Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold43G16508 Striga asiatica HOM05D001320 ORTHO05D403139 7.0e-83 310.5 144 100.0
MSTRG.20730 Avicennia marina HOM05D001320 ORTHO05D002136 6.4e-12 74.7 62 54.8
Rhsim07G0030900 Rhododendron simsii HOM05D001320 ORTHO05D002136 1.9e-11 73.2 62 50.0
Actinidia12187 Actinidia chinensis HOM05D001320 ORTHO05D002136 7.1e-11 71.2 62 53.2
ECA236G0390 Erigeron canadensis HOM05D001320 ORTHO05D002136 7.1e-11 71.2 78 46.2
Lj7P535T17 Lonicera japonica HOM05D001320 ORTHO05D002136 7.1e-11 71.2 62 51.6
Lsat_1_v5_gn_7_9261 Lactuca sativa HOM05D001320 ORTHO05D002136 9.3e-11 70.9 75 48.0
Dinv43675 Davidia involucrata HOM05D001320 ORTHO05D002136 1.2e-10 70.5 62 51.6
CSS0048675 Camellia sinensis var. sinensis HOM05D001320 ORTHO05D002136 1.6e-10 70.1 61 52.5
Cc02_g24390 Coffea canephora HOM05D001320 ORTHO05D002136 1.6e-10 70.1 65 47.7
Migut.B01597 Erythranthe guttata HOM05D001320 ORTHO05D002136 1.6e-10 70.1 75 48.0
Oeu000018.2 Olea europaea HOM05D001320 ORTHO05D002136 2.7e-10 69.3 61 49.2
CAN.G1469.15 Capsicum annuum HOM05D001320 ORTHO05D002136 3.5e-10 68.9 67 44.8
HanXRQChr06g0169101 Helianthus annuus HOM05D001320 ORTHO05D002136 3.5e-10 68.9 78 44.9
Peaxi162Scf00803g00003 Petunia axillaris HOM05D001320 ORTHO05D002136 3.5e-10 68.9 67 44.8
PGSC0003DMG400025973 Solanum tuberosum HOM05D001320 ORTHO05D002136 3.5e-10 68.9 67 44.8
Nitab4.5_0000859g0260 Nicotiana tabacum HOM05D001320 ORTHO05D002136 6.0e-10 68.2 67 44.8
SalBow5G2653 Salvia bowleyana HOM05D001320 ORTHO05D002136 6.0e-10 68.2 62 48.4
SalBow5G3328 Salvia bowleyana HOM05D001320 ORTHO05D002136 6.0e-10 68.2 62 48.4
CSS0037771 Camellia sinensis var. sinensis HOM05D001320 ORTHO05D002136 7.9e-10 67.8 61 49.2
Nitab4.5_0011278g0010 Nicotiana tabacum HOM05D001320 ORTHO05D002136 7.9e-10 67.8 67 44.8
Solyc01g090950.4 Solanum lycopersicum HOM05D001320 ORTHO05D002136 7.9e-10 67.8 67 43.3
Sopen01g036680 Solanum pennellii HOM05D001320 ORTHO05D002136 7.9e-10 67.8 67 43.3
CSS0017534 Camellia sinensis var. sinensis HOM05D001320 ORTHO05D002136 1.3e-09 67.0 62 46.8
Actinidia18728 Actinidia chinensis HOM05D001320 ORTHO05D002136 1.8e-09 66.6 62 50.0
CSS0004937 Camellia sinensis var. sinensis HOM05D001320 ORTHO05D002136 2.3e-09 66.2 62 46.8
Actinidia02120 Actinidia chinensis HOM05D001320 ORTHO05D002136 3.0e-09 65.9 62 48.4
Oeu004549.1 Olea europaea HOM05D001320 ORTHO05D002136 3.0e-09 65.9 62 48.4
unitig_22.g5387 Utricularia gibba HOM05D001320 ORTHO05D002136 3.0e-09 65.9 62 40.3
unitig_8.g3828 Utricularia gibba HOM05D001320 ORTHO05D002136 3.0e-09 65.9 62 43.5
Oeu064173.2 Olea europaea HOM05D001320 ORTHO05D002136 3.9e-09 65.5 62 48.4
Actinidia14439 Actinidia chinensis HOM05D001320 ORTHO05D002136 8.7e-09 64.3 62 46.8
MSTRG.17163 Avicennia marina HOM05D001320 ORTHO05D002136 8.7e-09 64.3 62 48.4
Potri.001G122800 Populus trichocarpa HOM05D001320 ORTHO05D002136 8.7e-09 64.3 75 44.0
SGA_v2.0_scaffold153G36971 Striga asiatica HOM05D001320 ORTHO05D002136 1.1e-08 63.9 62 46.8
SGA_v2.0_scaffold399G50791 Striga asiatica HOM05D001320 ORTHO05D002136 1.1e-08 63.9 65 46.2
Ciclev10018916m.g Citrus clementina HOM05D001320 ORTHO05D002136 1.5e-08 63.5 62 45.2
Ciclev10019083m.g Citrus clementina HOM05D001320 ORTHO05D002136 2.5e-08 62.8 62 43.5
Rhsim01G0150800 Rhododendron simsii HOM05D001320 ORTHO05D002136 2.5e-08 62.8 62 45.2
RcHm_v2.0_Chr1g0349141 Rosa chinensis HOM05D001320 ORTHO05D002136 3.3e-08 62.4 64 45.3
unitig_0.g1308 Utricularia gibba HOM05D001320 ORTHO05D002136 3.3e-08 62.4 62 38.7
Dinv39128 Davidia involucrata HOM05D001320 ORTHO05D002136 4.3e-08 62.0 63 46.0
vmacro13439 Vaccinium macrocarpon HOM05D001320 ORTHO05D002136 4.3e-08 62.0 56 46.4
QL04p038841 Quercus lobata HOM05D001320 ORTHO05D002136 7.4e-08 61.2 62 45.2
GSVIVG01001308001 Vitis vinifera HOM05D001320 ORTHO05D002136 7.4e-08 61.2 63 44.4
Atru.chr5.254 Acer truncatum HOM05D001320 ORTHO05D002136 9.6e-08 60.8 62 45.2
Ciclev10019094m.g Citrus clementina HOM05D001320 ORTHO05D002136 9.6e-08 60.8 62 40.3
Cc08_g12670 Coffea canephora HOM05D001320 ORTHO05D002136 9.6e-08 60.8 62 45.2
Eucgr.E01509 Eucalyptus grandis HOM05D001320 ORTHO05D002136 9.6e-08 60.8 67 40.3
SHI09608 Sapria himalayana HOM05D001320 ORTHO05D002136 9.6e-08 60.8 76 38.2
TWI59G0954 Tripterygium wilfordii HOM05D001320 ORTHO05D002136 9.6e-08 60.8 62 40.3
GSVIVG01027680001 Vitis vinifera HOM05D001320 ORTHO05D002136 9.6e-08 60.8 62 45.2
Atru.chr5.256 Acer truncatum HOM05D001320 ORTHO05D002136 1.3e-07 60.5 62 43.5
Cpa.g.sc29.139 Carica papaya HOM05D001320 ORTHO05D002136 1.3e-07 60.5 62 45.2
QL12p012621 Quercus lobata HOM05D001320 ORTHO05D002136 1.3e-07 60.5 62 46.8
Sabra01G0094600 Salix brachista HOM05D001320 ORTHO05D002136 1.3e-07 60.5 75 42.7
Atru.chr9.1333 Acer truncatum HOM05D001320 ORTHO05D002136 1.6e-07 60.1 62 45.2
Gohir.D12G222300 Gossypium hirsutum HOM05D001320 ORTHO05D002136 1.6e-07 60.1 62 46.8
Sed0003392 Sechium edule HOM05D001320 ORTHO05D002136 1.6e-07 60.1 62 43.5
TWI23G0829 Tripterygium wilfordii HOM05D001320 ORTHO05D002136 1.6e-07 60.1 62 40.3
CsaV3_3G002800 Cucumis sativus L. HOM05D001320 ORTHO05D002136 2.1e-07 59.7 62 43.5
Gorai.004G200600 Gossypium raimondii HOM05D001320 ORTHO05D002136 2.1e-07 59.7 75 42.7
Oeu032183.1 Olea europaea HOM05D001320 ORTHO05D002136 2.1e-07 59.7 62 40.3
Prupe.2G138400 Prunus persica HOM05D001320 ORTHO05D002136 2.1e-07 59.7 62 41.9
Thecc.03G253700 Theobroma cacao HOM05D001320 ORTHO05D002136 2.1e-07 59.7 62 45.2
Cfa011171 Carpinus fangiana HOM05D001320 ORTHO05D002136 2.8e-07 59.3 62 41.9
ClCG10G002760 Citrullus lanatus HOM05D001320 ORTHO05D002136 2.8e-07 59.3 62 43.5
MELO3C013947.2 Cucumis melo HOM05D001320 ORTHO05D002136 2.8e-07 59.3 62 43.5
FvH4_5g00020 Fragaria vesca HOM05D001320 ORTHO05D002136 2.8e-07 59.3 62 43.5
FAN08G3518 Fragaria x ananassa HOM05D001320 ORTHO05D002136 2.8e-07 59.3 62 43.5
FAN13G0128 Fragaria x ananassa HOM05D001320 ORTHO05D002136 2.8e-07 59.3 62 43.5
FAN18G2925 Fragaria x ananassa HOM05D001320 ORTHO05D002136 2.8e-07 59.3 62 43.5
MD02G1210200 Malus domestica HOM05D001320 ORTHO05D002136 2.8e-07 59.3 62 41.9
Potri.003G110800 Populus trichocarpa HOM05D001320 ORTHO05D002136 2.8e-07 59.3 62 43.5
QL04p038785 Quercus lobata HOM05D001320 ORTHO05D002136 2.8e-07 59.3 62 43.5
RcHm_v2.0_Chr7g0202931 Rosa chinensis HOM05D001320 ORTHO05D002136 2.8e-07 59.3 62 43.5
TWI14G0097 Tripterygium wilfordii HOM05D001320 ORTHO05D002136 2.8e-07 59.3 62 40.3
CANSAT21G1072 Cannabis sativa HOM05D001320 ORTHO05D002136 3.7e-07 58.9 62 43.5
CiPaw.13G032700 Carya illinoinensis HOM05D001320 ORTHO05D002136 3.7e-07 58.9 62 38.7
Haze_07886 Corylus avellana HOM05D001320 ORTHO05D002136 3.7e-07 58.9 63 42.9
Duzib133G0024 Durio zibethinus HOM05D001320 ORTHO05D002136 3.7e-07 58.9 62 41.9
FAN04G0481 Fragaria x ananassa HOM05D001320 ORTHO05D002136 3.7e-07 58.9 62 43.5
Gohir.A08G172200 Gossypium hirsutum HOM05D001320 ORTHO05D002136 3.7e-07 58.9 75 42.7
Hma1.2p1_0916F.1_g236500 Hydrangea macrophylla HOM05D001320 ORTHO05D002136 3.7e-07 58.9 62 45.2
Lj3g0015276 Lotus japonicus HOM05D001320 ORTHO05D002136 3.7e-07 58.9 75 40.0
MD04G1088100 Malus domestica HOM05D001320 ORTHO05D002136 3.7e-07 58.9 63 44.4
MD07G1115800 Malus domestica HOM05D001320 ORTHO05D002136 3.7e-07 58.9 62 41.9
Prupe.5G072300 Prunus persica HOM05D001320 ORTHO05D002136 3.7e-07 58.9 62 45.2
Duzib068G0558 Durio zibethinus HOM05D001320 ORTHO05D002136 4.8e-07 58.5 62 43.5
Gohir.A12G220100 Gossypium hirsutum HOM05D001320 ORTHO05D002136 4.8e-07 58.5 62 45.2
Gorai.008G238300 Gossypium raimondii HOM05D001320 ORTHO05D002136 4.8e-07 58.5 62 45.2
Peaxi162Scf00002g00162 Petunia axillaris HOM05D001320 ORTHO05D002136 4.8e-07 58.5 62 41.9
unitig_76.g29080 Utricularia gibba HOM05D001320 ORTHO05D002136 4.8e-07 58.5 62 40.3
Atru.chr9.1337 Acer truncatum HOM05D001320 ORTHO05D002136 6.2e-07 58.2 62 45.2
Cpa.g.sc49.157 Carica papaya HOM05D001320 ORTHO05D002136 6.2e-07 58.2 62 43.5
CiPaw.11G152700 Carya illinoinensis HOM05D001320 ORTHO05D002136 6.2e-07 58.2 63 44.4
AUR62007503 Chenopodium quinoa HOM05D001320 ORTHO05D002136 6.2e-07 58.2 62 45.2
AUR62039956 Chenopodium quinoa HOM05D001320 ORTHO05D002136 6.2e-07 58.2 62 45.2
Haze_02678 Corylus avellana HOM05D001320 ORTHO05D002136 6.2e-07 58.2 62 40.3
Duzib138G0867 Durio zibethinus HOM05D001320 ORTHO05D002136 6.2e-07 58.2 62 41.9
ECA240G1936 Erigeron canadensis HOM05D001320 ORTHO05D002136 6.2e-07 58.2 62 41.9
Glyma.01G136300 Glycine max HOM05D001320 ORTHO05D002136 6.2e-07 58.2 75 40.0
Gohir.D08G190500 Gossypium hirsutum HOM05D001320 ORTHO05D002136 6.2e-07 58.2 75 42.7
MBI04_g41910_MAGBIO Magnolia biondii HOM05D001320 ORTHO05D002136 6.2e-07 58.2 62 43.5
Nitab4.5_0000312g0120 Nicotiana tabacum HOM05D001320 ORTHO05D002136 6.2e-07 58.2 62 41.9
PGSC0003DMG400004752 Solanum tuberosum HOM05D001320 ORTHO05D002136 6.2e-07 58.2 62 41.9
VMungo0331G1322 Vigna mungo HOM05D001320 ORTHO05D002136 6.2e-07 58.2 75 40.0
EL10Ac5g13052 Beta vulgaris HOM05D001320 ORTHO05D002136 8.1e-07 57.8 62 43.5
CSS0000701 Camellia sinensis var. sinensis HOM05D001320 ORTHO05D002136 8.1e-07 57.8 62 41.9
CSS0010789 Camellia sinensis var. sinensis HOM05D001320 ORTHO05D002136 8.1e-07 57.8 62 41.9
Cfa012742 Carpinus fangiana HOM05D001320 ORTHO05D002136 8.1e-07 57.8 63 41.3
Lsat_1_v5_gn_6_3180 Lactuca sativa HOM05D001320 ORTHO05D002136 8.1e-07 57.8 62 45.2
Lj2P215T12 Lonicera japonica HOM05D001320 ORTHO05D002136 8.1e-07 57.8 62 43.5
COL.COLO4_12492 Corchorus olitorius HOM05D001320 ORTHO05D002136 1.1e-06 57.4 62 41.9
Dinv21621 Davidia involucrata HOM05D001320 ORTHO05D002136 1.1e-06 57.4 62 46.8
Glyma.03G031800 Glycine max HOM05D001320 ORTHO05D002136 1.1e-06 57.4 75 40.0
HanXRQChr13g0396051 Helianthus annuus HOM05D001320 ORTHO05D002136 1.1e-06 57.4 62 41.9
Nitab4.5_0012398g0020 Nicotiana tabacum HOM05D001320 ORTHO05D002136 1.1e-06 57.4 62 41.9
Sabra14G0044400 Salix brachista HOM05D001320 ORTHO05D002136 1.1e-06 57.4 62 40.3
Hund11591 Selenicereus undatus HOM05D001320 ORTHO05D002136 1.1e-06 57.4 63 39.7
TAR375G0243 Trochodendron aralioides HOM05D001320 ORTHO05D002136 1.1e-06 57.4 62 41.9
CAN.G1218.13 Capsicum annuum HOM05D001320 ORTHO05D002136 1.4e-06 57.0 62 38.7
Duzib084G0725 Durio zibethinus HOM05D001320 ORTHO05D002136 1.4e-06 57.0 62 40.3
ECA233G0712 Erigeron canadensis HOM05D001320 ORTHO05D002136 1.4e-06 57.0 62 41.9
Gorai.008G106100 Gossypium raimondii HOM05D001320 ORTHO05D002136 1.4e-06 57.0 62 41.9
Hma1.2p1_2055F.1_g312770 Hydrangea macrophylla HOM05D001320 ORTHO05D002136 1.4e-06 57.0 62 43.5
Gohir.A03G008700 Gossypium hirsutum HOM05D001320 ORTHO05D002136 1.8e-06 56.6 62 43.5
Potri.014G060200 Populus trichocarpa HOM05D001320 ORTHO05D002136 1.8e-06 56.6 62 40.3
Sc07g0009330 Simmondsia chinensis HOM05D001320 ORTHO05D002136 1.8e-06 56.6 62 45.2
HPP92_022314 Vanilla planifolia HOM05D001320 ORTHO05D002136 1.8e-06 56.6 70 38.6
HPP92_022324 Vanilla planifolia HOM05D001320 ORTHO05D002136 1.8e-06 56.6 70 38.6
CDE12G0263 Ceratophyllum demersum HOM05D001320 ORTHO05D002136 2.4e-06 56.2 73 37.0
Gohir.A12G094700 Gossypium hirsutum HOM05D001320 ORTHO05D002136 2.4e-06 56.2 62 41.9
Gohir.D03G162200 Gossypium hirsutum HOM05D001320 ORTHO05D002136 2.4e-06 56.2 62 43.5
Gohir.D12G097400 Gossypium hirsutum HOM05D001320 ORTHO05D002136 2.4e-06 56.2 62 41.9
Manes.05G048700 Manihot esculenta HOM05D001320 ORTHO05D002136 2.4e-06 56.2 62 38.7
Thecc.01G382400 Theobroma cacao HOM05D001320 ORTHO05D002136 2.4e-06 56.2 62 41.9
Gohir.A12G094601 Gossypium hirsutum HOM05D001320 ORTHO05D002136 3.1e-06 55.8 62 40.3
Gohir.D12G097300 Gossypium hirsutum HOM05D001320 ORTHO05D002136 3.1e-06 55.8 62 40.3
Gorai.008G106000 Gossypium raimondii HOM05D001320 ORTHO05D002136 3.1e-06 55.8 62 40.3
Lalb_Chr13g0291841 Lupinus albus HOM05D001320 ORTHO05D002136 3.1e-06 55.8 74 39.2
Manes.02G038400 Manihot esculenta HOM05D001320 ORTHO05D002136 3.1e-06 55.8 75 38.7
PGR042G0628 Punica granatum HOM05D001320 ORTHO05D002136 3.1e-06 55.8 62 45.2
DCAR_006824 Daucus carota HOM05D001320 ORTHO05D002136 4.0e-06 55.5 63 38.1
Nitab4.5_0012398g0010 Nicotiana tabacum HOM05D001320 ORTHO05D002136 4.0e-06 55.5 62 40.3
Ca_19834_v3 Cicer arietinum L. HOM05D001320 ORTHO05D002136 5.3e-06 55.1 76 40.8
DCAR_008485 Daucus carota HOM05D001320 ORTHO05D002136 5.3e-06 55.1 62 40.3
FvH4_7g11120 Fragaria vesca HOM05D001320 ORTHO05D002136 5.3e-06 55.1 64 40.6
FAN01G1998 Fragaria x ananassa HOM05D001320 ORTHO05D002136 5.3e-06 55.1 64 40.6
FAN03G3091 Fragaria x ananassa HOM05D001320 ORTHO05D002136 5.3e-06 55.1 64 40.6
FAN06G2625 Fragaria x ananassa HOM05D001320 ORTHO05D002136 5.3e-06 55.1 64 40.6
FAN06G2903 Fragaria x ananassa HOM05D001320 ORTHO05D002136 5.3e-06 55.1 64 40.6
FAN10G1866 Fragaria x ananassa HOM05D001320 ORTHO05D002136 5.3e-06 55.1 64 40.6
FAN10G2195 Fragaria x ananassa HOM05D001320 ORTHO05D002136 5.3e-06 55.1 64 40.6
Lj9P565T37 Lonicera japonica HOM05D001320 ORTHO05D002136 5.3e-06 55.1 62 43.5
Lalb_Chr07g0190241 Lupinus albus HOM05D001320 ORTHO05D002136 5.3e-06 55.1 73 34.2
Os02g0662700 Oryza sativa ssp. japonica HOM05D001320 ORTHO05D002136 5.3e-06 55.1 65 38.5
Sc22g0000800 Simmondsia chinensis HOM05D001320 ORTHO05D002136 5.3e-06 55.1 62 41.9
Solyc08g078800.1 Solanum lycopersicum HOM05D001320 ORTHO05D002136 5.3e-06 55.1 62 40.3
Sopen08g027270 Solanum pennellii HOM05D001320 ORTHO05D002136 5.3e-06 55.1 62 40.3
Gorai.003G170700 Gossypium raimondii HOM05D001320 ORTHO05D002136 6.9e-06 54.7 62 41.9
Medtr4g026485 Medicago truncatula HOM05D001320 ORTHO05D002136 6.9e-06 54.7 75 37.3
Sabra03G0076900 Salix brachista HOM05D001320 ORTHO05D002136 6.9e-06 54.7 63 38.1
Duzib205G1927 Durio zibethinus HOM05D001320 ORTHO05D002136 9.0e-06 54.3 62 37.1
Nitab4.5_0000312g0160 Nicotiana tabacum HOM05D001320 ORTHO05D002136 9.0e-06 54.3 62 40.3
Potri.002G144200 Populus trichocarpa HOM05D001320 ORTHO05D002136 9.0e-06 54.3 62 35.5
Potri.002G144700 Populus trichocarpa HOM05D001320 ORTHO05D002136 9.0e-06 54.3 62 38.7
Potri.014G060500 Populus trichocarpa HOM05D001320 ORTHO05D002136 9.0e-06 54.3 62 38.7
TAR636G1008 Trochodendron aralioides HOM05D001320 ORTHO05D002136 9.0e-06 54.3 62 41.9


User provided reference genes

Program Settings