Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 3.0e-96 355.1 177 100.0
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 3.6e-89 331.6 177 92.1
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 2.3e-72 275.8 177 78.5
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 6.8e-72 274.2 177 74.6
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 8.3e-70 267.3 175 74.9
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 1.9e-69 266.2 178 72.5
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 3.3e-66 255.4 182 67.6
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 5.6e-66 254.6 185 70.8
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 1.6e-65 253.1 182 68.7
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.6e-65 253.1 182 68.1
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 2.1e-65 252.7 182 67.0
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 1.4e-64 250.0 182 70.9
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 3.4e-63 245.4 178 71.3
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.3e-62 243.4 185 68.6
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.9e-62 242.3 185 68.1
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 6.4e-62 241.1 175 69.1
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 1.1e-61 240.4 185 65.4
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.4e-61 240.0 181 69.1
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.9e-61 239.6 187 65.8
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.2e-60 236.9 180 65.0
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 2.1e-60 236.1 164 69.5
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 4.6e-60 235.0 178 66.3
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 6.0e-60 234.6 190 62.6
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 1.7e-59 233.0 180 69.4
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 3.0e-59 232.3 190 62.1
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 3.0e-59 232.3 176 65.9
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 8.6e-59 230.7 144 76.4
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.1e-58 230.3 172 68.0
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 1.5e-58 229.9 177 65.5
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 3.3e-58 228.8 185 64.9
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.3e-58 228.4 151 72.8
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 4.3e-58 228.4 151 72.8
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 4.3e-58 228.4 132 81.8
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 5.6e-58 228.0 178 68.0
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.8e-57 225.7 178 65.7
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 3.6e-57 225.3 184 64.7
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 6.2e-57 224.6 187 64.2
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.4e-56 223.4 186 60.8
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.8e-56 223.0 172 68.0
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 2.3e-56 222.6 222 56.8
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 2.3e-56 222.6 177 63.3
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 3.1e-56 222.2 141 73.0
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 3.1e-56 222.2 180 62.8
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.1e-56 222.2 157 72.0
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.1e-56 222.2 182 62.6
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 8.9e-56 220.7 132 76.5
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.2e-55 220.3 141 72.3
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.2e-55 220.3 150 71.3
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.2e-55 220.3 178 62.9
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.5e-55 219.9 133 75.9
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.5e-55 219.9 193 60.6
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 2.0e-55 219.5 177 65.0
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.4e-55 218.4 179 64.2
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 4.4e-55 218.4 179 64.2
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 4.4e-55 218.4 193 60.1
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 4.4e-55 218.4 181 62.4
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 4.4e-55 218.4 179 65.4
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 5.8e-55 218.0 160 66.9
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 5.8e-55 218.0 179 59.8
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 7.6e-55 217.6 130 76.9
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 9.9e-55 217.2 133 76.7
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.3e-54 216.9 179 63.1
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 1.7e-54 216.5 133 74.4
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 1.7e-54 216.5 153 69.3
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 2.2e-54 216.1 177 63.8
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 2.2e-54 216.1 141 70.9
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 2.2e-54 216.1 141 70.2
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 2.2e-54 216.1 181 61.9
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 2.2e-54 216.1 179 63.7
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.2e-54 216.1 179 63.1
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 2.9e-54 215.7 162 66.0
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 2.9e-54 215.7 154 70.1
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 2.9e-54 215.7 141 70.2
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 2.9e-54 215.7 179 63.1
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 2.9e-54 215.7 179 63.7
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 2.9e-54 215.7 181 61.9
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 2.9e-54 215.7 141 70.9
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 3.7e-54 215.3 141 70.9
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 3.7e-54 215.3 141 70.9
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 4.9e-54 214.9 133 74.4
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.9e-54 214.9 179 63.7
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 6.4e-54 214.5 165 63.0
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 6.4e-54 214.5 165 64.8
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 6.4e-54 214.5 186 60.8
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.1e-53 213.8 158 65.8
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.4e-53 213.4 187 59.4
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 2.4e-53 212.6 176 62.5
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 3.2e-53 212.2 177 61.0
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.1e-53 211.8 132 73.5
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 5.4e-53 211.5 199 56.8
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 7.1e-53 211.1 156 67.3
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 7.1e-53 211.1 160 66.9
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.2e-53 210.7 132 73.5
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.1e-52 209.5 132 72.7
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 2.7e-52 209.1 140 71.4
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.7e-52 209.1 130 74.6
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 3.5e-52 208.8 187 60.4
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 6.0e-52 208.0 226 53.5
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 7.8e-52 207.6 151 68.9
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 7.8e-52 207.6 156 70.5
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 7.8e-52 207.6 190 58.4
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.7e-51 206.5 130 72.3
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.7e-51 206.5 131 72.5
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 3.9e-51 205.3 156 66.0
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 3.9e-51 205.3 175 61.1
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.1e-50 203.8 150 66.0
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 1.1e-50 203.8 154 64.9
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 2.5e-50 202.6 186 57.0
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 5.6e-50 201.4 182 57.7
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.4e-48 196.1 157 66.9
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 6.8e-48 194.5 180 59.4
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.5e-47 193.4 137 66.4
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 1.5e-47 193.4 167 59.3
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.5e-47 193.4 182 54.4
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 3.4e-47 192.2 117 74.4
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 3.4e-47 192.2 115 76.5
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 5.8e-47 191.4 163 64.4
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 3.2e-45 185.7 244 45.5
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 3.2e-45 185.7 160 61.2
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 1.2e-44 183.7 129 66.7
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 2.7e-44 182.6 137 67.2
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 4.6e-44 181.8 150 61.3
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.1e-42 177.2 268 41.0
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 9.9e-39 164.1 123 59.3
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 7.9e-36 154.5 124 58.1
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.5e-34 149.4 127 63.0
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 4.3e-34 148.7 174 44.8
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.3e-33 147.1 87 75.9
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.3e-33 147.1 86 79.1
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.7e-30 136.7 111 64.9
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 2.4e-29 132.9 138 48.6
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 7.9e-28 127.9 149 52.3
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.9e-27 125.6 86 69.8
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 9.6e-26 120.9 72 75.0
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 3.7e-25 119.0 79 65.8
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 7.6e-23 111.3 72 68.1
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 8.4e-22 107.8 113 44.2
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 2.5e-21 106.3 158 34.2
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 9.3e-21 104.4 114 56.1
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.2e-20 104.0 60 75.0
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 1.8e-19 100.1 65 66.2
SGA_v2.0_scaffold5G02809 Striga asiatica HOM05D005248 ORTHO05D006409 4.2e-13 79.0 140 42.1
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.0e-11 74.3 88 52.3
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 2.8e-09 66.2 61 50.8
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 1.4e-08 63.9 35 77.1


User provided reference genes

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