Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold43G16538 Striga asiatica HOM05D006055 ORTHO05D007480 1.3e-196 689.5 342 100.0
SGA_v2.0_scaffold116G32294 Striga asiatica HOM05D006055 ORTHO05D007480 2.9e-164 582.0 376 80.1
MSTRG.28152 Avicennia marina HOM05D006055 ORTHO05D007480 2.1e-162 575.9 340 84.1
Hma1.2p1_0009F.1_g005960 Hydrangea macrophylla HOM05D006055 ORTHO05D007480 1.2e-154 550.1 340 79.1
CSS0024076 Camellia sinensis var. sinensis HOM05D006055 ORTHO05D007480 8.0e-154 547.4 336 80.1
Duzib138G0472 Durio zibethinus HOM05D006055 ORTHO05D007480 1.1e-153 547.0 337 79.2
Migut.N01738 Erythranthe guttata HOM05D006055 ORTHO05D007480 1.1e-153 547.0 312 86.5
Actinidia12146 Actinidia chinensis HOM05D006055 ORTHO05D007480 1.8e-153 546.2 328 82.3
Nitab4.5_0013736g0020 Nicotiana tabacum HOM05D006055 ORTHO05D007480 8.9e-153 543.9 340 79.1
Sopen01g036070 Solanum pennellii HOM05D006055 ORTHO05D007480 1.2e-152 543.5 340 78.8
Potri.014G047300 Populus trichocarpa HOM05D006055 ORTHO05D007480 2.0e-152 542.7 339 79.6
Thecc.01G394500 Theobroma cacao HOM05D006055 ORTHO05D007480 2.6e-152 542.3 339 79.9
QL04p030364 Quercus lobata HOM05D006055 ORTHO05D007480 3.4e-152 542.0 337 78.6
Nitab4.5_0000920g0150 Nicotiana tabacum HOM05D006055 ORTHO05D007480 4.4e-152 541.6 340 79.1
Solyc01g090280.4 Solanum lycopersicum HOM05D006055 ORTHO05D007480 4.4e-152 541.6 340 78.8
COL.COLO4_12412 Corchorus olitorius HOM05D006055 ORTHO05D007480 5.8e-152 541.2 339 79.6
Manes.05G054600 Manihot esculenta HOM05D006055 ORTHO05D007480 1.3e-151 540.0 338 79.0
Ciclev10021096m.g Citrus clementina HOM05D006055 ORTHO05D007480 2.9e-151 538.9 330 80.6
TWI14G0600 Tripterygium wilfordii HOM05D006055 ORTHO05D007480 4.9e-151 538.1 334 78.7
CAN.G1473.12 Capsicum annuum HOM05D006055 ORTHO05D007480 2.4e-150 535.8 343 77.6
GSVIVG01018274001 Vitis vinifera HOM05D006055 ORTHO05D007480 2.4e-150 535.8 328 79.0
CANSAT21G1800 Cannabis sativa HOM05D006055 ORTHO05D007480 4.1e-150 535.0 324 81.2
Gohir.A08G029400 Gossypium hirsutum HOM05D006055 ORTHO05D007480 7.0e-150 534.3 331 79.2
PGR004G2446 Punica granatum HOM05D006055 ORTHO05D007480 1.6e-149 533.1 338 77.5
CANSAT21G1956 Cannabis sativa HOM05D006055 ORTHO05D007480 2.7e-149 532.3 324 80.9
Prupe.2G131200 Prunus persica HOM05D006055 ORTHO05D007480 3.5e-149 531.9 341 76.5
CiPaw.13G026500 Carya illinoinensis HOM05D006055 ORTHO05D007480 4.6e-149 531.6 341 77.7
Eucgr.D01230 Eucalyptus grandis HOM05D006055 ORTHO05D007480 7.8e-149 530.8 324 79.6
FAN01G2488 Fragaria x ananassa HOM05D006055 ORTHO05D007480 3.0e-148 528.9 348 75.6
Sed0027680 Sechium edule HOM05D006055 ORTHO05D007480 6.6e-148 527.7 338 76.6
Cpa.g.sc101.4 Carica papaya HOM05D006055 ORTHO05D007480 1.1e-147 526.9 331 78.9
HanXRQChr13g0423211 Helianthus annuus HOM05D006055 ORTHO05D007480 5.6e-147 524.6 336 75.3
Sabra14G0034300 Salix brachista HOM05D006055 ORTHO05D007480 5.6e-147 524.6 338 78.1
CARHR000230 Cardamine hirsuta HOM05D006055 ORTHO05D007480 1.6e-146 523.1 330 77.6
Gohir.D08G040100 Gossypium hirsutum HOM05D006055 ORTHO05D007480 3.6e-146 521.9 372 71.0
Lj1g0005705 Lotus japonicus HOM05D006055 ORTHO05D007480 3.6e-146 521.9 338 76.9
FAN10G0847 Fragaria x ananassa HOM05D006055 ORTHO05D007480 6.2e-146 521.2 348 74.7
arahy.Tifrunner.gnm1.ann1.C7FV9J Arachis hypogaea HOM05D006055 ORTHO05D007480 8.1e-146 520.8 348 73.9
arahy.Tifrunner.gnm1.ann1.JP1X2J Arachis hypogaea HOM05D006055 ORTHO05D007480 8.1e-146 520.8 348 73.9
TAR375G0976 Trochodendron aralioides HOM05D006055 ORTHO05D007480 1.1e-145 520.4 340 75.9
MD07G1108400 Malus domestica HOM05D006055 ORTHO05D007480 1.4e-145 520.0 321 79.8
Rhsim07G0035700 Rhododendron simsii HOM05D006055 ORTHO05D007480 1.4e-145 520.0 347 75.5
Peaxi162Scf00475g00522 Petunia axillaris HOM05D006055 ORTHO05D007480 3.1e-145 518.8 315 81.6
PGR144G0002 Punica granatum HOM05D006055 ORTHO05D007480 4.0e-145 518.5 325 78.8
MELO3C022277.2 Cucumis melo HOM05D006055 ORTHO05D007480 5.2e-145 518.1 332 76.5
Atru.chr5.130 Acer truncatum HOM05D006055 ORTHO05D007480 8.9e-145 517.3 322 78.0
Gorai.004G039000 Gossypium raimondii HOM05D006055 ORTHO05D007480 8.9e-145 517.3 373 70.5
FvH4_7g10160 Fragaria vesca HOM05D006055 ORTHO05D007480 1.2e-144 516.9 331 77.0
FAN06G3912 Fragaria x ananassa HOM05D006055 ORTHO05D007480 2.0e-144 516.2 338 75.7
RcHm_v2.0_Chr1g0347871 Rosa chinensis HOM05D006055 ORTHO05D007480 2.0e-144 516.2 331 76.4
vmacro13494 Vaccinium macrocarpon HOM05D006055 ORTHO05D007480 2.0e-144 516.2 306 82.7
CsaV3_6G008610 Cucumis sativus L. HOM05D006055 ORTHO05D007480 3.4e-144 515.4 332 76.5
AL1G10130 Arabidopsis lyrata HOM05D006055 ORTHO05D007480 9.9e-144 513.8 324 77.8
Dinv43619 Davidia involucrata HOM05D006055 ORTHO05D007480 1.3e-143 513.5 306 82.7
Psat0s3739g0040 Pisum sativum HOM05D006055 ORTHO05D007480 3.7e-143 511.9 330 76.4
Nn1g00856 Nelumbo nucifera HOM05D006055 ORTHO05D007480 4.9e-143 511.5 339 75.8
BcaC07g42339 Brassica carinata HOM05D006055 ORTHO05D007480 6.4e-143 511.1 323 77.4
Thhalv10008126m.g Eutrema salsugineum HOM05D006055 ORTHO05D007480 8.3e-143 510.8 341 75.1
Lalb_Chr13g0290591 Lupinus albus HOM05D006055 ORTHO05D007480 1.1e-142 510.4 328 76.8
ECA240G2571 Erigeron canadensis HOM05D006055 ORTHO05D007480 1.4e-142 510.0 336 75.9
Medtr7g081715 Medicago truncatula HOM05D006055 ORTHO05D007480 2.4e-142 509.2 334 76.0
FAN10G2268 Fragaria x ananassa HOM05D006055 ORTHO05D007480 4.1e-142 508.4 371 70.1
PSO063G7218 Papaver somniferum HOM05D006055 ORTHO05D007480 4.1e-142 508.4 327 78.0
Sp1g00170 Schrenkiella parvula HOM05D006055 ORTHO05D007480 5.4e-142 508.1 330 76.1
PSO832G3098 Papaver somniferum HOM05D006055 ORTHO05D007480 1.2e-141 506.9 327 78.0
Glyma.13G187100 Glycine max HOM05D006055 ORTHO05D007480 1.6e-141 506.5 336 74.7
Ca_08070_v3 Cicer arietinum L. HOM05D006055 ORTHO05D007480 2.1e-141 506.1 328 75.6
Glyma.18G252000 Glycine max HOM05D006055 ORTHO05D007480 2.1e-141 506.1 321 78.2
TPR.G14105 Trifolium pratense HOM05D006055 ORTHO05D007480 2.1e-141 506.1 339 73.7
CSS0048269 Camellia sinensis var. sinensis HOM05D006055 ORTHO05D007480 3.5e-141 505.4 334 75.4
SalBow5G1596 Salvia bowleyana HOM05D006055 ORTHO05D007480 6.6e-140 501.1 387 68.0
BcaC07g42437 Brassica carinata HOM05D006055 ORTHO05D007480 8.6e-140 500.7 325 76.6
AT1G02100 Arabidopsis thaliana HOM05D006055 ORTHO05D007480 2.5e-139 499.2 324 76.2
Cc02_g25090 Coffea canephora HOM05D006055 ORTHO05D007480 5.6e-139 498.0 308 81.2
Carub.0001s0012 Capsella rubella HOM05D006055 ORTHO05D007480 7.3e-139 497.7 325 76.6
CDE06G0143 Ceratophyllum demersum HOM05D006055 ORTHO05D007480 9.5e-139 497.3 326 76.1
FAN03G3321 Fragaria x ananassa HOM05D006055 ORTHO05D007480 1.2e-133 480.3 333 71.2
Ah.16g103830 Amaranthus hybridus HOM05D006055 ORTHO05D007480 1.0e-132 477.2 334 72.2
Duzib133G1573 Durio zibethinus HOM05D006055 ORTHO05D007480 3.9e-132 475.3 305 79.0
A09p69350 Brassica napus HOM05D006055 ORTHO05D007480 5.1e-132 474.9 345 70.4
BolC8t52925H Brassica oleracea HOM05D006055 ORTHO05D007480 5.1e-132 474.9 345 70.4
SalBow5G4451 Salvia bowleyana HOM05D006055 ORTHO05D007480 1.9e-131 473.0 397 64.7
Cfa011074 Carpinus fangiana HOM05D006055 ORTHO05D007480 3.3e-131 472.2 291 80.4
BraA09t42280Z Brassica rapa HOM05D006055 ORTHO05D007480 4.7e-130 468.4 357 68.3
FAN06G2084 Fragaria x ananassa HOM05D006055 ORTHO05D007480 1.8e-129 466.5 364 66.2
Lsat_1_v5_gn_3_127241 Lactuca sativa HOM05D006055 ORTHO05D007480 4.0e-129 465.3 332 69.0
Oeu011253.1 Olea europaea HOM05D006055 ORTHO05D007480 5.2e-129 464.9 283 80.9
Lj9C557T10 Lonicera japonica HOM05D006055 ORTHO05D007480 5.8e-128 461.5 338 70.7
Aqoxy7G00862 Aquilegia oxysepala HOM05D006055 ORTHO05D007480 9.9e-128 460.7 299 74.9
Phvul.011G190400 Phaseolus vulgaris HOM05D006055 ORTHO05D007480 9.9e-128 460.7 331 71.0
Hund17088 Selenicereus undatus HOM05D006055 ORTHO05D007480 1.7e-127 459.9 331 68.9
Os06g0140100 Oryza sativa ssp. japonica HOM05D006055 ORTHO05D007480 5.4e-126 454.9 314 71.0
AUR62013746 Chenopodium quinoa HOM05D006055 ORTHO05D007480 5.1e-124 448.4 289 76.8
Aa31LG1G11510 Aethionema arabicum HOM05D006055 ORTHO05D007480 1.6e-122 443.4 288 77.1
Hma1.2p1_0009F.1_g005970 Hydrangea macrophylla HOM05D006055 ORTHO05D007480 1.6e-122 443.4 268 79.9
AUR62023405 Chenopodium quinoa HOM05D006055 ORTHO05D007480 5.8e-120 434.9 338 66.3
ATR0057G026 Amborella trichopoda HOM05D006055 ORTHO05D007480 5.1e-116 421.8 304 68.4
Sc02g0003100 Simmondsia chinensis HOM05D006055 ORTHO05D007480 8.7e-116 421.0 304 68.8
Glyma.09G242700 Glycine max HOM05D006055 ORTHO05D007480 1.5e-115 420.2 282 75.2
MD02G1211800 Malus domestica HOM05D006055 ORTHO05D007480 3.7e-114 415.6 263 77.2
EL10Ac1g00759 Beta vulgaris HOM05D006055 ORTHO05D007480 1.5e-112 410.2 287 71.8
AagrBONN_evm.TU.Sc2ySwM_344.4855 Anthoceros agrestis HOM05D006055 ORTHO05D007480 2.1e-109 399.8 332 59.0
Mapoly0013s0063 Marchantia polymorpha HOM05D006055 ORTHO05D007480 6.7e-108 394.8 317 59.9
MBI04_g33722_MAGBIO Magnolia biondii HOM05D006055 ORTHO05D007480 3.3e-107 392.5 337 60.2
Zm00001eb270250 Zea mays HOM05D006055 ORTHO05D007480 2.2e-103 379.8 292 64.0
TWI14G1276 Tripterygium wilfordii HOM05D006055 ORTHO05D007480 2.9e-103 379.4 234 80.8
Pp3c6_20710 Physcomitrium patens HOM05D006055 ORTHO05D007480 9.3e-102 374.4 323 57.6
Haze_02842 Corylus avellana HOM05D006055 ORTHO05D007480 3.5e-101 372.5 283 68.2
unitig_578.g16712 Utricularia gibba HOM05D006055 ORTHO05D007480 1.4e-97 360.5 233 75.5
ClCG06G002510 Citrullus lanatus HOM05D006055 ORTHO05D007480 4.1e-97 359.0 287 65.5
SMO169G0267 Selaginella moellendorffii HOM05D006055 ORTHO05D007480 2.6e-96 356.3 330 57.0
C08p54160 Brassica napus HOM05D006055 ORTHO05D007480 1.0e-92 344.4 246 69.1
CBR_g29813 Chara braunii HOM05D006055 ORTHO05D007480 3.7e-90 335.9 315 52.4
SEGI_37557 Sequoiadendron giganteum HOM05D006055 ORTHO05D007480 4.7e-85 318.9 233 65.7
CDE06G0088 Ceratophyllum demersum HOM05D006055 ORTHO05D007480 5.1e-84 315.5 221 71.5
Cre04.g229350 Chlamydomonas reinhardtii HOM05D006055 ORTHO05D007480 4.1e-73 279.3 364 43.1
ECA240G0951 Erigeron canadensis HOM05D006055 ORTHO05D007480 4.5e-72 275.8 229 63.8
Actinidia32500 Actinidia chinensis HOM05D006055 ORTHO05D007480 2.5e-54 216.9 181 63.5
VMungo1127G0075 Vigna mungo HOM05D006055 ORTHO05D007480 1.8e-52 210.7 150 73.3
Gohir.A09G116600 Gossypium hirsutum HOM05D006055 ORTHO05D007480 9.2e-49 198.4 143 68.5
MCO09G792 Micromonas commoda HOM05D006055 ORTHO05D007480 7.8e-48 195.3 332 36.1
SHI13615 Sapria himalayana HOM05D006055 ORTHO05D007480 3.4e-43 179.9 107 75.7
HPP92_022088 Vanilla planifolia HOM05D006055 ORTHO05D007480 1.2e-40 171.4 129 67.4
PRCOL_00000228 Prasinoderma coloniale HOM05D006055 ORTHO05D007480 8.9e-36 155.2 282 36.5
Gohir.D08G159633 Gossypium hirsutum HOM05D006055 ORTHO05D007480 4.4e-35 152.9 97 77.3
Zm00001eb438620 Zea mays HOM05D006055 ORTHO05D007480 4.6e-16 89.7 82 52.4
SHI13613 Sapria himalayana HOM05D006055 ORTHO05D007480 3.9e-15 86.7 70 62.9
Phvul.008G046701 Phaseolus vulgaris HOM05D006055 ORTHO05D007480 1.1e-12 78.6 50 80.0
MD02G1212000 Malus domestica HOM05D006055 ORTHO05D007480 3.8e-10 70.1 40 82.5


User provided reference genes

Program Settings