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 2.7e-30 135.6 100 69.0
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 3.5e-30 135.2 105 65.7
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 3.5e-30 135.2 105 65.7
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 4.6e-30 134.8 100 68.0
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 6.0e-30 134.4 102 68.6
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 7.9e-30 134.0 100 68.0
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.0e-29 133.7 105 64.8
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.0e-29 133.7 100 66.0
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 2.3e-29 132.5 100 67.0
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.3e-29 132.5 100 67.0
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.3e-29 132.5 100 67.0
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 2.3e-29 132.5 103 68.9
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 2.3e-29 132.5 103 68.9
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.0e-29 132.1 100 66.0
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.0e-29 132.1 100 66.0
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 3.0e-29 132.1 100 64.0
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 3.9e-29 131.7 106 65.1
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.9e-29 131.7 100 67.0
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 3.9e-29 131.7 100 67.0
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 5.1e-29 131.3 100 65.0
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.1e-28 130.2 100 65.0
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 1.5e-28 129.8 100 65.0
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 1.5e-28 129.8 100 65.0
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.5e-28 129.8 100 69.0
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.9e-28 129.4 100 67.0
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 2.5e-28 129.0 100 67.0
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 2.5e-28 129.0 105 63.8
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 3.3e-28 128.6 104 61.5
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 4.3e-28 128.3 101 66.3
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 4.3e-28 128.3 101 66.3
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 4.3e-28 128.3 102 64.7
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 4.3e-28 128.3 100 65.0
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 5.6e-28 127.9 104 60.6
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.6e-28 127.9 104 60.6
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 5.6e-28 127.9 104 60.6
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 5.6e-28 127.9 100 65.0
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 7.4e-28 127.5 92 70.7
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 9.6e-28 127.1 104 60.6
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 2.8e-27 125.6 115 60.0
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.7e-27 125.2 104 59.6
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.7e-27 125.2 100 67.0
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 6.2e-27 124.4 104 65.4
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.8e-26 122.9 105 60.0
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 3.1e-26 122.1 100 62.0
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 4.0e-26 121.7 100 62.0
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 4.0e-26 121.7 100 64.0
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 5.3e-26 121.3 98 61.2
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 5.3e-26 121.3 98 60.2
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 5.3e-26 121.3 98 61.2
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 6.9e-26 120.9 100 59.0
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 6.9e-26 120.9 103 63.1
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 9.0e-26 120.6 113 54.9
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 9.0e-26 120.6 101 64.4
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 1.2e-25 120.2 101 61.4
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 2.0e-25 119.4 98 62.2
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 2.6e-25 119.0 100 58.0
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 2.6e-25 119.0 100 58.0
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 6.5e-24 114.4 98 57.1
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 1.9e-23 112.8 100 60.0
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 2.5e-23 112.5 150 50.0
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.6e-22 108.2 77 70.1
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 6.0e-22 107.8 103 49.5
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 6.0e-22 107.8 103 49.5
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.3e-21 105.9 139 45.3
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 1.5e-20 103.2 122 48.4
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 2.5e-20 102.4 127 48.0
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.3e-20 102.1 77 64.9
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 7.4e-20 100.9 100 48.0
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 3.7e-19 98.6 70 68.6
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 3.7e-19 98.6 94 47.9
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 1.8e-18 96.3 73 68.5
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 6.9e-18 94.4 68 66.2
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.8e-16 88.6 102 51.0
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 3.8e-16 88.6 101 50.5
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 8.5e-16 87.4 65 69.2
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 1.1e-15 87.0 91 44.0
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.9e-15 86.3 100 51.0
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 2.5e-15 85.9 139 46.8
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.0e-13 80.5 61 62.3
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 6.7e-13 77.8 96 52.1
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 6.3e-11 71.2 79 46.8
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 5.0e-08 61.6 102 42.2


User provided reference genes

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