Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 2.4e-33 146.0 153 100.0
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 1.2e-21 107.1 71 77.5
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 3.6e-21 105.5 71 76.1
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 2.0e-19 99.8 71 70.4
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 1.3e-18 97.1 71 70.4
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 3.7e-18 95.5 71 70.4
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 2.4e-17 92.8 71 69.0
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 3.2e-17 92.4 73 68.5
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 4.1e-17 92.0 71 69.0
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 4.1e-17 92.0 71 69.0
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 1.2e-16 90.5 59 71.2
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 1.6e-16 90.1 68 69.1
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 4.6e-16 88.6 70 67.1
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 4.6e-16 88.6 66 72.7
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 4.6e-16 88.6 71 63.4
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 1.0e-15 87.4 56 73.2
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 1.0e-15 87.4 56 73.2
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 1.0e-15 87.4 71 64.8
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 1.0e-15 87.4 72 65.3
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 1.7e-15 86.7 56 73.2
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 1.7e-15 86.7 71 63.4
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 2.3e-15 86.3 71 63.4
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 3.0e-15 85.9 71 64.8
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 3.0e-15 85.9 58 70.7
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 3.0e-15 85.9 56 71.4
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 5.1e-15 85.1 68 67.6
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 5.1e-15 85.1 71 63.4
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 6.6e-15 84.7 71 62.0
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 1.1e-14 84.0 69 63.8
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 1.5e-14 83.6 58 70.7
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 1.5e-14 83.6 53 75.5
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 1.9e-14 83.2 64 71.9
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 2.5e-14 82.8 72 63.9
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 2.5e-14 82.8 71 57.7
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 3.3e-14 82.4 61 67.2
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 4.3e-14 82.0 71 57.7
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 5.6e-14 81.6 71 59.2
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 7.3e-14 81.3 71 60.6
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 7.3e-14 81.3 70 61.4
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 7.3e-14 81.3 79 60.8
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 7.3e-14 81.3 71 59.2
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 9.5e-14 80.9 71 59.2
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 9.5e-14 80.9 65 66.2
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 1.2e-13 80.5 56 67.9
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 1.6e-13 80.1 67 61.2
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 2.1e-13 79.7 53 71.7
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 2.1e-13 79.7 65 66.2
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 2.1e-13 79.7 59 71.2
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 2.8e-13 79.3 59 66.1
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 2.8e-13 79.3 70 60.0
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 2.8e-13 79.3 70 60.0
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 2.8e-13 79.3 66 66.7
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 3.6e-13 79.0 56 66.1
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 4.7e-13 78.6 71 60.6
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 4.7e-13 78.6 53 67.9
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 6.2e-13 78.2 65 64.6
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 1.4e-12 77.0 53 66.0
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 1.4e-12 77.0 65 64.6
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 1.4e-12 77.0 65 61.5
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 1.4e-12 77.0 71 56.3
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 1.8e-12 76.6 59 64.4
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 1.8e-12 76.6 71 59.2
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 2.3e-12 76.3 51 68.6
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 2.3e-12 76.3 51 68.6
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 2.3e-12 76.3 70 54.3
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 2.3e-12 76.3 57 66.7
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 3.1e-12 75.9 65 60.0
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 3.1e-12 75.9 71 59.2
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 4.0e-12 75.5 65 56.9
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 5.2e-12 75.1 53 66.0
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 5.2e-12 75.1 53 66.0
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 5.2e-12 75.1 53 66.0
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 5.2e-12 75.1 53 66.0
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 6.8e-12 74.7 53 64.2
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 6.8e-12 74.7 73 56.2
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 8.9e-12 74.3 51 66.7
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 8.9e-12 74.3 68 57.4
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 1.2e-11 73.9 56 64.3
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 1.5e-11 73.6 66 57.6
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 2.0e-11 73.2 48 72.9
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 2.0e-11 73.2 65 56.9
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 3.4e-11 72.4 63 61.9
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 4.4e-11 72.0 58 56.9
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 9.9e-11 70.9 68 54.4
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 9.9e-11 70.9 51 64.7
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 1.7e-10 70.1 58 63.8
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 2.9e-10 69.3 65 60.0
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 1.1e-09 67.4 71 50.7
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 1.1e-09 67.4 61 55.7
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 2.4e-09 66.2 63 54.0
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 4.1e-09 65.5 87 47.1
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 6.0e-08 61.6 56 57.1
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 7.8e-08 61.2 71 49.3
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 1.3e-07 60.5 60 56.7
QL01p017309 Quercus lobata HOM05D007144 ORTHO05D008709 2.3e-07 59.7 66 51.5
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 3.9e-07 58.9 39 64.1
Nn7g36693 Nelumbo nucifera HOM05D007144 ORTHO05D008709 1.1e-06 57.4 56 58.9
CBR_g48945 Chara braunii HOM05D007144 ORTHO05D008709 1.5e-06 57.0 67 47.8
Lj1A285T18 Lonicera japonica HOM05D007144 ORTHO05D008709 2.5e-06 56.2 46 67.4
Lalb_Chr18g0054451 Lupinus albus HOM05D007144 ORTHO05D008709 3.3e-06 55.8 44 65.9
PRCOL_00000160 Prasinoderma coloniale HOM05D007144 ORTHO05D008709 5.6e-06 55.1 62 45.2
PGR102G1924 Punica granatum HOM05D007144 ORTHO05D008709 7.3e-06 54.7 59 52.5


User provided reference genes

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