Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16740 Striga asiatica HOM05D002727 ORTHO05D002856 6.6e-117 424.1 219 100.0
SGA_v2.0_scaffold76G25158 Striga asiatica HOM05D002727 ORTHO05D002856 7.9e-62 241.1 161 78.9
SGA_v2.0_scaffold180G39653 Striga asiatica HOM05D000089 ORTHO05D000104 1.8e-34 150.2 105 81.0
SGA_v2.0_scaffold170G38831 Striga asiatica HOM05D002727 ORTHO05D002856 2.4e-34 149.8 102 80.4
SGA_v2.0_scaffold52G19078 Striga asiatica HOM05D002727 ORTHO05D002856 1.2e-33 147.5 107 81.3
SGA_v2.0_scaffold495G52461 Striga asiatica HOM05D002727 ORTHO05D002856 7.2e-31 138.3 91 83.5
Migut.E00413 Erythranthe guttata HOM05D002727 ORTHO05D002856 2.6e-28 129.8 95 72.6
SGA_v2.0_scaffold122G33196 Striga asiatica HOM05D002727 ORTHO05D002856 7.5e-28 128.3 73 90.4
SGA_v2.0_scaffold668G53415 Striga asiatica HOM05D002727 ORTHO05D002856 1.6e-25 120.6 77 83.1
SGA_v2.0_scaffold192G40538 Striga asiatica HOM05D001081 ORTHO05D004708 8.5e-24 114.8 63 93.7
Oeu044348.1 Olea europaea HOM05D002727 ORTHO05D002856 9.4e-23 111.3 91 68.1
Solyc05g008320.1 Solanum lycopersicum HOM05D002727 ORTHO05D002856 1.0e-21 107.8 96 61.5
Sopen05g004150 Solanum pennellii HOM05D002727 ORTHO05D002856 1.0e-21 107.8 96 61.5
PGSC0003DMG400030506 Solanum tuberosum HOM05D002727 ORTHO05D002856 1.0e-21 107.8 96 61.5
SGA_v2.0_scaffold190G40405 Striga asiatica HOM05D002727 ORTHO05D002856 5.2e-21 105.5 62 87.1
unitig_27.g25263 Utricularia gibba HOM05D002727 ORTHO05D002856 5.7e-20 102.1 112 54.5
Nitab4.5_0006134g0020 Nicotiana tabacum HOM05D002727 ORTHO05D002856 9.8e-20 101.3 110 56.4
CAN.G185.21 Capsicum annuum HOM05D002727 ORTHO05D002856 1.4e-18 97.4 96 56.2
Peaxi162Scf00205g00023 Petunia axillaris HOM05D002727 ORTHO05D002856 7.0e-18 95.1 109 52.3
SGA_v2.0_scaffold10G05490 Striga asiatica HOM05D002727 ORTHO05D002856 2.0e-17 93.6 63 79.4
SGA_v2.0_scaffold172G38950 Striga asiatica HOM05D002727 ORTHO05D002856 2.0e-17 93.6 55 87.3
Atru.chr11.374 Acer truncatum HOM05D002727 ORTHO05D002856 1.5e-15 87.4 127 44.1
Lsat_1_v5_gn_8_43200 Lactuca sativa HOM05D002727 ORTHO05D002856 2.5e-15 86.7 113 45.1
unitig_26.g9074 Utricularia gibba HOM05D002727 ORTHO05D002856 4.2e-15 85.9 105 50.5
SGA_v2.0_scaffold495G52460 Striga asiatica HOM05D000788 ORTHO05D016013 2.8e-14 83.2 94 51.1
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 3.6e-14 82.8 123 43.1
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 8.0e-14 81.6 88 50.0
HanXRQChr08g0212641 Helianthus annuus HOM05D002727 ORTHO05D002856 1.0e-13 81.3 113 43.4
unitig_26.g9076 Utricularia gibba HOM05D002727 ORTHO05D002856 8.8e-13 78.2 105 47.6
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 2.0e-12 77.0 133 41.4
Dinv16190 Davidia involucrata HOM05D002727 ORTHO05D002856 2.0e-12 77.0 92 45.7
SGA_v2.0_scaffold85G26696 Striga asiatica HOM05D002727 ORTHO05D002856 2.0e-12 77.0 70 71.4
vmacro10627 Vaccinium macrocarpon HOM05D002727 ORTHO05D002856 2.0e-12 77.0 125 40.0
Ciclev10017720m.g Citrus clementina HOM05D002727 ORTHO05D002856 4.4e-12 75.9 131 38.2
Hma1.2p1_0951F.1_g240760 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 4.4e-12 75.9 101 46.5
Hma1.2p1_2764F.1_g328145 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 4.4e-12 75.9 101 46.5
PSO478G1911 Papaver somniferum HOM05D002727 ORTHO05D002856 4.4e-12 75.9 110 43.6
Sabra08G0096800 Salix brachista HOM05D002727 ORTHO05D002856 4.4e-12 75.9 113 42.5
QL01p002288 Quercus lobata HOM05D002727 ORTHO05D002856 5.7e-12 75.5 119 40.3
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 9.8e-12 74.7 114 42.1
MELO3C012299.2 Cucumis melo HOM05D002727 ORTHO05D002856 1.7e-11 73.9 92 44.6
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 1.7e-11 73.9 128 37.5
Actinidia36683 Actinidia chinensis HOM05D002727 ORTHO05D002856 2.2e-11 73.6 98 45.9
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 2.2e-11 73.6 100 47.0
Actinidia15249 Actinidia chinensis HOM05D002727 ORTHO05D002856 2.8e-11 73.2 98 44.9
HanXRQChr15g0488631 Helianthus annuus HOM05D002727 ORTHO05D002856 2.8e-11 73.2 113 43.4
Thecc.02G279300 Theobroma cacao HOM05D002727 ORTHO05D002856 2.8e-11 73.2 113 43.4
ECA232G4731 Erigeron canadensis HOM05D002727 ORTHO05D002856 3.7e-11 72.8 88 45.5
PSO017G6820 Papaver somniferum HOM05D002727 ORTHO05D002856 3.7e-11 72.8 110 41.8
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 4.9e-11 72.4 90 43.3
PSO478G1097 Papaver somniferum HOM05D002727 ORTHO05D002856 4.9e-11 72.4 110 41.8
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 8.3e-11 71.6 93 43.0
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 8.3e-11 71.6 102 42.2
Potri.008G128200 Populus trichocarpa HOM05D002727 ORTHO05D002856 1.1e-10 71.2 113 38.9
CsaV3_5G034890 Cucumis sativus L. HOM05D002727 ORTHO05D002856 1.4e-10 70.9 113 38.9
PGR102G0802 Punica granatum HOM05D002727 ORTHO05D002856 1.4e-10 70.9 93 44.1
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 1.8e-10 70.5 116 36.2
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 1.8e-10 70.5 89 47.2
ClCG05G022230 Citrullus lanatus HOM05D002727 ORTHO05D002856 2.4e-10 70.1 92 43.5
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 2.4e-10 70.1 115 41.7
ECA233G4969 Erigeron canadensis HOM05D002727 ORTHO05D002856 2.4e-10 70.1 88 45.5
FAN07G1376 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.4e-10 70.1 130 37.7
CARHR213470 Cardamine hirsuta HOM05D002727 ORTHO05D002856 3.1e-10 69.7 90 45.6
FvH4_4g32150 Fragaria vesca HOM05D002727 ORTHO05D002856 3.1e-10 69.7 130 37.7
FAN22G0940 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.1e-10 69.7 130 37.7
Potri.008G127500 Populus trichocarpa HOM05D002727 ORTHO05D002856 3.1e-10 69.7 134 36.6
VMungo0720G2475 Vigna mungo HOM05D002727 ORTHO05D002856 3.1e-10 69.7 88 43.2
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 4.1e-10 69.3 90 42.2
Thhalv10028170m.g Eutrema salsugineum HOM05D002727 ORTHO05D002856 4.1e-10 69.3 90 45.6
Lalb_Chr21g0308511 Lupinus albus HOM05D002727 ORTHO05D002856 4.1e-10 69.3 97 41.2
MD16G1031100 Malus domestica HOM05D002727 ORTHO05D002856 4.1e-10 69.3 110 44.5
Prupe.1G322000 Prunus persica HOM05D002727 ORTHO05D002856 4.1e-10 69.3 104 44.2
FAN12G1004 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.4e-10 68.9 130 36.9
Lj5g0017764 Lotus japonicus HOM05D002727 ORTHO05D002856 5.4e-10 68.9 88 44.3
Sc18g0004340 Simmondsia chinensis HOM05D002727 ORTHO05D002856 7.0e-10 68.6 141 39.0
Atru.chr11.406 Acer truncatum HOM05D002727 ORTHO05D002856 1.2e-09 67.8 140 35.0
Sabra08G0096300 Salix brachista HOM05D002727 ORTHO05D002856 1.2e-09 67.8 100 44.0
Haze_11036 Corylus avellana HOM05D002727 ORTHO05D002856 1.6e-09 67.4 89 43.8
FAN06G1995 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.6e-09 67.4 98 40.8
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.6e-09 67.4 98 40.8
A04p14000 Brassica napus HOM05D002727 ORTHO05D002856 2.0e-09 67.0 91 42.9
C04p48030 Brassica napus HOM05D002727 ORTHO05D002856 2.0e-09 67.0 91 42.9
BolC4t26395H Brassica oleracea HOM05D002727 ORTHO05D002856 2.0e-09 67.0 91 42.9
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 2.0e-09 67.0 106 38.7
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 2.7e-09 66.6 90 41.1
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 2.7e-09 66.6 156 32.7
Lsat_1_v5_gn_3_54560 Lactuca sativa HOM05D002727 ORTHO05D002856 2.7e-09 66.6 109 38.5
Sp7g01010 Schrenkiella parvula HOM05D002727 ORTHO05D002856 2.7e-09 66.6 90 44.4
TPR.G4843 Trifolium pratense HOM05D002727 ORTHO05D002856 2.7e-09 66.6 125 36.0
VMungo0720G0381 Vigna mungo HOM05D002727 ORTHO05D002856 2.7e-09 66.6 88 43.2
BraA04t17062Z Brassica rapa HOM05D002727 ORTHO05D002856 3.5e-09 66.2 91 41.8
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 3.5e-09 66.2 118 38.1
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.5e-09 66.2 107 43.0
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.5e-09 66.2 107 41.1
MD13G1028200 Malus domestica HOM05D002727 ORTHO05D002856 4.5e-09 65.9 104 46.2
BcaB06g27576 Brassica carinata HOM05D002727 ORTHO05D002856 5.9e-09 65.5 91 40.7
BcaC02g08989 Brassica carinata HOM05D002727 ORTHO05D002856 5.9e-09 65.5 91 41.8
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.9e-09 65.5 107 40.2
Medtr4g084160 Medicago truncatula HOM05D002727 ORTHO05D002856 5.9e-09 65.5 88 43.2
Cfa008577 Carpinus fangiana HOM05D002727 ORTHO05D002856 7.8e-09 65.1 109 39.4
RcHm_v2.0_Chr4g0440841 Rosa chinensis HOM05D002727 ORTHO05D002856 7.8e-09 65.1 103 42.7
AL7G48630 Arabidopsis lyrata HOM05D002727 ORTHO05D002856 1.3e-08 64.3 87 43.7
Ca_11101_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 1.3e-08 64.3 109 39.4
CDE04G0093 Ceratophyllum demersum HOM05D002727 ORTHO05D002856 1.7e-08 63.9 109 40.4
Eucgr.G02206 Eucalyptus grandis HOM05D002727 ORTHO05D002856 1.7e-08 63.9 114 35.1
FvH4_7g12190 Fragaria vesca HOM05D002727 ORTHO05D002856 1.7e-08 63.9 108 38.9
PSO017G4651 Papaver somniferum HOM05D002727 ORTHO05D002856 1.7e-08 63.9 156 33.3
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 1.7e-08 63.9 142 33.1
CiPaw.05G247600 Carya illinoinensis HOM05D002727 ORTHO05D002856 2.3e-08 63.5 94 43.6
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 2.3e-08 63.5 138 36.2
AT5G40940 Arabidopsis thaliana HOM05D002727 ORTHO05D002856 2.9e-08 63.2 90 41.1
Eucgr.G02210 Eucalyptus grandis HOM05D002727 ORTHO05D002856 2.9e-08 63.2 114 36.0
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.8e-08 62.8 118 37.3
THA.LOC104824147 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 3.8e-08 62.8 97 39.2
CANSAT64G1895 Cannabis sativa HOM05D002727 ORTHO05D002856 5.0e-08 62.4 114 37.7
THA.LOC104824571 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 5.0e-08 62.4 100 42.0
Ah.02g128090 Amaranthus hybridus HOM05D002727 ORTHO05D002856 6.6e-08 62.0 101 43.6
arahy.Tifrunner.gnm1.ann1.AV0RHQ Arachis hypogaea HOM05D002727 ORTHO05D002856 6.6e-08 62.0 99 36.4
Cpa.g.sc65.122 Carica papaya HOM05D002727 ORTHO05D002856 1.1e-07 61.2 144 34.0
Glyma.20G124900 Glycine max HOM05D002727 ORTHO05D002856 1.1e-07 61.2 109 37.6
Sed0008746 Sechium edule HOM05D002727 ORTHO05D002856 1.1e-07 61.2 138 34.8
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.5e-07 60.8 107 38.3
arahy.Tifrunner.gnm1.ann1.PT8N4B Arachis hypogaea HOM05D002727 ORTHO05D002856 1.5e-07 60.8 99 36.4
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.5e-07 60.8 98 36.7
Eucgr.G02208 Eucalyptus grandis HOM05D002727 ORTHO05D002856 1.9e-07 60.5 114 35.1
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 2.5e-07 60.1 91 39.6
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 2.5e-07 60.1 98 39.8
QL01p002083 Quercus lobata HOM05D002727 ORTHO05D002856 2.5e-07 60.1 90 37.8
Glyma.09G119800 Glycine max HOM05D002727 ORTHO05D002856 4.3e-07 59.3 79 46.8
EL10Ac6g14255 Beta vulgaris HOM05D002727 ORTHO05D002856 5.6e-07 58.9 108 40.7
Psat6g221920 Pisum sativum HOM05D002727 ORTHO05D002856 5.6e-07 58.9 126 35.7
arahy.Tifrunner.gnm1.ann1.L56H08 Arachis hypogaea HOM05D002727 ORTHO05D002856 7.3e-07 58.5 87 41.4
Ca_24293_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 7.3e-07 58.5 112 37.5
AUR62039553 Chenopodium quinoa HOM05D002727 ORTHO05D002856 9.5e-07 58.2 109 37.6
Ca_24568_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 9.5e-07 58.2 93 36.6
MD09G1010600 Malus domestica HOM05D002727 ORTHO05D002856 9.5e-07 58.2 114 38.6
Aa31LG1G13580 Aethionema arabicum HOM05D002727 ORTHO05D002856 1.2e-06 57.8 98 39.8
Carub.0007s3456 Capsella rubella HOM05D002727 ORTHO05D002856 1.6e-06 57.4 92 40.2
Lj2g0009169 Lotus japonicus HOM05D002727 ORTHO05D002856 2.1e-06 57.0 94 38.3
Lalb_Chr17g0338701 Lupinus albus HOM05D002727 ORTHO05D002856 2.1e-06 57.0 105 36.2
Atru.chr6.2573 Acer truncatum HOM05D002727 ORTHO05D002856 3.6e-06 56.2 108 38.0
Manes.14G135600 Manihot esculenta HOM05D002727 ORTHO05D002856 3.6e-06 56.2 114 37.7
Prupe.3G306500 Prunus persica HOM05D002727 ORTHO05D002856 3.6e-06 56.2 125 36.0
FvH4_5g09402 Fragaria vesca HOM05D002727 ORTHO05D002856 4.7e-06 55.8 97 40.2
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 8.0e-06 55.1 97 37.1
Medtr5g044170 Medicago truncatula HOM05D002727 ORTHO05D002856 8.0e-06 55.1 106 36.8


User provided reference genes

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