Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 0.0e+00 2345.5 1220 100.0
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 0.0e+00 1360.1 1298 60.4
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 0.0e+00 1328.9 1372 56.9
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 0.0e+00 1306.6 1286 58.5
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 0.0e+00 1242.3 1368 53.9
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1104.7 1242 51.8
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 0.0e+00 1083.2 1241 51.2
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1083.2 1298 50.5
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 1.9e-306 1056.2 1099 54.9
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 4.8e-302 1041.6 1264 49.8
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 8.3e-302 1040.8 1206 51.1
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 2.7e-300 1035.8 1309 48.4
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 2.3e-299 1032.7 1279 50.0
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 5.0e-299 1031.6 1241 50.2
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 1.9e-298 1029.6 1273 49.3
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.5e-295 1020.0 1097 53.4
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 2.6e-295 1019.2 1278 48.6
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 7.5e-295 1017.7 1304 48.3
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 3.1e-293 1012.3 1290 48.6
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 5.4e-293 1011.5 1250 48.8
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.2e-292 1010.4 1285 48.7
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 2.7e-292 1009.2 1304 47.8
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 7.8e-292 1007.7 1320 47.3
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 1.7e-291 1006.5 1281 47.5
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 1.7e-291 1006.5 1342 47.2
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 3.8e-291 1005.4 1258 48.6
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 7.3e-290 1001.1 1141 52.1
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 1.2e-289 1000.3 1082 53.3
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 3.0e-288 995.7 1241 48.8
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 2.0e-287 993.0 1084 53.1
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 7.5e-287 991.1 1110 51.2
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 4.9e-286 988.4 1259 48.5
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 3.2e-285 985.7 1109 51.2
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 9.2e-285 984.2 1104 50.8
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 9.2e-285 984.2 1268 48.7
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 1.6e-284 983.4 1092 52.5
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 2.0e-284 983.0 1216 49.5
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 2.0e-284 983.0 1097 51.8
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 3.9e-283 978.8 1237 47.9
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 8.6e-283 977.6 1262 47.7
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 1.1e-282 977.2 1280 47.8
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 2.3e-280 969.5 1284 46.7
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 6.8e-280 968.0 1283 47.8
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.2e-279 967.2 923 56.9
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 1.3e-278 963.8 1093 52.1
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 1.7e-278 963.4 1210 48.3
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 6.4e-278 961.4 1317 46.7
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 1.1e-277 960.7 1105 51.7
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 1.9e-277 959.9 1062 51.9
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 5.4e-277 958.4 1233 48.1
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 1.2e-276 957.2 1014 53.3
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 4.6e-276 955.3 989 54.1
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 2.5e-274 949.5 1279 46.5
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 3.3e-274 949.1 1295 47.8
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 7.3e-274 948.0 1228 48.0
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 9.5e-274 947.6 1101 49.5
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 8.1e-273 944.5 1216 47.0
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 6.8e-272 941.4 1282 47.1
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.0e-271 939.9 1299 47.4
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 2.0e-271 939.9 1277 45.1
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.5e-271 937.9 1294 47.1
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 1.7e-270 936.8 1095 50.0
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 2.9e-270 936.0 1204 47.3
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 3.5e-268 929.1 1210 46.7
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 1.0e-267 927.5 1331 45.1
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 1.5e-266 923.7 1206 46.8
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 1.1e-264 917.5 1315 44.3
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 8.9e-264 914.4 1255 46.5
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 2.0e-263 913.3 1219 45.9
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 9.9e-263 911.0 1242 46.5
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 2.9e-262 909.4 1228 45.9
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 2.4e-261 906.4 1204 46.2
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 7.1e-261 904.8 1094 49.9
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 2.1e-260 903.3 1234 46.8
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 6.2e-257 891.7 1214 46.2
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.1e-257 891.3 1085 50.5
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 2.4e-256 889.8 957 53.9
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 4.0e-256 889.0 1210 46.1
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 1.3e-254 884.0 1217 45.9
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 1.4e-253 880.6 1221 45.8
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 1.4e-253 880.6 1221 45.8
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 1.4e-253 880.6 1221 45.8
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 4.0e-248 862.4 1210 45.9
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 4.5e-247 859.0 1248 44.3
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 1.4e-245 854.0 1152 47.6
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 3.5e-244 849.4 1168 47.1
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.1e-240 836.3 1220 45.7
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 4.5e-239 832.4 1114 47.6
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 9.9e-239 831.2 913 51.9
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 2.8e-233 813.1 1135 46.5
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 6.9e-232 808.5 1006 47.1
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.7e-228 796.6 1132 43.3
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 3.9e-227 792.7 1234 42.0
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 6.3e-225 785.4 1035 46.5
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 2.4e-224 783.5 1098 43.9
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.1e-221 774.6 1006 47.5
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 6.1e-220 768.8 1241 42.1
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 3.0e-219 766.5 1187 43.6
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 5.0e-214 749.2 1106 43.6
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 9.4e-205 718.4 550 66.2
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 6.7e-203 712.2 1138 40.6
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 9.1e-192 675.2 938 45.6
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 4.2e-189 666.4 522 65.1
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.8e-187 661.0 1216 38.6
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 4.4e-186 656.4 511 64.8
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 6.6e-166 589.3 1022 38.4
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 1.4e-160 571.6 1056 35.8
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 5.2e-147 526.6 1190 32.8
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 7.1e-136 489.6 677 44.3
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 3.3e-101 374.4 979 29.1
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 3.3e-93 347.8 678 38.8
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.6e-79 302.4 244 63.5
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 1.4e-54 219.5 290 47.2
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 3.7e-52 211.5 174 64.9
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 6.4e-52 210.7 271 44.6
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.4e-46 193.0 159 62.3
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 7.8e-42 177.2 138 65.9
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 4.3e-40 171.4 607 27.5
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.5e-29 136.3 104 60.6
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.2e-27 128.3 97 62.9
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 1.3e-25 123.2 235 34.0
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.1e-24 120.2 114 57.0
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 5.6e-24 117.9 107 54.2
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 5.6e-24 117.9 121 51.2
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 2.6e-21 109.0 79 58.2
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.4e-19 103.2 120 50.0
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 9.3e-19 100.5 125 48.8
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 8.1e-15 87.4 132 40.9
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.5e-13 83.2 79 54.4
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 8.4e-12 77.4 86 50.0
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 1.9e-11 76.3 116 39.7
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 2.5e-08 65.9 64 50.0
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 3.3e-08 65.5 72 47.2
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 4.3e-08 65.1 39 79.5
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 4.3e-08 65.1 121 33.1
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 5.6e-08 64.7 84 38.1
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 8.1e-07 60.8 44 63.6
FvH4_7g30961 Fragaria vesca HOM05D005400 ORTHO05D011897 5.3e-06 58.2 63 44.4


User provided reference genes

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