Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 6.3e-46 187.2 102 100.0
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 1.2e-28 129.8 102 69.6
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 2.1e-25 119.0 101 62.4
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.4e-24 116.3 99 65.7
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.8e-24 115.9 99 65.7
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 4.1e-21 104.8 97 56.7
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 5.4e-21 104.4 102 55.9
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 7.0e-21 104.0 102 54.9
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 9.2e-21 103.6 102 54.9
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 1.2e-20 103.2 103 52.4
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 1.6e-20 102.8 102 54.9
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 1.6e-20 102.8 97 52.6
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 3.5e-20 101.7 88 55.7
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 5.9e-20 100.9 100 55.0
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 7.8e-20 100.5 73 69.9
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 1.0e-19 100.1 88 63.6
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 1.0e-19 100.1 97 50.5
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 1.7e-19 99.4 91 57.1
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 2.3e-19 99.0 92 55.4
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.9e-19 98.6 111 49.5
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 6.6e-19 97.4 73 71.2
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 8.6e-19 97.1 98 53.1
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 1.5e-18 96.3 90 50.0
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 4.3e-18 94.7 80 57.5
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 7.3e-18 94.0 96 53.1
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 1.6e-17 92.8 89 53.9
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 1.6e-17 92.8 97 47.4
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 2.8e-17 92.0 100 53.0
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 2.8e-17 92.0 82 53.7
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 3.6e-17 91.7 83 50.6
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 6.1e-17 90.9 96 47.9
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 8.0e-17 90.5 97 46.4
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 8.0e-17 90.5 78 59.0
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 1.0e-16 90.1 73 63.0
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 1.4e-16 89.7 100 49.0
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 3.0e-16 88.6 81 54.3
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 3.0e-16 88.6 77 55.8
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 3.0e-16 88.6 106 47.2
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 4.0e-16 88.2 79 54.4
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 4.0e-16 88.2 79 54.4
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 5.2e-16 87.8 103 47.6
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 8.9e-16 87.0 92 51.1
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 1.2e-15 86.7 92 46.7
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 1.2e-15 86.7 92 47.8
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 1.2e-15 86.7 73 63.0
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 1.5e-15 86.3 101 47.5
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 1.5e-15 86.3 102 44.1
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 2.0e-15 85.9 101 45.5
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 2.0e-15 85.9 73 60.3
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 2.0e-15 85.9 73 56.2
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 2.6e-15 85.5 101 49.5
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 2.6e-15 85.5 92 46.7
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 3.4e-15 85.1 86 47.7
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 4.4e-15 84.7 73 54.8
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 5.8e-15 84.3 102 50.0
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 7.5e-15 84.0 73 56.2
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 9.8e-15 83.6 74 60.8
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 1.7e-14 82.8 98 48.0
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 2.2e-14 82.4 92 46.7
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 2.9e-14 82.0 73 53.4
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 3.7e-14 81.6 87 49.4
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 3.7e-14 81.6 87 49.4
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.7e-14 81.6 105 43.8
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 3.7e-14 81.6 105 43.8
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 3.7e-14 81.6 91 50.5
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 3.7e-14 81.6 72 61.1
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.9e-14 81.3 105 43.8
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.9e-14 81.3 105 43.8
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 6.4e-14 80.9 82 48.8
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 1.4e-13 79.7 105 42.9
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.4e-13 79.7 105 42.9
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.4e-13 79.7 105 42.9
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 2.4e-13 79.0 100 44.0
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 3.2e-13 78.6 86 52.3
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 4.1e-13 78.2 87 47.1
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 4.1e-13 78.2 73 54.8
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 4.1e-13 78.2 79 49.4
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 7.0e-13 77.4 73 54.8
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 1.2e-12 76.6 83 49.4
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 6.0e-12 74.3 80 52.5
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 1.0e-11 73.6 79 50.6
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.3e-11 73.2 73 54.8
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.3e-11 73.2 73 54.8
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 1.7e-11 72.8 125 35.2
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 1.7e-11 72.8 77 50.6
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 3.0e-11 72.0 86 46.5
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 3.9e-11 71.6 75 50.7
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 5.0e-11 71.2 92 45.7
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 6.6e-11 70.9 76 50.0
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 1.1e-10 70.1 76 48.7
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 1.9e-10 69.3 61 54.1
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 3.3e-10 68.6 77 49.4
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 4.3e-10 68.2 77 49.4
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 4.3e-10 68.2 78 50.0
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 9.5e-10 67.0 54 61.1
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 9.5e-10 67.0 54 61.1
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.2e-09 66.6 90 42.2
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 1.6e-09 66.2 54 61.1
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 2.1e-09 65.9 88 38.6
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 2.1e-09 65.9 79 48.1
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 1.4e-08 63.2 83 44.6
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 1.8e-08 62.8 52 59.6
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 2.3e-08 62.4 77 48.1
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 4.0e-08 61.6 54 61.1
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 6.8e-08 60.8 61 47.5
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 8.9e-08 60.5 66 45.5
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 3.4e-07 58.5 50 58.0
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 7.5e-07 57.4 70 50.0
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 7.5e-07 57.4 70 50.0


User provided reference genes

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