Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold449G51796 Striga asiatica HOM05D006364 ORTHO05D007968 2.3e-111 405.6 209 100.0
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 7.6e-22 108.2 150 50.0
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 1.9e-20 103.6 94 63.8
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 5.5e-20 102.1 95 62.1
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 5.5e-20 102.1 95 62.1
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 7.1e-20 101.7 94 62.8
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 7.1e-20 101.7 94 62.8
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 9.3e-20 101.3 94 61.7
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 1.2e-19 100.9 94 62.8
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 1.2e-19 100.9 94 62.8
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 2.1e-19 100.1 94 60.6
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 2.7e-19 99.8 94 61.7
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 2.7e-19 99.8 94 61.7
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 2.7e-19 99.8 94 61.7
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 3.5e-19 99.4 95 61.1
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 4.6e-19 99.0 94 59.6
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 4.6e-19 99.0 94 59.6
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 4.6e-19 99.0 94 60.6
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 6.0e-19 98.6 94 60.6
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 6.0e-19 98.6 94 60.6
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 6.0e-19 98.6 94 60.6
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 1.0e-18 97.8 94 59.6
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 1.0e-18 97.8 89 62.9
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 1.0e-18 97.8 94 58.5
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 1.3e-18 97.4 95 56.8
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 1.3e-18 97.4 91 61.5
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 1.3e-18 97.4 94 59.6
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 1.3e-18 97.4 91 61.5
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 1.3e-18 97.4 94 59.6
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 1.3e-18 97.4 94 59.6
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 1.8e-18 97.1 94 58.5
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 1.8e-18 97.1 91 61.5
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 1.8e-18 97.1 96 61.5
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 2.3e-18 96.7 91 60.4
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 3.0e-18 96.3 91 60.4
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 3.0e-18 96.3 94 58.5
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 3.0e-18 96.3 83 67.5
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 3.0e-18 96.3 94 58.5
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 3.9e-18 95.9 94 58.5
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 5.1e-18 95.5 91 58.2
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 6.7e-18 95.1 94 58.5
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 8.7e-18 94.7 94 57.4
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 8.7e-18 94.7 94 57.4
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 8.7e-18 94.7 92 58.7
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 8.7e-18 94.7 94 57.4
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 1.5e-17 94.0 94 57.4
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 1.5e-17 94.0 91 58.2
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 1.5e-17 94.0 94 58.5
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 1.9e-17 93.6 91 59.3
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 1.9e-17 93.6 91 59.3
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 1.9e-17 93.6 91 59.3
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 1.9e-17 93.6 91 59.3
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 1.9e-17 93.6 91 59.3
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 1.9e-17 93.6 89 59.6
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 1.9e-17 93.6 94 56.4
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 2.5e-17 93.2 87 60.9
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 2.5e-17 93.2 94 56.4
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 3.3e-17 92.8 91 59.3
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 3.3e-17 92.8 91 59.3
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 3.3e-17 92.8 94 57.4
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 4.3e-17 92.4 94 57.4
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 4.3e-17 92.4 90 57.8
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 5.7e-17 92.0 91 58.2
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 7.4e-17 91.7 96 54.2
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 7.4e-17 91.7 87 59.8
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 9.6e-17 91.3 94 54.3
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 1.3e-16 90.9 94 55.3
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 1.3e-16 90.9 94 55.3
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 1.3e-16 90.9 94 55.3
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 1.3e-16 90.9 94 55.3
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 1.6e-16 90.5 89 55.1
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 1.6e-16 90.5 91 54.9
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 1.6e-16 90.5 91 56.0
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 2.1e-16 90.1 95 52.6
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 2.1e-16 90.1 92 55.4
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 2.8e-16 89.7 94 54.3
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 2.8e-16 89.7 94 54.3
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 2.8e-16 89.7 94 54.3
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 2.8e-16 89.7 94 54.3
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 3.7e-16 89.4 91 56.0
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 4.8e-16 89.0 93 53.8
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 6.2e-16 88.6 94 53.2
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 8.2e-16 88.2 95 52.6
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 8.2e-16 88.2 95 52.6
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 8.2e-16 88.2 89 56.2
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 1.1e-15 87.8 94 53.2
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 1.1e-15 87.8 94 53.2
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 1.1e-15 87.8 94 53.2
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 1.1e-15 87.8 94 53.2
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 1.1e-15 87.8 94 53.2
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 1.4e-15 87.4 94 53.2
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 1.4e-15 87.4 94 53.2
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 1.4e-15 87.4 94 53.2
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 1.4e-15 87.4 89 56.2
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 1.8e-15 87.0 93 53.8
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 1.8e-15 87.0 94 53.2
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 1.8e-15 87.0 94 53.2
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 4.0e-15 85.9 134 42.5
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 4.5e-14 82.4 94 51.1
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 4.5e-14 82.4 94 51.1
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 4.5e-14 82.4 90 56.7
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 3.8e-13 79.3 77 62.3
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.1e-12 77.8 123 43.9
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 1.9e-12 77.0 118 47.5
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 7.9e-11 71.6 122 39.3
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 1.6e-08 63.9 62 59.7
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 3.7e-08 62.8 42 76.2
vmacro07987 Vaccinium macrocarpon HOM05D006364 ORTHO05D007968 3.7e-08 62.8 41 78.0
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 6.3e-08 62.0 119 40.3
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 1.4e-07 60.8 42 73.8
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 1.4e-07 60.8 49 67.3
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 1.8e-07 60.5 43 72.1
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 2.4e-07 60.1 39 79.5
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 1.2e-06 57.8 99 38.4
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 3.4e-06 56.2 65 49.2
MD13G1146500 Malus domestica HOM05D006364 ORTHO05D007968 5.9e-06 55.5 51 56.9
SalBow6G4934 Salvia bowleyana HOM05D006364 ORTHO05D007968 5.9e-06 55.5 29 86.2


User provided reference genes

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