Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.4e-245 852.4 423 100.0
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 2.0e-162 576.2 433 70.2
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.9e-161 572.4 391 74.2
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 1.4e-160 570.1 427 68.4
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 1.6e-156 556.6 414 69.8
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.6e-154 549.3 417 68.8
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 9.9e-154 547.4 417 68.6
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 1.4e-152 543.5 382 72.0
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.5e-149 532.7 419 66.8
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 4.3e-149 531.9 385 71.9
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 4.3e-149 531.9 415 68.2
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 1.6e-148 530.0 415 67.0
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 2.8e-148 529.3 407 66.3
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 3.7e-148 528.9 378 69.3
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 4.8e-148 528.5 374 73.3
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 6.2e-148 528.1 387 69.0
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 6.2e-148 528.1 378 71.4
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.4e-147 526.9 379 71.2
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.4e-147 526.9 379 71.2
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 5.3e-147 525.0 402 67.7
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.2e-146 523.9 413 64.9
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 2.0e-146 523.1 379 70.7
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 4.5e-146 521.9 418 64.8
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.7e-145 520.0 385 67.5
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.7e-145 520.0 412 64.1
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 2.9e-145 519.2 404 66.3
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 2.9e-145 519.2 413 63.7
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 8.4e-145 517.7 385 67.0
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.2e-144 515.8 414 65.7
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 5.5e-144 515.0 413 64.9
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 5.5e-144 515.0 420 65.0
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 7.1e-144 514.6 412 64.3
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 9.3e-144 514.2 396 65.4
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 1.6e-143 513.5 368 69.6
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 3.5e-143 512.3 409 65.3
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.5e-143 512.3 415 62.9
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 1.3e-142 510.4 350 72.3
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.3e-142 510.4 379 66.8
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.3e-142 509.6 419 63.0
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.3e-142 509.6 415 62.9
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 3.9e-142 508.8 421 61.8
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 6.7e-142 508.1 342 75.4
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 8.7e-142 507.7 416 62.5
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 4.3e-141 505.4 385 66.8
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 5.7e-141 505.0 419 62.5
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 5.7e-141 505.0 416 62.0
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 7.4e-141 504.6 342 74.6
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 2.2e-140 503.1 350 70.9
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 2.2e-140 503.1 408 65.0
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 2.2e-140 503.1 350 71.1
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.8e-140 502.7 416 62.0
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 6.3e-140 501.5 421 62.5
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 8.2e-140 501.1 405 64.0
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 8.2e-140 501.1 414 62.1
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.8e-139 500.0 372 65.1
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 4.1e-139 498.8 364 65.4
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 4.1e-139 498.8 425 61.2
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.0e-138 496.5 354 70.3
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 5.9e-138 495.0 405 62.2
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 1.3e-137 493.8 397 61.7
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 2.9e-137 492.7 404 64.6
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 6.5e-137 491.5 405 63.5
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 8.5e-137 491.1 364 65.9
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.4e-136 490.3 414 58.0
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.4e-136 490.3 484 56.4
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.4e-136 490.3 397 61.7
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.9e-136 490.0 346 69.7
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 3.2e-136 489.2 408 62.5
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 4.2e-136 488.8 413 60.8
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 4.2e-136 488.8 404 62.9
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 5.5e-136 488.4 346 69.7
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 5.5e-136 488.4 368 66.3
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.2e-135 487.3 346 69.1
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.2e-135 487.3 384 65.9
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.2e-135 487.3 346 69.7
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.6e-135 486.9 389 63.8
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.6e-135 486.9 407 62.9
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 2.1e-135 486.5 354 66.9
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.7e-135 486.1 346 69.1
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 3.6e-135 485.7 389 63.5
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.0e-134 484.2 346 68.8
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.4e-134 483.8 346 68.5
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.4e-134 483.8 346 68.5
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 1.8e-134 483.4 413 60.5
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 2.3e-134 483.0 427 59.3
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.3e-134 483.0 365 65.8
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 3.9e-134 482.3 386 63.5
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 6.7e-134 481.5 427 59.3
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 6.7e-134 481.5 365 65.5
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.5e-133 480.3 403 64.0
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.9e-133 479.9 390 62.6
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 3.3e-133 479.2 350 67.7
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 3.3e-133 479.2 334 70.7
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 4.3e-133 478.8 346 67.1
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 4.3e-133 478.8 390 62.6
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 5.7e-133 478.4 397 61.2
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 7.4e-133 478.0 346 67.6
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 7.4e-133 478.0 346 67.6
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 9.7e-133 477.6 382 63.1
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.7e-132 476.9 397 61.2
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.1e-131 474.2 413 61.5
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 2.4e-131 473.0 346 66.5
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 7.7e-130 468.0 334 68.6
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.3e-129 467.2 372 63.7
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.4e-128 463.8 389 61.4
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 3.6e-127 459.1 365 64.4
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 3.9e-126 455.7 346 65.6
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.5e-125 453.8 341 67.4
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 4.8e-124 448.7 373 63.8
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 4.2e-120 435.6 310 68.4
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 2.7e-119 433.0 325 66.8
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 8.2e-116 421.4 356 59.8
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 1.8e-115 420.2 388 59.3
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 5.9e-114 415.2 381 58.5
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.7e-111 405.6 344 61.3
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 6.1e-111 405.2 319 66.1
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 8.8e-110 401.4 370 55.7
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.7e-106 389.8 380 51.8
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-104 384.0 358 53.1
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 5.2e-102 375.6 350 52.9
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 3.7e-100 369.4 414 52.7
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 2.5e-96 356.7 413 50.8
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.3e-92 344.4 416 49.5
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 3.7e-92 342.8 316 51.6
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 9.8e-85 318.2 257 63.4
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.2e-82 311.2 223 67.3
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 3.2e-75 286.6 321 43.6
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 7.0e-75 285.4 334 49.7
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.0e-73 281.6 314 44.9
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.3e-73 281.2 312 47.1
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-70 271.6 317 45.1
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 9.2e-67 258.5 305 43.3
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.1e-66 257.3 294 45.2
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.3e-64 249.6 287 42.5
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 4.7e-63 246.1 264 51.9
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.1e-63 245.4 287 41.8
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.1e-63 245.4 300 41.3
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.1e-62 243.4 245 54.7
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.0e-62 243.0 287 42.9
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.6e-61 240.4 307 38.8
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.2e-60 237.3 181 63.5
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 2.1e-58 230.7 168 68.5
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-57 227.6 269 40.9
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 3.3e-56 223.4 151 76.8
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 5.8e-53 212.6 183 62.8
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 1.1e-51 208.4 311 37.9
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.0e-50 202.6 153 60.1
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 7.3e-48 195.7 164 62.2
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.3e-43 178.7 317 33.1
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.6e-42 177.9 314 36.0
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.0e-42 176.0 320 31.6
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 7.9e-42 175.6 147 61.2
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 2.3e-41 174.1 220 42.3
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.0e-41 173.7 343 31.5
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.9e-41 173.3 144 66.0
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.7e-41 172.6 314 34.7
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.3e-40 169.9 314 33.8
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.1e-33 146.4 319 33.2
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.9e-32 144.4 316 26.9
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.4e-30 137.5 308 28.6
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 5.3e-30 136.3 119 52.9
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.5e-27 126.3 313 30.0
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.1e-27 125.9 224 32.6
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-26 125.2 103 57.3
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.9e-26 122.5 297 28.6
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 3.0e-25 120.6 103 63.1
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 5.1e-25 119.8 100 60.0
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 8.7e-25 119.0 312 29.2
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 8.7e-25 119.0 77 79.2
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-23 115.2 190 34.2
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.4e-22 110.9 309 29.4
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.2e-21 108.6 318 28.6
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.7e-21 105.9 313 27.8
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 3.0e-17 94.0 348 24.1
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 4.1e-14 83.6 300 25.0
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 6.5e-12 76.3 63 58.7
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-07 61.2 92 41.3


User provided reference genes

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