Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 2629.4 1337 100.0
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1837.8 1307 74.0
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1825.1 1302 73.0
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1715.3 1364 67.2
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1642.1 1310 66.1
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1598.9 1325 64.2
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1598.6 1294 65.4
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1595.1 1296 65.0
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1592.4 1294 64.8
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1592.4 1297 65.8
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1591.2 1299 64.6
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1590.1 1300 63.8
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1588.5 1181 71.2
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1588.5 1317 63.6
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1587.4 1306 65.0
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1585.5 1294 64.4
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1583.9 1294 64.2
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1582.0 1296 64.4
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1582.0 1296 64.3
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1581.2 1295 63.6
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1578.9 1299 63.6
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1574.7 1309 64.5
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1573.9 1295 64.2
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1571.6 1288 64.1
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1571.2 1311 63.6
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1570.4 1293 64.0
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1570.1 1292 63.2
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1570.1 1296 64.5
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1569.3 1308 63.8
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1567.7 1323 62.7
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1563.5 1346 62.9
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1560.8 1305 63.1
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1559.3 1305 62.8
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1558.9 1307 62.9
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1557.7 1326 62.0
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1553.9 1316 61.9
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1553.9 1310 63.5
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1553.1 1294 63.5
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1552.7 1292 63.9
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1550.4 1303 63.2
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1546.6 1299 63.4
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1546.2 1304 62.7
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1545.0 1299 62.4
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1544.3 1304 62.0
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1541.9 1298 63.2
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1540.4 1297 63.0
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1536.2 1298 63.2
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1533.9 1298 62.6
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1530.4 1302 61.5
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1530.4 1316 61.5
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1528.1 1296 61.6
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1527.3 1322 61.3
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1527.3 1304 62.4
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1527.3 1298 61.2
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1526.5 1298 61.8
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1525.4 1301 62.6
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1520.8 1330 60.2
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1520.0 1321 61.5
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1518.8 1306 63.0
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1508.0 1294 60.8
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1498.8 1398 58.7
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1497.6 1321 60.9
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1492.2 1318 60.2
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1488.8 1309 61.1
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1486.5 1310 60.8
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1484.5 1298 61.5
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1481.8 1206 64.8
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1481.1 1295 61.4
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1480.7 1293 61.4
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1479.2 1292 61.9
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1478.0 1294 61.1
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1473.0 1303 61.4
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1471.1 1199 64.5
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1468.8 1286 61.7
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1452.6 1203 63.7
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1451.8 1307 60.1
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1451.4 1305 59.8
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1450.6 1297 60.8
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1448.0 1313 59.2
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1443.7 1293 60.6
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1441.8 1295 60.2
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1441.4 1282 60.8
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1440.6 1302 60.0
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1439.5 1295 60.2
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1437.2 1206 62.7
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1436.4 1357 57.8
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1410.6 1295 59.5
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1401.3 1254 60.4
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1399.0 1285 59.1
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1375.1 1019 70.1
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1371.3 1226 60.6
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1324.7 1303 55.3
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1296.6 1292 55.1
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1277.3 1342 52.2
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1260.0 1041 62.7
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1218.8 1053 62.2
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1203.0 887 69.2
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1081.2 1297 49.5
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 1.1e-310 1070.5 933 59.8
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 8.2e-303 1044.3 1237 47.8
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 2.9e-300 1035.8 1306 45.6
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 8.5e-300 1034.2 799 66.2
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 3.2e-291 1005.7 888 60.0
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 7.4e-288 994.6 814 63.6
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 8.5e-276 954.5 980 55.3
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 8.9e-265 917.9 1235 43.8
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 3.6e-258 896.0 719 68.4
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 2.5e-235 820.1 1266 40.7
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 3.1e-193 680.2 1288 35.9
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 1.3e-186 658.3 580 62.4
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 5.1e-180 636.3 599 55.9
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 4.7e-173 613.2 624 53.5
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 2.2e-167 594.3 1053 37.5
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 7.7e-160 569.3 505 62.2
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 2.6e-155 554.3 1278 31.7
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 5.0e-151 540.0 513 59.6
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 5.6e-142 510.0 593 50.1
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 8.9e-124 449.5 326 69.0
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.3e-114 419.1 1134 30.2
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 8.7e-111 406.4 717 40.3
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.9e-98 364.8 347 55.6
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 2.9e-90 338.2 255 71.0
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 1.6e-88 332.4 221 75.6
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 2.1e-88 332.0 254 70.5
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 3.8e-82 311.2 267 58.8
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 3.8e-82 311.2 267 58.8
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.9e-74 285.0 271 56.8
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 3.0e-71 275.0 201 67.2
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 1.8e-44 186.0 210 49.5
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 7.0e-44 184.1 175 56.6
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 3.5e-43 181.8 161 57.1
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.3e-39 169.1 104 76.9
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.4e-38 165.2 161 54.0
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 3.5e-35 155.2 527 30.9
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 3.3e-33 148.7 135 60.7
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 1.4e-28 133.3 1227 21.8
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 1.8e-28 132.9 116 62.1
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 1.2e-27 130.2 224 39.7
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 4.9e-21 108.2 90 64.4
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 1.5e-17 96.7 130 37.7
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 4.3e-17 95.1 118 40.7
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 1.6e-16 93.2 118 39.8
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 2.8e-16 92.4 153 37.3
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 1.4e-12 80.1 117 40.2
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 1.9e-12 79.7 165 33.3
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 9.2e-12 77.4 48 83.3
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 3.5e-11 75.5 105 38.1
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 4.6e-11 75.1 57 66.7
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 3.9e-10 72.0 62 62.9
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 1.5e-09 70.1 62 53.2
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 1.6e-08 66.6 78 46.2
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 2.1e-08 66.2 138 31.2
PGSC0003DMG400046841 Solanum tuberosum HOM05D014102 ORTHO05D022958 8.9e-07 60.8 197 31.0


User provided reference genes

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