Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold447G51762 Striga asiatica HOM05D000346 ORTHO05D004932 8.4e-76 287.0 146 100.0
SGA_v2.0_scaffold79G25571 Striga asiatica HOM05D000346 ORTHO05D004932 4.8e-55 218.0 117 94.9
SGA_v2.0_scaffold79G25572 Striga asiatica HOM05D000346 ORTHO05D004932 1.7e-44 183.0 111 85.6
Atru.chr6.2144 Acer truncatum HOM05D000346 ORTHO05D004932 2.4e-22 109.4 123 54.5
Migut.A00483 Erythranthe guttata HOM05D000346 ORTHO05D004932 5.9e-21 104.8 125 54.4
Potri.001G127300 Populus trichocarpa HOM05D000346 ORTHO05D004932 5.9e-21 104.8 123 50.4
arahy.Tifrunner.gnm1.ann1.76WW8S Arachis hypogaea HOM05D000346 ORTHO05D004932 7.7e-21 104.4 121 48.8
arahy.Tifrunner.gnm1.ann1.BK64GE Arachis hypogaea HOM05D000346 ORTHO05D004932 7.7e-21 104.4 121 48.8
CSS0008904 Camellia sinensis var. sinensis HOM05D007105 ORTHO05D009304 1.3e-20 103.6 123 50.4
CSS0044734 Camellia sinensis var. sinensis HOM05D007105 ORTHO05D009304 1.3e-20 103.6 123 50.4
Ciclev10004016m.g Citrus clementina HOM05D007105 ORTHO05D004932 1.3e-20 103.6 127 50.4
Sabra01G0098100 Salix brachista HOM05D000346 ORTHO05D004932 1.7e-20 103.2 123 50.4
MSTRG.11850 Avicennia marina HOM05D000346 ORTHO05D004932 2.2e-20 102.8 123 50.4
Thecc.03G321600 Theobroma cacao HOM05D000346 ORTHO05D004932 3.8e-20 102.1 123 51.2
TPR.G34457 Trifolium pratense HOM05D000346 ORTHO05D004932 5.0e-20 101.7 124 51.6
Actinidia30336 Actinidia chinensis HOM05D000346 ORTHO05D004932 6.5e-20 101.3 123 50.4
Cpa.g.sc24.37 Carica papaya HOM05D000346 ORTHO05D004932 6.5e-20 101.3 123 51.2
Gohir.A08G148100 Gossypium hirsutum HOM05D000346 ORTHO05D004932 6.5e-20 101.3 121 52.1
Dinv09418 Davidia involucrata HOM05D000346 ORTHO05D004932 8.5e-20 100.9 123 49.6
Manes.17G000600 Manihot esculenta HOM05D000346 ORTHO05D004932 8.5e-20 100.9 125 49.6
Sabra03G0073200 Salix brachista HOM05D000346 ORTHO05D004932 8.5e-20 100.9 123 48.8
Cfa012618 Carpinus fangiana HOM05D000346 ORTHO05D004932 1.1e-19 100.5 124 49.2
Lj8C368G1 Lonicera japonica HOM05D000346 ORTHO05D004932 1.1e-19 100.5 123 51.2
Dinv37441 Davidia involucrata HOM05D000346 ORTHO05D004932 1.9e-19 99.8 123 50.4
Gohir.D08G169300 Gossypium hirsutum HOM05D000346 ORTHO05D004932 1.9e-19 99.8 121 51.2
Gorai.004G176500 Gossypium raimondii HOM05D000346 ORTHO05D004932 1.9e-19 99.8 121 51.2
Potri.003G106400 Populus trichocarpa HOM05D000346 ORTHO05D004932 1.9e-19 99.8 123 48.8
QL12p002936 Quercus lobata HOM05D000346 ORTHO05D004932 1.9e-19 99.8 123 49.6
Actinidia01236 Actinidia chinensis HOM05D007105 ORTHO05D004932 2.5e-19 99.4 123 50.4
SalBow4G2542 Salvia bowleyana HOM05D000346 ORTHO05D004932 2.5e-19 99.4 123 51.2
GSVIVG01036908001 Vitis vinifera HOM05D007105 ORTHO05D004932 2.5e-19 99.4 125 48.0
Haze_08038 Corylus avellana HOM05D000346 ORTHO05D004932 3.2e-19 99.0 124 49.2
Ca_25059_v3 Cicer arietinum L. HOM05D000346 ORTHO05D004932 4.2e-19 98.6 124 50.0
DCAR_004541 Daucus carota HOM05D000346 ORTHO05D004932 9.4e-19 97.4 126 51.6
Duzib205G1034 Durio zibethinus HOM05D000346 ORTHO05D004932 9.4e-19 97.4 121 50.4
DCAR_000712 Daucus carota HOM05D000346 ORTHO05D004932 1.2e-18 97.1 124 50.8
Lalb_Chr16g0380511 Lupinus albus HOM05D000346 ORTHO05D004932 1.2e-18 97.1 123 48.8
COL.COLO4_16733 Corchorus olitorius HOM05D000346 ORTHO05D004932 1.6e-18 96.7 124 52.4
Eucgr.E01168 Eucalyptus grandis HOM05D000346 ORTHO05D004932 1.6e-18 96.7 123 52.0
Hma1.2p1_0262F.1_g105240 Hydrangea macrophylla HOM05D000346 ORTHO05D004932 1.6e-18 96.7 123 49.6
vmacro00107 Vaccinium macrocarpon HOM05D000346 ORTHO05D004932 1.6e-18 96.7 123 49.6
MSTRG.25755 Avicennia marina HOM05D000346 ORTHO05D004932 2.7e-18 95.9 122 48.4
SGA_v2.0_scaffold89G27366 Striga asiatica HOM05D000346 ORTHO05D004932 2.7e-18 95.9 120 53.3
PGR042G2778 Punica granatum HOM05D000346 ORTHO05D004932 3.6e-18 95.5 129 50.4
Lj4g0004243 Lotus japonicus HOM05D000346 ORTHO05D004932 6.1e-18 94.7 123 48.8
Lalb_Chr05g0215261 Lupinus albus HOM05D000346 ORTHO05D004932 6.1e-18 94.7 123 47.2
THA.LOC104812718 Tarenaya hassleriana HOM05D000346 ORTHO05D004932 6.1e-18 94.7 123 47.2
CSS0040492 Camellia sinensis var. sinensis HOM05D000346 ORTHO05D004932 8.0e-18 94.4 123 48.8
Glyma.01G152100 Glycine max HOM05D000346 ORTHO05D004932 8.0e-18 94.4 123 48.8
Glyma.09G217300 Glycine max HOM05D000346 ORTHO05D004932 8.0e-18 94.4 123 49.6
Lj2g0021989 Lotus japonicus HOM05D000346 ORTHO05D004932 8.0e-18 94.4 125 50.4
Medtr5g025960 Medicago truncatula HOM05D000346 ORTHO05D004932 8.0e-18 94.4 124 47.6
MELO3C010537.2 Cucumis melo HOM05D000346 ORTHO05D004932 1.0e-17 94.0 123 45.5
CsaV3_4G037890 Cucumis sativus L. HOM05D000346 ORTHO05D004932 1.0e-17 94.0 123 45.5
Psat2g144680 Pisum sativum HOM05D000346 ORTHO05D004932 1.0e-17 94.0 124 49.2
Nn3g19130 Nelumbo nucifera HOM05D000346 ORTHO05D004932 1.8e-17 93.2 124 50.0
Phvul.002G123300 Phaseolus vulgaris HOM05D000346 ORTHO05D004932 1.8e-17 93.2 124 48.4
RcHm_v2.0_Chr7g0215031 Rosa chinensis HOM05D000346 ORTHO05D004932 2.3e-17 92.8 123 48.8
VMungo1215G0137 Vigna mungo HOM05D000346 ORTHO05D004932 3.9e-17 92.0 123 48.8
Aa31LG9G15820 Aethionema arabicum HOM05D000346 ORTHO05D004932 6.7e-17 91.3 123 45.5
Rhsim11G0040100 Rhododendron simsii HOM05D000346 ORTHO05D004932 8.8e-17 90.9 123 47.2
CAN.G797.12 Capsicum annuum HOM05D000346 ORTHO05D004932 1.5e-16 90.1 110 50.9
CiPaw.12G046800 Carya illinoinensis HOM05D000346 ORTHO05D004932 1.5e-16 90.1 128 46.1
FvH4_5g24650 Fragaria vesca HOM05D000346 ORTHO05D004932 1.5e-16 90.1 123 47.2
FAN13G0250 Fragaria x ananassa HOM05D000346 ORTHO05D004932 1.5e-16 90.1 123 47.2
FAN13G0414 Fragaria x ananassa HOM05D000346 ORTHO05D004932 1.5e-16 90.1 123 47.2
Hma1.2p1_3942F.1_g338040 Hydrangea macrophylla HOM05D000346 ORTHO05D004932 2.0e-16 89.7 123 48.0
Peaxi162Scf00014g01819 Petunia axillaris HOM05D000346 ORTHO05D004932 2.0e-16 89.7 119 51.3
FAN08G2890 Fragaria x ananassa HOM05D000346 ORTHO05D004932 2.6e-16 89.4 123 47.2
FAN18G3968 Fragaria x ananassa HOM05D000346 ORTHO05D004932 2.6e-16 89.4 123 47.2
FAN04G2100 Fragaria x ananassa HOM05D000346 ORTHO05D004932 3.3e-16 89.0 123 47.2
Nn1g09308 Nelumbo nucifera HOM05D000346 ORTHO05D004932 3.3e-16 89.0 124 46.0
TWI60G0393 Tripterygium wilfordii HOM05D000346 ORTHO05D004932 3.3e-16 89.0 123 48.8
Sed0024389 Sechium edule HOM05D000346 ORTHO05D004932 4.4e-16 88.6 123 44.7
TWI34G0905 Tripterygium wilfordii HOM05D000346 ORTHO05D004932 4.4e-16 88.6 122 48.4
MD06G1012300 Malus domestica HOM05D000346 ORTHO05D004932 7.4e-16 87.8 123 48.8
CARHR286960 Cardamine hirsuta HOM05D000346 ORTHO05D004932 9.7e-16 87.4 130 45.4
unitig_748.g8151 Utricularia gibba HOM05D000346 ORTHO05D004932 9.7e-16 87.4 114 55.3
unitig_32.g10958 Utricularia gibba HOM05D000346 ORTHO05D004932 1.7e-15 86.7 113 53.1
Aa31LG2G14430 Aethionema arabicum HOM05D000346 ORTHO05D004932 2.2e-15 86.3 123 43.1
Ah.12g058320 Amaranthus hybridus HOM05D000346 ORTHO05D004932 2.2e-15 86.3 122 44.3
CAN.G947.25 Capsicum annuum HOM05D000346 ORTHO05D004932 2.2e-15 86.3 110 49.1
ATR0568G128 Amborella trichopoda HOM05D000346 ORTHO05D004932 3.7e-15 85.5 124 46.8
Sp1g27330 Schrenkiella parvula HOM05D000346 ORTHO05D004932 3.7e-15 85.5 128 44.5
Phvul.003G277800 Phaseolus vulgaris HOM05D000346 ORTHO05D004932 4.8e-15 85.1 122 44.3
arahy.Tifrunner.gnm1.ann1.JWD65V Arachis hypogaea HOM05D000346 ORTHO05D004932 6.3e-15 84.7 124 42.7
Thhalv10006757m.g Eutrema salsugineum HOM05D007105 ORTHO05D004932 1.1e-14 84.0 123 43.1
Carub.0001s2997 Capsella rubella HOM05D000346 ORTHO05D004932 1.4e-14 83.6 128 43.8
Prupe.5G015000 Prunus persica HOM05D000346 ORTHO05D004932 1.4e-14 83.6 123 46.3
AL1G49410 Arabidopsis lyrata HOM05D000346 ORTHO05D004932 1.8e-14 83.2 143 41.3
Nitab4.5_0009906g0020 Nicotiana tabacum HOM05D000346 ORTHO05D004932 1.8e-14 83.2 115 49.6
Glyma.16G107900 Glycine max HOM05D000346 ORTHO05D004932 2.4e-14 82.8 123 46.3
arahy.Tifrunner.gnm1.ann1.EN6SL9 Arachis hypogaea HOM05D000346 ORTHO05D004932 4.1e-14 82.0 124 41.9
Nitab4.5_0008291g0010 Nicotiana tabacum HOM05D000346 ORTHO05D004932 4.1e-14 82.0 118 45.8
AT1G31650 Arabidopsis thaliana HOM05D000346 ORTHO05D004932 5.3e-14 81.6 143 41.3
EL10Ac5g12601 Beta vulgaris HOM05D000346 ORTHO05D004932 5.3e-14 81.6 124 41.1
PSO063G5543 Papaver somniferum HOM05D000346 ORTHO05D004932 5.3e-14 81.6 123 46.3
BcaB07g32812 Brassica carinata HOM05D000346 ORTHO05D004932 7.0e-14 81.3 126 41.3
Thhalv10016557m.g Eutrema salsugineum HOM05D000346 ORTHO05D004932 7.0e-14 81.3 118 44.9
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 9.1e-14 80.9 127 43.3
TAR629G0458 Trochodendron aralioides HOM05D000346 ORTHO05D004932 9.1e-14 80.9 122 43.4
Cc00_g09440 Coffea canephora HOM05D000346 ORTHO05D004932 1.2e-13 80.5 119 42.9
ECA233G2848 Erigeron canadensis HOM05D000346 ORTHO05D004932 1.2e-13 80.5 122 45.9
Nitab4.5_0004072g0010 Nicotiana tabacum HOM05D000346 ORTHO05D004932 1.2e-13 80.5 118 45.8
CDE12G0201 Ceratophyllum demersum HOM05D000346 ORTHO05D004932 1.6e-13 80.1 123 43.9
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 2.6e-13 79.3 123 42.3
Hund11067 Selenicereus undatus HOM05D000346 ORTHO05D004932 2.6e-13 79.3 119 41.2
BcaC05g27182 Brassica carinata HOM05D000346 ORTHO05D004932 7.7e-13 77.8 128 42.2
BolC5t31809H Brassica oleracea HOM05D000346 ORTHO05D004932 7.7e-13 77.8 128 42.2
CANSAT35G1687 Cannabis sativa HOM05D000346 ORTHO05D004932 1.0e-12 77.4 116 45.7
Lalb_Chr05g0229311 Lupinus albus HOM05D000346 ORTHO05D004932 1.0e-12 77.4 123 40.7
Solyc12g096220.2 Solanum lycopersicum HOM05D001080 ORTHO05D004932 1.0e-12 77.4 113 46.9
AL4G31670 Arabidopsis lyrata HOM05D000346 ORTHO05D004932 1.3e-12 77.0 120 43.3
C05p30760 Brassica napus HOM05D000346 ORTHO05D004932 1.3e-12 77.0 130 41.5
Sed0017312 Sechium edule HOM05D000346 ORTHO05D004932 1.3e-12 77.0 123 41.5
TAR636G1441 Trochodendron aralioides HOM05D000346 ORTHO05D004932 1.7e-12 76.6 123 42.3
TAR636G2097 Trochodendron aralioides HOM05D000346 ORTHO05D004932 1.7e-12 76.6 123 42.3
Glyma.16G076100 Glycine max HOM05D000346 ORTHO05D004932 5.0e-12 75.1 123 42.3
Sopen12g032070 Solanum pennellii HOM05D000346 ORTHO05D004932 5.0e-12 75.1 113 45.1
VMungo0251G2282 Vigna mungo HOM05D000346 ORTHO05D004932 5.0e-12 75.1 122 41.0
AUR62017402 Chenopodium quinoa HOM05D000346 ORTHO05D004932 6.5e-12 74.7 122 39.3
AUR62010498 Chenopodium quinoa HOM05D000346 ORTHO05D004932 8.5e-12 74.3 122 39.3
Lsat_1_v5_gn_6_74280 Lactuca sativa HOM05D000346 ORTHO05D004932 8.5e-12 74.3 122 40.2
BcaC07g37752 Brassica carinata HOM05D000346 ORTHO05D004932 1.1e-11 73.9 121 41.3
HanXRQChr03g0084661 Helianthus annuus HOM05D000346 ORTHO05D004932 1.5e-11 73.6 112 44.6
PSO782G3074 Papaver somniferum HOM05D000346 ORTHO05D004932 1.5e-11 73.6 123 43.9
Hma1.2p1_0954F.1_g241190 Hydrangea macrophylla HOM05D000346 ORTHO05D004932 2.5e-11 72.8 104 45.2
CAN.G22.29 Capsicum annuum HOM05D000346 ORTHO05D004932 3.2e-11 72.4 121 43.8
HanXRQChr13g0412671 Helianthus annuus HOM05D000346 ORTHO05D004932 3.2e-11 72.4 127 40.9
HanXRQChr08g0226991 Helianthus annuus HOM05D000346 ORTHO05D004932 7.2e-11 71.2 123 41.5
Nitab4.5_0006234g0010 Nicotiana tabacum HOM05D000346 ORTHO05D004932 7.2e-11 71.2 116 44.8
BcaB02g09410 Brassica carinata HOM05D000346 ORTHO05D004932 2.1e-10 69.7 124 40.3
Os02g0702600 Oryza sativa ssp. japonica HOM05D000346 ORTHO05D004932 2.7e-10 69.3 130 42.3
Sp4g17840 Schrenkiella parvula HOM05D000346 ORTHO05D004932 2.7e-10 69.3 128 39.1
Solyc08g075120.3 Solanum lycopersicum HOM05D000346 ORTHO05D004932 2.7e-10 69.3 122 43.4
Sopen08g023750 Solanum pennellii HOM05D000346 ORTHO05D004932 2.7e-10 69.3 122 43.4
Sopen08g023760 Solanum pennellii HOM05D000346 ORTHO05D004932 2.7e-10 69.3 122 43.4
ECA240G2821 Erigeron canadensis HOM05D000346 ORTHO05D004932 3.6e-10 68.9 120 40.0
PGSC0003DMG400020811 Solanum tuberosum HOM05D000346 ORTHO05D004932 6.1e-10 68.2 122 42.6
Hund14313 Selenicereus undatus HOM05D000346 ORTHO05D004932 8.0e-10 67.8 119 37.8
Lsat_1_v5_gn_6_17380 Lactuca sativa HOM05D000346 ORTHO05D004932 1.0e-09 67.4 123 43.9
vmacro18550 Vaccinium macrocarpon HOM05D000346 ORTHO05D004932 1.4e-09 67.0 123 41.5
Zm00001eb251920 Zea mays HOM05D000346 ORTHO05D004932 1.4e-09 67.0 128 39.8
Zm00001eb188240 Zea mays HOM05D000346 ORTHO05D004932 3.0e-09 65.9 129 41.9
HPP92_015143 Vanilla planifolia HOM05D000346 ORTHO05D004932 6.7e-09 64.7 124 39.5
Rhsim07G0141200 Rhododendron simsii HOM05D000346 ORTHO05D004932 8.8e-09 64.3 129 38.8
HanXRQChr17g0558071 Helianthus annuus HOM05D000346 ORTHO05D004932 1.1e-06 57.4 120 39.2
BolC8t48133H Brassica oleracea HOM05D000346 ORTHO05D004932 2.4e-06 56.2 116 35.3
Sc07g0008140 Simmondsia chinensis HOM05D000346 ORTHO05D004932 4.1e-06 55.5 120 37.5
C04p12460 Brassica napus HOM05D000346 ORTHO05D004932 5.3e-06 55.1 126 34.9
BolC4t22895H Brassica oleracea HOM05D000346 ORTHO05D004932 5.3e-06 55.1 126 34.9
Lj3g0012629 Lotus japonicus HOM05D000346 ORTHO05D000326 7.0e-06 54.7 111 36.9


User provided reference genes

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