Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 1.2e-65 253.1 136 100.0
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 9.0e-24 114.0 123 60.2
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 3.4e-23 112.1 123 50.4
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 4.6e-20 101.7 120 53.3
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 2.3e-19 99.4 151 48.3
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 1.1e-18 97.1 151 47.7
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 7.4e-18 94.4 131 48.1
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 7.4e-18 94.4 118 47.5
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 1.3e-17 93.6 120 49.2
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 1.3e-17 93.6 140 40.7
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 1.7e-17 93.2 123 46.3
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 1.7e-17 93.2 125 46.4
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 4.8e-17 91.7 131 46.6
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 4.8e-17 91.7 131 46.6
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 8.2e-17 90.9 149 44.3
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 8.2e-17 90.9 144 45.8
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 2.4e-16 89.4 80 60.0
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 4.1e-16 88.6 111 46.8
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 9.1e-16 87.4 115 42.6
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 2.0e-15 86.3 140 40.7
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 2.0e-15 86.3 112 43.8
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 4.5e-15 85.1 114 47.4
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 1.3e-14 83.6 155 36.8
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 2.2e-14 82.8 122 43.4
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 3.8e-14 82.0 139 37.4
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 5.0e-14 81.6 114 42.1
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 8.5e-14 80.9 119 42.0
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 2.5e-13 79.3 111 43.2
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 3.2e-13 79.0 87 49.4
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 4.2e-13 78.6 141 39.7
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 1.2e-12 77.0 125 42.4
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 1.2e-12 77.0 124 38.7
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 1.6e-12 76.6 150 35.3
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 1.6e-12 76.6 133 40.6
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 1.6e-12 76.6 133 39.8
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 2.7e-12 75.9 147 38.1
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 3.6e-12 75.5 128 39.1
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 4.7e-12 75.1 141 39.0
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 4.7e-12 75.1 112 43.8
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 6.1e-12 74.7 113 43.4
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 6.1e-12 74.7 113 43.4
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 6.1e-12 74.7 121 43.0
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 7.9e-12 74.3 122 42.6
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 7.9e-12 74.3 113 42.5
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 1.0e-11 73.9 109 38.5
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 1.4e-11 73.6 113 42.5
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.4e-11 73.6 113 42.5
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.4e-11 73.6 113 42.5
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 1.4e-11 73.6 115 42.6
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 1.8e-11 73.2 130 38.5
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 1.8e-11 73.2 142 38.0
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 2.3e-11 72.8 112 41.1
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 3.9e-11 72.0 129 40.3
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 3.9e-11 72.0 75 50.7
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 3.9e-11 72.0 102 45.1
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 6.7e-11 71.2 72 47.2
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 8.8e-11 70.9 123 39.8
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 1.1e-10 70.5 139 37.4
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.1e-10 70.5 113 41.6
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 1.1e-10 70.5 148 36.5
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 2.0e-10 69.7 124 38.7
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 2.0e-10 69.7 110 39.1
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.6e-10 69.3 124 38.7
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 3.3e-10 68.9 85 43.5
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 5.7e-10 68.2 68 50.0
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 5.7e-10 68.2 104 38.5
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 9.7e-10 67.4 151 36.4
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 1.3e-09 67.0 81 46.9
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 2.2e-09 66.2 67 46.3
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 2.8e-09 65.9 76 48.7
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 4.8e-09 65.1 130 43.1
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 4.8e-09 65.1 72 48.6
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 6.3e-09 64.7 74 47.3
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 8.2e-09 64.3 67 44.8
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 8.2e-09 64.3 67 44.8
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 8.2e-09 64.3 131 35.1
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 1.1e-08 63.9 150 34.7
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 1.8e-08 63.2 122 35.2
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 2.4e-08 62.8 130 42.3
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 2.4e-08 62.8 146 37.0
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 3.1e-08 62.4 130 42.3
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 3.1e-08 62.4 137 40.9
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 3.1e-08 62.4 136 36.8
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 5.3e-08 61.6 100 42.0
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 5.3e-08 61.6 111 33.3
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 9.1e-08 60.8 128 35.2
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 9.1e-08 60.8 73 45.2
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 1.2e-07 60.5 120 35.0
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 1.2e-07 60.5 139 36.7
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 1.5e-07 60.1 154 37.7
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 2.6e-07 59.3 107 36.4
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 2.6e-07 59.3 67 41.8
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 2.6e-07 59.3 128 34.4
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 5.9e-07 58.2 155 33.5
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 5.9e-07 58.2 130 40.8
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 7.7e-07 57.8 163 32.5
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 7.7e-07 57.8 127 35.4
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 1.0e-06 57.4 118 36.4
SGA_v2.0_scaffold25G10722 Striga asiatica HOM05D001355 ORTHO05D004435 1.0e-06 57.4 35 88.6
SGA_v2.0_scaffold113G31766 Striga asiatica HOM05D001355 ORTHO05D016189 2.9e-06 55.8 30 100.0
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 3.8e-06 55.5 160 31.9


User provided reference genes

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