Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold443G51693 Striga asiatica HOM05D005811 ORTHO05D007070 7.3e-100 367.5 219 100.0
MSTRG.18574 Avicennia marina HOM05D005811 ORTHO05D007070 1.1e-18 97.8 65 78.5
unitig_899.g15251 Utricularia gibba HOM05D005811 ORTHO05D007070 8.5e-16 88.2 65 69.2
Solyc06g076790.1 Solanum lycopersicum HOM05D005811 ORTHO05D007070 4.2e-15 85.9 67 68.7
Sopen06g033180 Solanum pennellii HOM05D005811 ORTHO05D007070 4.2e-15 85.9 67 68.7
Nitab4.5_0000102g0070 Nicotiana tabacum HOM05D005811 ORTHO05D007070 3.6e-14 82.8 65 69.2
CAN.G394.109 Capsicum annuum HOM05D005811 ORTHO05D007070 4.7e-14 82.4 71 67.6
Dinv28620 Davidia involucrata HOM05D005811 ORTHO05D007070 6.1e-14 82.0 65 70.8
Dinv14462 Davidia involucrata HOM05D005811 ORTHO05D007070 5.2e-13 79.0 66 69.7
PGSC0003DMG400004165 Solanum tuberosum HOM05D005811 ORTHO05D007070 5.2e-13 79.0 66 68.2
DCAR_018965 Daucus carota HOM05D005811 ORTHO05D007070 9.8e-12 74.7 67 58.2
Migut.D02091 Erythranthe guttata HOM05D005811 ORTHO05D007070 1.3e-11 74.3 66 63.6
Nitab4.5_0000010g0190 Nicotiana tabacum HOM05D005811 ORTHO05D007070 3.7e-11 72.8 77 55.8
Ciclev10029657m.g Citrus clementina HOM05D005811 ORTHO05D007070 6.3e-11 72.0 42 81.0
unitig_746.g26735 Utricularia gibba HOM05D005811 ORTHO05D007070 8.3e-11 71.6 65 60.0
Nitab4.5_0004144g0020 Nicotiana tabacum HOM05D005811 ORTHO05D007070 1.4e-10 70.9 77 55.8
Sc06g0008440 Simmondsia chinensis HOM05D005811 ORTHO05D007070 1.4e-10 70.9 42 81.0
MBI14_g04429_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 4.1e-10 69.3 65 61.5
Nn2g13640 Nelumbo nucifera HOM05D005811 ORTHO05D007070 5.4e-10 68.9 42 81.0
Lj6g0027141 Lotus japonicus HOM05D005811 ORTHO05D007070 1.2e-09 67.8 65 58.5
Actinidia34450 Actinidia chinensis HOM05D000731 ORTHO05D003068 1.6e-09 67.4 65 61.5
A06p27110 Brassica napus HOM05D005811 ORTHO05D007070 2.7e-09 66.6 42 78.6
BraA06t25647Z Brassica rapa HOM05D005811 ORTHO05D007070 2.7e-09 66.6 42 78.6
Nn2g11406 Nelumbo nucifera HOM05D005811 ORTHO05D007070 3.5e-09 66.2 65 60.0
Prupe.6G060300 Prunus persica HOM05D005811 ORTHO05D007070 3.5e-09 66.2 65 60.0
BcaC01g02249 Brassica carinata HOM05D005811 ORTHO05D007070 4.5e-09 65.9 47 70.2
BolC3t19011H Brassica oleracea HOM05D005811 ORTHO05D007070 4.5e-09 65.9 47 70.2
Cpa.g.sc112.49 Carica papaya HOM05D005811 ORTHO05D007070 4.5e-09 65.9 65 58.5
CiPaw.14G060800 Carya illinoinensis HOM05D005811 ORTHO05D007070 5.9e-09 65.5 65 53.8
Thhalv10010831m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 5.9e-09 65.5 42 76.2
Manes.02G121312 Manihot esculenta HOM05D005811 ORTHO05D007070 5.9e-09 65.5 42 73.8
Potri.001G249600 Populus trichocarpa HOM05D005811 ORTHO05D007070 5.9e-09 65.5 42 71.4
Sabra16G0151600 Salix brachista HOM05D005811 ORTHO05D007070 5.9e-09 65.5 42 71.4
Sp5g14660 Schrenkiella parvula HOM05D005811 ORTHO05D007070 5.9e-09 65.5 42 76.2
BcaB01g00949 Brassica carinata HOM05D005811 ORTHO05D007070 7.8e-09 65.1 44 72.7
A06p20460 Brassica napus HOM05D005811 ORTHO05D007070 7.8e-09 65.1 44 72.7
BNapus_Darmor_BZH_scaffold_82p00020 Brassica napus HOM05D005811 ORTHO05D007070 7.8e-09 65.1 47 70.2
C03p71300 Brassica napus HOM05D005811 ORTHO05D007070 7.8e-09 65.1 44 72.7
BolC3t19415H Brassica oleracea HOM05D005811 ORTHO05D007070 7.8e-09 65.1 44 72.7
BraA06t25121Z Brassica rapa HOM05D005811 ORTHO05D007070 7.8e-09 65.1 44 72.7
CANSAT54G2446 Cannabis sativa HOM05D005811 ORTHO05D007070 1.0e-08 64.7 65 55.4
Glyma.18G065900 Glycine max HOM05D005811 ORTHO05D007070 1.0e-08 64.7 42 73.8
Manes.01G163700 Manihot esculenta HOM05D005811 ORTHO05D007070 1.0e-08 64.7 66 56.1
Duzib170G0110 Durio zibethinus HOM05D005811 ORTHO05D007070 1.3e-08 64.3 65 58.5
MBI06_g39483_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 1.3e-08 64.3 65 60.0
MBI06_g42850_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 1.3e-08 64.3 65 60.0
Thecc.09G304900 Theobroma cacao HOM05D005811 ORTHO05D007070 1.3e-08 64.3 65 58.5
vmacro02985 Vaccinium macrocarpon HOM05D005811 ORTHO05D007070 1.3e-08 64.3 65 58.5
Phvul.006G065100 Phaseolus vulgaris HOM05D005811 ORTHO05D007070 1.7e-08 63.9 42 73.8
Haze_24267 Corylus avellana HOM05D005811 ORTHO05D007070 2.3e-08 63.5 65 56.9
Duzib150G1392 Durio zibethinus HOM05D005811 ORTHO05D007070 2.3e-08 63.5 65 56.9
Lsat_1_v5_gn_8_71220 Lactuca sativa HOM05D005811 ORTHO05D007070 2.3e-08 63.5 83 45.8
QL01p037422 Quercus lobata HOM05D005811 ORTHO05D007070 2.3e-08 63.5 65 56.9
BcaC01g01857 Brassica carinata HOM05D005811 ORTHO05D007070 3.8e-08 62.8 44 70.5
BcaC01g01858 Brassica carinata HOM05D005811 ORTHO05D007070 3.8e-08 62.8 44 70.5
Carub.0008s1950 Capsella rubella HOM05D005811 ORTHO05D007070 3.8e-08 62.8 44 65.9
MD03G1073700 Malus domestica HOM05D005811 ORTHO05D007070 3.8e-08 62.8 65 60.0
CiPaw.13G080400 Carya illinoinensis HOM05D005811 ORTHO05D007070 5.0e-08 62.4 65 53.8
Potri.009G043600 Populus trichocarpa HOM05D005811 ORTHO05D007070 5.0e-08 62.4 39 74.4
Sabra09G0031000 Salix brachista HOM05D005811 ORTHO05D007070 5.0e-08 62.4 65 60.0
VMungo0540G1301 Vigna mungo HOM05D005811 ORTHO05D007070 5.0e-08 62.4 42 71.4
BcaB02g10703 Brassica carinata HOM05D005811 ORTHO05D007070 6.6e-08 62.0 58 56.9
PGR102G1689 Punica granatum HOM05D005811 ORTHO05D007070 6.6e-08 62.0 65 56.9
CARHR272810 Cardamine hirsuta HOM05D005811 ORTHO05D007070 8.6e-08 61.6 48 60.4
Cfa011662 Carpinus fangiana HOM05D005811 ORTHO05D007070 8.6e-08 61.6 65 53.8
MBI05_g30574_MAGBIO Magnolia biondii HOM05D000339 ORTHO05D000212 8.6e-08 61.6 41 78.0
Hund04884 Selenicereus undatus HOM05D004319 ORTHO05D007070 8.6e-08 61.6 42 66.7
TPR.G24035 Trifolium pratense HOM05D005811 ORTHO05D007070 8.6e-08 61.6 65 55.4
Hma1.2p1_1010F.1_g247360 Hydrangea macrophylla HOM05D005811 ORTHO05D007070 1.1e-07 61.2 65 58.5
THA.LOC104799405 Tarenaya hassleriana HOM05D005811 ORTHO05D007070 1.1e-07 61.2 42 69.0
Carub.0005s1331 Capsella rubella HOM05D005811 ORTHO05D007070 1.5e-07 60.8 45 68.9
Duzib168G1366 Durio zibethinus HOM05D005811 ORTHO05D007070 1.5e-07 60.8 42 66.7
TPR.G13272 Trifolium pratense HOM05D005811 ORTHO05D007070 1.5e-07 60.8 65 52.3
TAR369G0215 Trochodendron aralioides HOM05D005811 ORTHO05D007070 1.9e-07 60.5 42 69.0
FvH4_3g38260 Fragaria vesca HOM05D005811 ORTHO05D007070 2.5e-07 60.1 65 50.8
FAN11G0366 Fragaria x ananassa HOM05D005811 ORTHO05D007070 2.5e-07 60.1 65 50.8
Medtr3g462990 Medicago truncatula HOM05D005811 ORTHO05D007070 2.5e-07 60.1 65 50.8
AL5G26310 Arabidopsis lyrata HOM05D005811 ORTHO05D007070 3.3e-07 59.7 45 66.7
Gohir.A03G049700 Gossypium hirsutum HOM05D005811 ORTHO05D007070 3.3e-07 59.7 65 49.2
Gohir.A05G089600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 3.3e-07 59.7 65 52.3
Gohir.D03G117600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 3.3e-07 59.7 45 60.0
Gohir.D05G090500 Gossypium hirsutum HOM05D005811 ORTHO05D007070 3.3e-07 59.7 65 52.3
Gorai.003G124000 Gossypium raimondii HOM05D005811 ORTHO05D007070 3.3e-07 59.7 45 60.0
Gorai.009G093000 Gossypium raimondii HOM05D005811 ORTHO05D007070 3.3e-07 59.7 65 52.3
Medtr5g069990 Medicago truncatula HOM05D005811 ORTHO05D007070 3.3e-07 59.7 65 52.3
Sp6g20560 Schrenkiella parvula HOM05D005811 ORTHO05D007070 4.3e-07 59.3 43 62.8
TWI75G0861 Tripterygium wilfordii HOM05D005811 ORTHO05D007070 4.3e-07 59.3 65 52.3
Aa31LG4G15980 Aethionema arabicum HOM05D005811 ORTHO05D007070 5.6e-07 58.9 42 66.7
BcaC04g19852 Brassica carinata HOM05D005811 ORTHO05D007070 5.6e-07 58.9 43 62.8
BcaC04g19853 Brassica carinata HOM05D005811 ORTHO05D007070 5.6e-07 58.9 43 62.8
A10p15470 Brassica napus HOM05D005811 ORTHO05D007070 5.6e-07 58.9 43 62.8
C09p51020 Brassica napus HOM05D005811 ORTHO05D007070 5.6e-07 58.9 43 62.8
BolC9t57959H Brassica oleracea HOM05D005811 ORTHO05D007070 5.6e-07 58.9 43 62.8
BraA10t43688Z Brassica rapa HOM05D005811 ORTHO05D007070 5.6e-07 58.9 43 62.8
FAN16G2097 Fragaria x ananassa HOM05D005811 ORTHO05D007070 7.3e-07 58.5 65 49.2
FAN25G1329 Fragaria x ananassa HOM05D005811 ORTHO05D007070 7.3e-07 58.5 65 49.2
LjContig00155g0018843 Lotus japonicus HOM05D005811 ORTHO05D007070 7.3e-07 58.5 65 55.4
MD11G1079700 Malus domestica HOM05D005811 ORTHO05D007070 7.3e-07 58.5 65 56.9
arahy.Tifrunner.gnm1.ann1.8DRC0W Arachis hypogaea HOM05D005811 ORTHO05D007070 9.5e-07 58.2 43 69.8
arahy.Tifrunner.gnm1.ann1.AMG8UC Arachis hypogaea HOM05D005811 ORTHO05D007070 9.5e-07 58.2 43 69.8
Thhalv10015099m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 9.5e-07 58.2 48 60.4
Glyma.11G176000 Glycine max HOM05D005811 ORTHO05D007070 9.5e-07 58.2 42 69.0
Ca_05589_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 1.2e-06 57.8 66 59.1
FAN21G0983 Fragaria x ananassa HOM05D005811 ORTHO05D007070 1.2e-06 57.8 65 49.2
Rhsim13G0071700 Rhododendron simsii HOM05D005811 ORTHO05D007070 1.2e-06 57.8 65 52.3
Ah.15g099770 Amaranthus hybridus HOM05D005811 ORTHO05D007070 1.6e-06 57.4 41 63.4
RcHm_v2.0_Chr5g0068741 Rosa chinensis HOM05D005811 ORTHO05D007070 1.6e-06 57.4 65 49.2
AT3G47070 Arabidopsis thaliana HOM05D005811 ORTHO05D007070 2.1e-06 57.0 45 62.2
Aqoxy2G00950 Aquilegia oxysepala HOM05D005811 ORTHO05D007070 3.6e-06 56.2 42 66.7
CDE02G0229 Ceratophyllum demersum HOM05D005811 ORTHO05D007070 6.1e-06 55.5 62 51.6
Psat2g059240 Pisum sativum HOM05D005811 ORTHO05D007070 6.1e-06 55.5 42 66.7


User provided reference genes

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