Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16701 Striga asiatica HOM05D007537 ORTHO05D009602 2.8e-200 701.8 369 100.0
MSTRG.27338 Avicennia marina HOM05D007537 ORTHO05D009602 1.8e-90 337.0 394 56.6
vmacro10037 Vaccinium macrocarpon HOM05D007537 ORTHO05D009602 2.0e-81 307.0 392 48.5
CSS0034530 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 1.8e-79 300.4 392 46.4
Solyc06g051360.3 Solanum lycopersicum HOM05D007537 ORTHO05D009602 1.8e-79 300.4 400 46.8
Nitab4.5_0008231g0020 Nicotiana tabacum HOM05D007537 ORTHO05D009602 5.4e-79 298.9 394 44.9
Nitab4.5_0000797g0160 Nicotiana tabacum HOM05D007537 ORTHO05D009602 7.0e-79 298.5 394 47.2
COL.COLO4_25746 Corchorus olitorius HOM05D007537 ORTHO05D009602 9.2e-79 298.1 391 47.3
Sopen06g017350 Solanum pennellii HOM05D007537 ORTHO05D009602 9.2e-79 298.1 400 47.2
Actinidia13942 Actinidia chinensis HOM05D007537 ORTHO05D009602 2.0e-78 297.0 391 49.1
CSS0047961 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 5.0e-77 292.4 393 46.3
Duzib114G0965 Durio zibethinus HOM05D007537 ORTHO05D009602 6.6e-77 292.0 390 47.4
Migut.F00693 Erythranthe guttata HOM05D007537 ORTHO05D009602 6.6e-77 292.0 299 55.5
Rhsim09G0177700 Rhododendron simsii HOM05D007537 ORTHO05D009602 3.3e-76 289.7 395 47.1
Thecc.10G014900 Theobroma cacao HOM05D007537 ORTHO05D009602 9.5e-76 288.1 390 45.4
CSS0001440 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 2.1e-75 287.0 393 46.1
Cc02_g06360 Coffea canephora HOM05D007537 ORTHO05D009602 2.8e-75 286.6 394 47.2
TAR633G2636 Trochodendron aralioides HOM05D007537 ORTHO05D009602 1.0e-74 284.6 387 47.5
Cfa001307 Carpinus fangiana HOM05D007537 ORTHO05D009602 2.3e-74 283.5 388 47.7
Peaxi162Scf00284g01051 Petunia axillaris HOM05D007537 ORTHO05D009602 4.0e-74 282.7 401 45.4
PGSC0003DMG400024236 Solanum tuberosum HOM05D007537 ORTHO05D009602 5.2e-74 282.3 405 46.7
ClCG07G004310 Citrullus lanatus HOM05D007537 ORTHO05D009602 3.4e-73 279.6 384 46.6
Manes.07G130900 Manihot esculenta HOM05D007537 ORTHO05D009602 4.4e-73 279.3 393 47.6
Sabra08G0051400 Salix brachista HOM05D007537 ORTHO05D009602 1.9e-71 273.9 376 46.0
DCAR_011821 Daucus carota HOM05D007537 ORTHO05D009602 1.2e-70 271.2 341 48.7
FAN06G1236 Fragaria x ananassa HOM05D007537 ORTHO05D009602 2.7e-70 270.0 402 42.8
arahy.Tifrunner.gnm1.ann1.EU49LP Arachis hypogaea HOM05D007537 ORTHO05D009602 3.5e-70 269.6 394 46.4
Glyma.02G257900 Glycine max HOM05D007537 ORTHO05D009602 6.0e-70 268.9 347 47.3
LjContig00357g0012610 Lotus japonicus HOM05D007537 ORTHO05D009602 7.8e-70 268.5 350 47.4
Nn2g10869 Nelumbo nucifera HOM05D007537 ORTHO05D009602 1.3e-69 267.7 413 42.9
Potri.008G069800 Populus trichocarpa HOM05D007537 ORTHO05D009602 1.7e-69 267.3 394 45.4
FAN01G2979 Fragaria x ananassa HOM05D007537 ORTHO05D009602 6.6e-69 265.4 400 42.8
PSO384G1417 Papaver somniferum HOM05D007537 ORTHO05D009602 1.1e-68 264.6 435 41.8
FAN10G0956 Fragaria x ananassa HOM05D007537 ORTHO05D009602 3.3e-68 263.1 401 42.1
Aqoxy2G00863 Aquilegia oxysepala HOM05D007537 ORTHO05D009602 4.3e-68 262.7 384 44.0
FvH4_7g24610 Fragaria vesca HOM05D007537 ORTHO05D009602 4.3e-68 262.7 410 41.7
FAN03G1922 Fragaria x ananassa HOM05D007537 ORTHO05D009602 4.3e-68 262.7 397 42.1
arahy.Tifrunner.gnm1.ann1.QLS93X Arachis hypogaea HOM05D007537 ORTHO05D009602 2.8e-67 260.0 404 45.0
Sed0013636 Sechium edule HOM05D007537 ORTHO05D009602 3.6e-67 259.6 383 44.4
Medtr5g082850 Medicago truncatula HOM05D007537 ORTHO05D009602 5.2e-66 255.8 346 44.2
Psat2g031640 Pisum sativum HOM05D007537 ORTHO05D009602 6.8e-66 255.4 336 46.1
CiPaw.01G299800 Carya illinoinensis HOM05D007537 ORTHO05D009602 4.4e-65 252.7 397 42.1
Prupe.2G251400 Prunus persica HOM05D007537 ORTHO05D009602 4.4e-65 252.7 406 43.3
Haze_17238 Corylus avellana HOM05D007537 ORTHO05D009602 9.8e-65 251.5 385 44.4
Hund13875 Selenicereus undatus HOM05D007537 ORTHO05D009602 9.8e-65 251.5 410 42.0
PGR044G1397 Punica granatum HOM05D007537 ORTHO05D009602 1.3e-64 251.1 408 43.9
RcHm_v2.0_Chr1g0370441 Rosa chinensis HOM05D007537 ORTHO05D009602 1.3e-64 251.1 404 41.6
Lsat_1_v5_gn_8_12620 Lactuca sativa HOM05D007537 ORTHO05D009602 2.9e-64 250.0 298 47.3
Gohir.D13G016000 Gossypium hirsutum HOM05D007537 ORTHO05D009602 1.9e-63 247.3 392 43.1
BolC1t05333H Brassica oleracea HOM05D007537 ORTHO05D009602 4.1e-63 246.1 393 41.7
Sp3g09450 Schrenkiella parvula HOM05D007537 ORTHO05D009602 1.2e-62 244.6 397 41.1
BcaB04g21148 Brassica carinata HOM05D007537 ORTHO05D009602 4.6e-62 242.7 391 41.7
BcaC09g48157 Brassica carinata HOM05D007537 ORTHO05D009602 6.0e-62 242.3 391 41.2
Ca_05971_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 1.3e-61 241.1 367 43.3
Ca_05972_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 1.3e-61 241.1 367 43.3
VMungo0647G0018 Vigna mungo HOM05D007537 ORTHO05D009602 1.7e-61 240.7 328 46.6
CARHR085730 Cardamine hirsuta HOM05D007537 ORTHO05D009602 3.0e-61 240.0 388 41.0
Thhalv10020993m.g Eutrema salsugineum HOM05D007537 ORTHO05D009602 6.6e-61 238.8 385 42.3
Gorai.013G017500 Gossypium raimondii HOM05D007537 ORTHO05D009602 1.1e-60 238.0 335 45.1
GSVIVG01032801001 Vitis vinifera HOM05D007537 ORTHO05D009602 1.1e-60 238.0 354 45.8
Lalb_Chr04g0250531 Lupinus albus HOM05D007537 ORTHO05D009602 3.3e-60 236.5 390 41.3
THA.LOC104823184 Tarenaya hassleriana HOM05D007537 ORTHO05D009602 9.5e-60 235.0 349 44.1
Phvul.008G223100 Phaseolus vulgaris HOM05D007537 ORTHO05D009602 1.2e-59 234.6 340 43.5
AUR62022900 Chenopodium quinoa HOM05D007537 ORTHO05D009602 1.6e-59 234.2 388 42.0
ECA233G1171 Erigeron canadensis HOM05D007537 ORTHO05D009602 2.8e-59 233.4 388 41.0
Aa31LG3G4310 Aethionema arabicum HOM05D007537 ORTHO05D009602 1.3e-56 224.6 385 39.2
Carub.0003s1045 Capsella rubella HOM05D007537 ORTHO05D009602 1.3e-56 224.6 400 39.5
Ciclev10031789m.g Citrus clementina HOM05D007537 ORTHO05D009602 1.3e-56 224.6 360 41.9
AL3G22670 Arabidopsis lyrata HOM05D007537 ORTHO05D009602 2.2e-56 223.8 397 39.0
TPR.G38413 Trifolium pratense HOM05D007537 ORTHO05D009602 2.9e-56 223.4 319 42.3
Ah.10g036610 Amaranthus hybridus HOM05D007537 ORTHO05D009602 3.7e-56 223.0 403 37.7
HanXRQChr08g0221761 Helianthus annuus HOM05D007537 ORTHO05D009602 1.1e-55 221.5 308 43.5
AT3G11150 Arabidopsis thaliana HOM05D007537 ORTHO05D009602 7.1e-55 218.8 395 38.2
MBI03_g40958_MAGBIO Magnolia biondii HOM05D007537 ORTHO05D009602 1.2e-54 218.0 334 42.2
BraA01t04198Z Brassica rapa HOM05D007537 ORTHO05D009602 2.7e-54 216.9 391 38.4
AUR62012265 Chenopodium quinoa HOM05D007537 ORTHO05D009602 1.7e-53 214.2 434 40.1
Dinv21742 Davidia involucrata HOM05D007537 ORTHO05D009602 5.1e-53 212.6 195 56.4
Gohir.A13G014800 Gossypium hirsutum HOM05D007537 ORTHO05D009602 5.1e-53 212.6 302 46.7
Eucgr.J00197 Eucalyptus grandis HOM05D007537 ORTHO05D009602 4.9e-48 196.1 301 40.5
CsaV3_5G010250 Cucumis sativus L. HOM05D007537 ORTHO05D009602 5.4e-47 192.6 286 44.8
EL10Ac2g04847 Beta vulgaris HOM05D007537 ORTHO05D009602 7.8e-46 188.7 397 38.8
MELO3C026792.2 Cucumis melo HOM05D007537 ORTHO05D009602 1.0e-45 188.3 270 44.4
Sc10g0002440 Simmondsia chinensis HOM05D007537 ORTHO05D009602 6.6e-45 185.7 395 39.5
BcaB04g21146 Brassica carinata HOM05D007537 ORTHO05D009602 3.0e-37 160.2 291 40.9
Atru.chr12.52 Acer truncatum HOM05D007537 ORTHO05D009602 7.3e-36 155.6 321 35.8
HPP92_007582 Vanilla planifolia HOM05D007537 ORTHO05D009602 1.0e-29 135.2 383 33.7
Oeu004692.1 Olea europaea HOM05D007537 ORTHO05D009602 7.4e-28 129.0 229 43.2
MD01G1154400 Malus domestica HOM05D007537 ORTHO05D009602 9.6e-28 128.6 133 49.6
CSS0044280 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 1.4e-26 124.8 119 54.6
Os01g0830500 Oryza sativa ssp. japonica HOM05D007537 ORTHO05D009602 2.0e-25 120.9 352 33.2
ATR0681G199 Amborella trichopoda HOM05D007537 ORTHO05D009602 2.1e-22 110.9 345 32.2
SEGI_28444 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 1.8e-21 107.8 392 28.6
SEGI_29994 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 1.8e-21 107.8 392 28.6
Glyma.14G058602 Glycine max HOM05D007537 ORTHO05D009602 5.3e-18 96.3 206 36.9
Oeu004690.1 Olea europaea HOM05D007537 ORTHO05D009602 6.9e-18 95.9 104 53.8
SEGI_01266 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 1.2e-14 85.1 389 26.2
SEGI_41305 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 2.4e-10 70.9 384 23.4
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 4.5e-09 66.6 83 37.3
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 1.7e-08 64.7 83 37.3
PGSC0003DMG400002528 Solanum tuberosum HOM05D006831 ORTHO05D008256 1.7e-08 64.7 83 37.3
SMO172G0001 Selaginella moellendorffii HOM05D000018 ORTHO05D001172 2.2e-08 64.3 215 25.6
Zm00001eb120250 Zea mays HOM05D000858 ORTHO05D001578 2.2e-08 64.3 261 27.2
Os01g0209700 Oryza sativa ssp. japonica HOM05D000858 ORTHO05D001578 6.5e-08 62.8 265 27.9
Zm00001eb149010 Zea mays HOM05D007537 ORTHO05D009602 8.5e-08 62.4 264 30.7
Cpa.g.sc1482.2 Carica papaya HOM05D000018 ORTHO05D000187 1.1e-07 62.0 222 26.1
Solyc03g120970.3 Solanum lycopersicum HOM05D006831 ORTHO05D008256 1.4e-07 61.6 83 36.1
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 3.2e-07 60.5 81 34.6
Zm00001eb338340 Zea mays HOM05D000858 ORTHO05D001578 3.2e-07 60.5 268 28.0
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 7.2e-07 59.3 291 24.7
Hma1.2p1_0430F.1_g151466 Hydrangea macrophylla HOM05D006831 ORTHO05D008256 9.4e-07 58.9 278 25.9
Cpa.g.sc1482.1 Carica papaya HOM05D000018 ORTHO05D000187 1.6e-06 58.2 226 26.1
Sabra01G0151300 Salix brachista HOM05D006831 ORTHO05D008256 1.6e-06 58.2 337 24.9
Cfa013162 Carpinus fangiana HOM05D000018 ORTHO05D006428 2.1e-06 57.8 237 25.7
Ciclev10021090m.g Citrus clementina HOM05D000858 ORTHO05D001578 2.1e-06 57.8 234 25.6
DCAR_016191 Daucus carota HOM05D006831 ORTHO05D008256 2.1e-06 57.8 322 25.2
Nn6g35309 Nelumbo nucifera HOM05D006831 ORTHO05D008256 2.1e-06 57.8 281 24.9
SMO172G0177 Selaginella moellendorffii HOM05D000018 ORTHO05D010444 2.1e-06 57.8 221 24.9
DCAR_017567 Daucus carota HOM05D000858 ORTHO05D001578 2.7e-06 57.4 324 24.4
Migut.I00901 Erythranthe guttata HOM05D006831 ORTHO05D008256 2.7e-06 57.4 130 28.5
Sabra11G0033200 Salix brachista HOM05D006831 ORTHO05D008256 3.6e-06 57.0 257 24.5
Atru.chr4.2804 Acer truncatum HOM05D000018 ORTHO05D000187 4.6e-06 56.6 283 25.4
Actinidia35172 Actinidia chinensis HOM05D000206 ORTHO05D002004 4.6e-06 56.6 244 30.3
FvH4_6g13290 Fragaria vesca HOM05D000018 ORTHO05D000187 4.6e-06 56.6 219 24.7
PGR031G3845 Punica granatum HOM05D000018 ORTHO05D000187 6.1e-06 56.2 246 24.0
Rhsim06G0185300 Rhododendron simsii HOM05D000858 ORTHO05D001578 7.9e-06 55.8 304 25.0
Rhsim07G0075100 Rhododendron simsii HOM05D000118 ORTHO05D000098 7.9e-06 55.8 328 22.6


User provided reference genes

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