Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 1.0e-148 530.0 260 100.0
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 3.7e-119 431.8 229 90.8
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 2.7e-117 425.6 234 87.2
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 2.7e-117 425.6 229 90.4
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 3.5e-117 425.2 229 90.0
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 4.6e-117 424.9 229 90.0
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 7.8e-117 424.1 229 90.4
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 3.0e-116 422.2 229 89.5
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 3.0e-116 422.2 229 89.5
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 3.0e-116 422.2 229 90.4
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 3.0e-116 422.2 229 89.5
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 3.0e-116 422.2 229 88.2
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 6.6e-116 421.0 229 89.1
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 8.6e-116 420.6 229 89.5
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 1.1e-115 420.2 229 89.5
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.5e-115 419.1 229 89.1
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 3.3e-115 418.7 229 89.1
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 4.3e-115 418.3 229 88.2
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 4.3e-115 418.3 229 89.1
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 9.5e-115 417.2 229 88.6
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 1.2e-114 416.8 229 88.6
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 1.6e-114 416.4 224 90.2
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.6e-114 416.4 229 88.6
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.6e-114 416.4 229 87.8
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 2.1e-114 416.0 229 87.8
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 3.6e-114 415.2 229 88.2
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.6e-114 415.2 229 88.6
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 6.2e-114 414.5 229 87.3
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 6.2e-114 414.5 229 88.6
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 6.2e-114 414.5 229 88.6
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 1.1e-113 413.7 229 88.2
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 1.1e-113 413.7 229 87.8
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 1.1e-113 413.7 228 87.7
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 1.1e-113 413.7 229 88.2
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 2.3e-113 412.5 224 89.3
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 3.1e-113 412.1 229 87.3
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 4.0e-113 411.8 229 86.0
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 6.8e-113 411.0 229 87.3
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 1.2e-112 410.2 224 88.8
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.5e-112 409.8 229 87.3
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 2.6e-112 409.1 229 86.9
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 2.6e-112 409.1 229 86.0
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 5.8e-112 407.9 229 83.8
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 7.6e-112 407.5 229 86.0
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 9.9e-112 407.1 223 87.0
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 9.9e-112 407.1 223 86.5
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 1.3e-111 406.8 229 86.0
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 1.3e-111 406.8 229 84.3
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 1.7e-111 406.4 229 85.2
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 1.7e-111 406.4 229 86.0
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 2.2e-111 406.0 229 86.0
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 2.2e-111 406.0 229 86.0
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 2.9e-111 405.6 224 87.5
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 2.9e-111 405.6 229 86.0
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 3.8e-111 405.2 229 86.0
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.8e-111 405.2 224 85.7
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.8e-111 405.2 224 85.7
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 3.8e-111 405.2 224 87.9
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 4.9e-111 404.8 229 83.8
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 4.9e-111 404.8 224 85.7
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 4.9e-111 404.8 224 85.7
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 4.9e-111 404.8 230 85.2
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 8.4e-111 404.1 224 86.2
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.4e-110 403.3 223 86.5
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 1.9e-110 402.9 229 84.3
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 1.9e-110 402.9 224 86.6
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.9e-110 402.9 229 86.0
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 2.4e-110 402.5 229 86.0
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 7.1e-110 401.0 226 85.0
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 9.2e-110 400.6 224 84.8
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 9.2e-110 400.6 226 85.0
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 1.2e-109 400.2 229 83.0
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 2.1e-109 399.4 228 85.1
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 2.1e-109 399.4 228 85.1
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 2.1e-109 399.4 228 84.6
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 2.1e-109 399.4 230 84.8
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 2.1e-109 399.4 229 84.3
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 2.1e-109 399.4 223 86.1
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 2.1e-109 399.4 229 83.0
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 2.1e-109 399.4 223 86.5
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 2.1e-109 399.4 268 75.7
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 4.6e-109 398.3 229 83.8
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 4.6e-109 398.3 229 83.4
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 6.0e-109 397.9 229 84.7
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 7.8e-109 397.5 229 83.4
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 3.9e-108 395.2 229 82.5
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 6.6e-108 394.4 269 74.3
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 8.6e-108 394.0 228 83.3
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 8.6e-108 394.0 229 83.8
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.5e-107 393.3 230 84.8
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.9e-107 392.9 229 81.7
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.6e-106 389.8 229 79.9
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 8.1e-106 387.5 229 80.8
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 2.4e-105 386.0 224 82.1
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 3.1e-105 385.6 229 80.3
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 4.0e-105 385.2 207 89.9
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 4.0e-105 385.2 225 81.3
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 5.2e-105 384.8 229 80.3
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 5.2e-105 384.8 229 80.3
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 6.9e-105 384.4 229 80.3
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 6.9e-105 384.4 229 79.9
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 1.2e-104 383.6 226 81.4
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 1.5e-104 383.3 229 79.9
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 2.6e-104 382.5 262 74.4
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 2.6e-104 382.5 224 80.4
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 4.4e-104 381.7 229 79.9
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 4.4e-104 381.7 229 79.9
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 4.4e-104 381.7 229 80.8
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 5.8e-104 381.3 229 79.9
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 5.8e-104 381.3 232 82.3
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 7.6e-104 380.9 224 80.4
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 7.6e-104 380.9 229 79.9
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 7.6e-104 380.9 229 79.9
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 9.9e-104 380.6 229 79.5
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 1.3e-103 380.2 229 79.0
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 3.8e-103 378.6 229 79.5
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 6.4e-103 377.9 207 87.0
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 1.1e-102 377.1 223 80.3
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 1.9e-102 376.3 229 78.2
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 1.9e-102 376.3 205 86.8
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 1.9e-102 376.3 229 78.6
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 2.4e-102 375.9 224 80.8
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 4.2e-102 375.2 229 77.7
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 5.4e-102 374.8 229 77.7
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 5.4e-102 374.8 229 80.8
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 1.2e-101 373.6 229 77.7
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 2.1e-101 372.9 212 83.5
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 6.0e-101 371.3 233 81.1
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 1.0e-100 370.5 227 77.5
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.3e-100 369.4 201 88.1
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 2.3e-100 369.4 204 84.8
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 5.1e-100 368.2 224 80.4
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 1.6e-98 363.2 227 75.8
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 4.8e-98 361.7 226 79.6
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 8.1e-98 360.9 228 76.8
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 5.3e-97 358.2 226 77.4
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 1.2e-96 357.1 249 71.5
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 2.2e-95 352.8 201 83.1
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 4.9e-95 351.7 225 74.7
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 6.4e-95 351.3 225 74.7
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 3.5e-93 345.5 213 77.9
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 4.6e-93 345.1 221 76.5
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 7.9e-93 344.4 200 84.0
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 7.9e-93 344.4 303 62.7
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 1.6e-90 336.7 230 70.9
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 4.0e-89 332.0 227 71.8
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 1.9e-86 323.2 183 89.1
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 5.5e-86 321.6 227 66.1
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.1e-83 313.9 212 76.4
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 1.5e-83 313.5 167 88.6
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 1.9e-83 313.2 221 64.7
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 4.3e-83 312.0 168 86.3
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 5.1e-76 288.5 228 67.5
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 1.9e-75 286.6 152 89.5
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 7.6e-72 274.6 237 54.0
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 4.6e-69 265.4 144 86.1
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 6.1e-69 265.0 143 88.8
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 5.7e-67 258.5 133 90.2
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 9.7e-67 257.7 146 84.2
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 8.2e-66 254.6 214 63.6
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 5.9e-64 248.4 147 78.9
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 1.7e-63 246.9 133 85.0
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 2.4e-57 226.5 135 81.5
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.3e-52 209.9 138 76.1
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.1e-49 201.1 103 88.3
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 1.5e-46 190.7 116 82.8
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 5.2e-44 182.2 96 90.6
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 5.5e-38 162.2 89 87.6
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 4.1e-33 146.0 90 80.0
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 2.3e-31 140.2 72 88.9
TPR.G40455 Trifolium pratense HOM05D003698 ORTHO05D004320 3.3e-30 136.3 81 82.7
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 8.0e-29 131.7 71 84.5
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 1.0e-28 131.3 68 86.8
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 3.5e-24 116.3 65 83.1
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 3.8e-23 112.8 85 69.4
CAN.G134.80 Capsicum annuum HOM05D003698 ORTHO05D004320 6.1e-21 105.5 61 86.9
TPR.G18261 Trifolium pratense HOM05D003698 ORTHO05D004320 4.0e-20 102.8 81 66.7
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 1.6e-16 90.9 43 88.4
CSS0029944 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.8e-13 80.1 84 54.8
PGR044G1122 Punica granatum HOM05D003698 ORTHO05D004320 6.2e-13 79.0 116 43.1
Haze_05812 Corylus avellana HOM05D003698 ORTHO05D004320 1.8e-12 77.4 49 77.6
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 3.1e-12 76.6 113 40.7
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 2.9e-10 70.1 37 81.1
TAR636G2570 Trochodendron aralioides HOM05D003698 ORTHO05D004320 4.9e-10 69.3 72 55.6
TPR.G42 Trifolium pratense HOM05D003698 ORTHO05D004320 8.3e-10 68.6 30 93.3
Solyc08g076560.1 Solanum lycopersicum HOM05D003698 ORTHO05D391923 3.5e-08 63.2 38 78.9
Haze_02709 Corylus avellana HOM05D050389 ORTHO05D165297 1.5e-06 57.8 38 73.7


User provided reference genes

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