Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 0.0e+00 1319.7 644 100.0
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 1.6e-296 1022.3 647 77.3
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 6.1e-288 993.8 646 75.4
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.0e-282 976.5 659 73.7
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.0e-282 976.5 659 73.7
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 5.0e-258 894.4 650 68.3
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 6.6e-258 894.0 636 70.3
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 1.9e-257 892.5 650 68.2
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 1.5e-254 882.9 667 66.6
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 1.5e-254 882.9 650 68.0
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 2.2e-253 879.0 645 67.8
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 2.4e-252 875.5 652 67.2
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 9.2e-252 873.6 635 66.3
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 1.2e-251 873.2 656 66.3
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 1.2e-248 863.2 642 65.4
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 4.7e-248 861.3 679 64.5
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 6.8e-247 857.4 645 66.0
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 1.9e-244 849.4 637 65.0
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 1.2e-243 846.7 648 63.7
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 1.6e-243 846.3 636 66.7
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 2.1e-243 845.9 640 64.4
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 2.7e-243 845.5 639 65.1
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 1.3e-242 843.2 635 64.6
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 5.1e-242 841.3 636 64.0
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 1.1e-241 840.1 636 64.3
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 3.3e-241 838.6 642 65.4
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 4.3e-241 838.2 634 65.9
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 7.3e-241 837.4 636 63.8
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 1.2e-240 836.6 640 63.6
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 2.8e-240 835.5 647 62.9
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 6.2e-240 834.3 636 63.1
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 1.4e-239 833.2 640 64.8
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 2.4e-239 832.4 634 64.2
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 2.6e-238 828.9 648 63.9
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 7.6e-238 827.4 647 63.1
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 1.3e-237 826.6 649 62.1
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 8.4e-237 823.9 646 62.4
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 1.1e-236 823.5 642 62.3
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 3.2e-236 822.0 648 63.6
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 4.2e-236 821.6 639 63.8
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 5.4e-236 821.2 674 60.5
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.7e-235 818.9 663 61.4
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 1.7e-234 816.2 642 62.3
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 2.3e-234 815.8 646 62.4
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 8.7e-234 813.9 652 63.7
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 1.5e-233 813.1 639 63.2
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 1.6e-232 809.7 622 66.2
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 4.8e-232 808.1 656 61.3
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 6.2e-232 807.7 640 63.1
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 1.4e-231 806.6 643 62.4
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.8e-231 806.2 656 61.1
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 4.0e-231 805.1 633 64.8
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 9.0e-231 803.9 642 63.1
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 1.2e-230 803.5 645 61.7
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 2.2e-229 799.3 644 59.6
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 2.9e-229 798.9 638 61.9
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 4.2e-228 795.0 640 61.4
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 4.6e-227 791.6 682 59.8
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 6.0e-227 791.2 639 61.5
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 6.0e-227 791.2 639 61.0
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 6.0e-227 791.2 637 61.9
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 1.0e-226 790.4 642 62.8
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 3.0e-226 788.9 605 63.5
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 3.0e-226 788.9 641 62.9
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 8.7e-226 787.3 641 63.3
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 1.3e-224 783.5 633 63.0
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 2.1e-224 782.7 643 61.0
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 4.8e-224 781.6 634 62.6
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 3.1e-223 778.9 636 60.8
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 6.9e-223 777.7 641 62.2
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 9.0e-223 777.3 647 60.4
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 9.0e-223 777.3 655 60.2
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 3.4e-222 775.4 635 62.2
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 4.5e-222 775.0 631 61.5
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 1.3e-221 773.5 632 61.9
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 1.7e-221 773.1 648 59.9
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 2.4e-220 769.2 641 61.0
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 4.2e-220 768.5 633 61.8
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 7.9e-219 764.2 643 60.8
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.0e-218 763.8 634 61.5
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 3.3e-217 758.8 668 58.2
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.3e-216 756.9 639 59.9
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 5.3e-215 751.5 641 60.4
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 3.7e-208 728.8 640 58.0
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 8.2e-208 727.6 582 61.2
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 8.2e-200 701.0 634 56.6
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 6.5e-197 691.4 490 67.6
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 7.4e-193 677.9 641 53.8
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 1.4e-183 647.1 530 62.3
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 1.2e-182 644.0 451 69.4
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 5.7e-177 625.2 623 51.5
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 3.2e-172 609.4 622 51.9
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 5.9e-166 588.6 638 49.1
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 5.9e-158 562.0 504 57.7
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 1.7e-149 533.9 614 47.7
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 5.8e-145 518.8 428 61.7
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 4.6e-142 509.2 355 67.0
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 4.6e-134 482.6 469 52.5
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 8.6e-133 478.4 330 69.4
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 5.8e-129 465.7 332 68.4
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 9.0e-98 362.1 414 47.6
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 2.5e-71 274.2 266 53.4
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 2.0e-65 254.6 188 64.9
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 1.2e-62 245.4 203 61.6
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 4.7e-62 243.4 175 62.3
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 2.9e-48 197.6 129 68.2
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 1.2e-46 192.2 132 65.9
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 6.1e-46 189.9 150 62.0
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 2.3e-45 188.0 190 51.6
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 1.5e-39 168.7 131 61.8
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 1.1e-34 152.5 176 47.2
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 3.9e-32 144.1 107 60.7
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 1.1e-31 142.5 74 85.1
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 3.1e-29 134.4 113 59.3
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 3.3e-23 114.4 64 82.8
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 1.0e-16 92.8 84 54.8


User provided reference genes

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