Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 3.8e-168 594.7 299 100.0
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 3.9e-128 461.8 287 82.2
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 5.3e-117 424.9 287 77.0
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 4.5e-108 395.2 288 69.4
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 1.0e-104 384.0 289 68.2
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.4e-98 363.6 297 65.0
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 2.1e-97 359.8 254 71.3
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 7.9e-97 357.8 276 66.7
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.0e-96 357.5 288 65.3
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.8e-96 356.7 288 65.3
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 1.8e-96 356.7 249 71.1
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 5.1e-96 355.1 293 64.5
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 2.5e-95 352.8 269 67.3
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 2.5e-95 352.8 281 66.5
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 3.3e-95 352.4 245 71.0
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 3.3e-95 352.4 236 72.5
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 3.7e-94 349.0 281 63.0
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 4.8e-94 348.6 273 66.3
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 1.1e-93 347.4 240 71.7
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 1.1e-93 347.4 268 67.2
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 1.4e-93 347.1 250 69.2
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 1.8e-93 346.7 278 65.5
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 1.8e-93 346.7 240 69.6
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 1.8e-93 346.7 266 65.0
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 2.4e-93 346.3 273 64.8
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 2.4e-93 346.3 253 69.2
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 3.1e-93 345.9 277 65.3
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 3.1e-93 345.9 288 64.6
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 4.1e-93 345.5 267 65.9
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 4.1e-93 345.5 267 65.9
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 5.3e-93 345.1 254 69.3
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 6.9e-93 344.7 272 65.8
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 6.9e-93 344.7 269 65.4
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 6.9e-93 344.7 269 65.4
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 6.9e-93 344.7 288 63.5
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 6.9e-93 344.7 248 69.8
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 9.0e-93 344.4 274 65.0
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 1.2e-92 344.0 274 65.7
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 2.6e-92 342.8 297 60.3
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 2.6e-92 342.8 249 69.1
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 3.4e-92 342.4 280 63.2
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 4.5e-92 342.0 237 70.9
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 4.5e-92 342.0 272 65.1
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 4.5e-92 342.0 257 66.5
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 7.7e-92 341.3 236 70.8
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 1.3e-91 340.5 274 63.5
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 1.3e-91 340.5 273 65.2
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 1.3e-91 340.5 272 65.4
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 1.7e-91 340.1 271 64.2
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 1.7e-91 340.1 255 68.2
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.7e-91 340.1 237 69.6
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 2.9e-91 339.3 237 69.2
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 2.9e-91 339.3 289 63.3
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 3.8e-91 339.0 249 68.3
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 3.8e-91 339.0 247 68.4
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 5.0e-91 338.6 281 65.1
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 5.0e-91 338.6 277 62.8
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 6.5e-91 338.2 283 63.6
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 8.5e-91 337.8 280 63.6
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 1.1e-90 337.4 291 62.5
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 1.4e-90 337.0 272 63.6
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 1.9e-90 336.7 275 62.2
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 1.9e-90 336.7 236 70.3
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 3.2e-90 335.9 266 65.0
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 3.2e-90 335.9 278 63.7
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 4.2e-90 335.5 270 64.1
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 4.2e-90 335.5 277 62.8
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 5.5e-90 335.1 275 61.8
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 5.5e-90 335.1 275 61.8
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 7.2e-90 334.7 239 69.0
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 9.4e-90 334.3 265 66.0
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 9.4e-90 334.3 249 68.3
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 9.4e-90 334.3 278 65.8
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 1.2e-89 334.0 258 64.0
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 1.2e-89 334.0 276 60.9
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 1.2e-89 334.0 276 60.9
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.2e-89 334.0 275 61.5
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 1.6e-89 333.6 276 60.9
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 1.6e-89 333.6 247 68.4
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 2.1e-89 333.2 240 69.6
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 2.1e-89 333.2 238 68.9
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 2.7e-89 332.8 240 68.8
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 2.7e-89 332.8 278 61.5
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 2.7e-89 332.8 266 65.8
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 4.6e-89 332.0 280 63.9
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 6.1e-89 331.6 275 60.7
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.0e-88 330.9 273 62.3
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 1.4e-88 330.5 269 64.3
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 1.4e-88 330.5 247 67.6
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 1.8e-88 330.1 224 72.3
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 2.3e-88 329.7 285 61.1
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 3.9e-88 328.9 278 62.9
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 5.1e-88 328.6 237 67.9
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.7e-88 328.2 237 67.5
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.1e-87 327.4 247 67.2
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 1.1e-87 327.4 273 61.9
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 1.5e-87 327.0 278 60.1
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 1.7e-86 323.6 223 71.7
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 2.8e-86 322.8 236 66.5
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 1.8e-85 320.1 240 65.8
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.2e-84 317.4 236 65.7
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 1.5e-84 317.0 245 64.1
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 7.7e-84 314.7 244 63.1
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 1.7e-83 313.5 238 65.1
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 2.2e-83 313.2 266 59.8
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.2e-81 307.4 298 56.0
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.2e-81 307.4 220 68.2
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 9.7e-79 297.7 281 57.7
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 3.1e-77 292.7 181 79.0
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 5.3e-77 292.0 225 63.6
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 7.0e-77 291.6 393 44.3
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 2.0e-76 290.0 240 60.8
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.0e-75 287.7 237 59.5
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.4e-74 283.9 237 60.8
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 1.4e-74 283.9 269 58.0
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 3.2e-74 282.7 236 61.4
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 7.0e-69 265.0 236 57.6
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 8.0e-65 251.5 192 67.2
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 1.4e-64 250.8 242 55.8
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 1.7e-62 243.8 177 65.5
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 2.2e-62 243.4 279 49.1
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 8.8e-56 221.5 171 63.2
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 8.8e-56 221.5 251 48.2
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 9.8e-55 218.0 227 51.5
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 1.1e-53 214.5 225 52.9
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 9.1e-53 211.5 192 56.8
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.0e-51 208.0 179 62.0
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 2.3e-48 196.8 143 71.3
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.5e-47 194.1 281 42.7
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 2.1e-41 173.7 276 40.2
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 6.1e-41 172.2 103 74.8
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 3.1e-40 169.9 220 45.0
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 2.9e-38 163.3 224 38.8
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.4e-37 160.2 195 44.1
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 9.2e-37 158.3 85 87.1
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 3.3e-34 149.8 165 47.9
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 9.5e-34 148.3 126 59.5
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 1.8e-32 144.1 125 60.8
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.0e-27 128.3 84 73.8
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-27 127.5 103 60.2
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.5e-26 124.4 72 77.8
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 2.2e-22 110.5 93 58.1
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 2.4e-21 107.1 88 59.1
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.5e-18 97.8 63 65.1
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 4.3e-18 96.3 212 30.7
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 5.8e-15 85.9 86 53.5
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.3e-11 74.7 192 33.3
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.3e-11 73.9 46 65.2
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 9.6e-10 68.6 122 33.6
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 2.0e-07 60.8 116 31.9
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.7e-06 57.8 28 92.9


User provided reference genes

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