Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 8.4e-238 826.6 419 100.0
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 9.8e-154 547.4 423 67.4
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 3.4e-146 522.3 415 65.8
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 1.4e-136 490.3 369 67.5
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 4.6e-135 485.3 411 61.1
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 1.1e-133 480.7 427 59.7
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 1.9e-128 463.4 419 57.3
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 2.4e-128 463.0 415 58.8
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 3.5e-127 459.1 422 56.4
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 3.9e-126 455.7 424 58.0
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 7.4e-125 451.4 418 56.5
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 1.3e-124 450.7 418 56.0
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 2.8e-124 449.5 366 61.5
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 1.4e-123 447.2 418 55.7
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.8e-123 446.8 415 58.3
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 2.6e-122 443.0 401 59.6
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.6e-122 443.0 417 55.9
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 2.6e-122 443.0 418 55.3
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 2.6e-122 443.0 372 62.4
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 3.4e-122 442.6 418 56.2
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.7e-121 440.3 428 55.6
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 2.9e-121 439.5 420 55.2
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 4.9e-121 438.7 428 55.4
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 4.9e-121 438.7 420 56.2
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 8.4e-121 438.0 422 55.5
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 3.2e-120 436.0 425 56.2
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 2.1e-119 433.3 419 56.1
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 1.3e-118 430.6 423 55.3
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 1.8e-118 430.3 425 54.8
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 5.1e-118 428.7 372 59.9
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 1.1e-117 427.6 416 55.5
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 5.6e-117 425.2 368 59.5
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 3.7e-116 422.5 419 55.4
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 3.1e-115 419.5 422 54.0
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 4.0e-115 419.1 421 54.9
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 6.9e-115 418.3 418 54.8
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 9.0e-115 417.9 372 58.9
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 9.0e-115 417.9 365 58.1
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 9.0e-115 417.9 366 60.4
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 1.2e-114 417.5 417 53.0
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 2.0e-114 416.8 425 53.4
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 3.4e-114 416.0 417 52.8
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 3.4e-114 416.0 419 54.4
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 7.6e-114 414.8 418 54.1
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 7.6e-114 414.8 422 55.0
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 1.0e-113 414.5 423 53.4
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 1.0e-113 414.5 371 57.1
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 1.0e-113 414.5 415 54.9
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.4e-112 410.6 369 57.5
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 1.9e-112 410.2 368 64.7
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 4.2e-112 409.1 369 58.0
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 5.5e-112 408.7 419 54.9
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 1.6e-111 407.1 405 55.8
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 2.1e-111 406.8 366 57.4
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 6.7e-110 401.7 367 57.2
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 1.1e-109 401.0 367 56.9
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 2.2e-108 396.7 417 52.8
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 2.0e-106 390.2 450 49.6
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.4e-106 389.4 418 51.7
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 1.2e-103 380.9 365 56.2
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 2.7e-103 379.8 367 55.6
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 6.1e-103 378.6 389 54.0
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 3.0e-102 376.3 361 57.6
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 3.9e-102 375.9 364 54.7
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 3.9e-102 375.9 373 57.1
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.1e-101 374.4 364 54.9
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 5.7e-101 372.1 377 51.7
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 4.8e-100 369.0 367 53.7
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 8.2e-100 368.2 380 52.1
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 8.2e-100 368.2 295 63.7
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 8.2e-100 368.2 371 50.7
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 2.2e-97 360.1 355 54.4
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 8.5e-97 358.2 299 61.2
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 2.5e-96 356.7 387 51.7
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 5.5e-96 355.5 408 49.0
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 3.6e-95 352.8 368 50.8
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 5.7e-93 345.5 417 46.3
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 7.4e-93 345.1 404 48.3
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 2.2e-92 343.6 361 50.7
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 2.8e-92 343.2 362 50.3
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 8.2e-92 341.7 368 50.0
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 1.2e-90 337.8 365 50.1
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 7.7e-90 335.1 367 48.5
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 1.3e-89 334.3 361 49.0
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 2.2e-89 333.6 364 49.7
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.6e-87 327.4 359 48.2
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 4.7e-87 325.9 370 48.9
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 1.0e-86 324.7 370 48.6
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 2.3e-86 323.6 287 58.2
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 3.0e-86 323.2 370 48.6
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 3.9e-86 322.8 370 48.4
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 6.7e-86 322.0 370 48.6
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 2.0e-85 320.5 375 46.1
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 3.7e-84 316.2 370 47.8
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.2e-81 307.0 368 47.0
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 5.0e-81 305.8 368 47.3
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 5.5e-80 302.4 409 45.0
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.6e-77 293.5 210 68.6
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 1.7e-76 290.8 392 43.9
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 1.8e-75 287.3 362 45.0
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 3.4e-69 266.5 343 46.1
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 1.1e-67 261.5 309 47.6
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 3.1e-67 260.0 359 43.5
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 5.9e-66 255.8 362 42.8
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 1.7e-65 254.2 309 46.3
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 5.0e-65 252.7 347 45.2
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 1.2e-55 221.5 389 35.5
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 3.9e-49 199.9 250 44.0
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 1.5e-48 198.0 314 38.9
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 4.3e-40 169.9 193 48.2
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 3.6e-39 166.8 366 33.9
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 8.3e-36 155.6 151 51.0
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 3.5e-34 150.2 112 63.4
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 8.1e-31 139.0 176 47.2
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 7.6e-29 132.5 84 78.6
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.9e-28 130.6 73 84.9
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 7.1e-27 125.9 344 29.7
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 1.6e-26 124.8 123 50.4
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 4.6e-26 123.2 202 37.6
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.1e-24 118.6 164 43.3
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 3.3e-24 117.1 71 77.5
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.8e-23 114.0 165 40.0
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.4e-22 110.9 65 83.1
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 7.6e-21 105.9 144 43.1
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 7.6e-21 105.9 144 43.1
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.7e-20 104.8 73 74.0
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 3.8e-20 103.6 162 39.5
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 3.3e-16 90.5 60 71.7
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 2.2e-12 77.8 66 60.6
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.2e-12 77.8 66 60.6
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 2.7e-10 70.9 108 40.7
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.8e-09 68.2 83 44.6
QL11p051325 Quercus lobata HOM05D005911 ORTHO05D007565 3.7e-07 60.5 44 68.2
Pp3s34_123 Physcomitrium patens HOM05D003546 ORTHO05D005667 6.9e-06 56.2 257 24.5


User provided reference genes

Program Settings