Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 5.2e-79 297.7 159 100.0
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 3.2e-52 208.8 154 74.7
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 1.2e-38 163.7 159 59.7
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 1.9e-36 156.4 157 54.8
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 2.3e-31 139.4 154 54.5
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 2.2e-29 132.9 168 50.0
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 2.4e-28 129.4 159 47.8
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 6.8e-23 111.3 146 49.3
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 2.0e-22 109.8 142 49.3
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 2.6e-22 109.4 134 47.8
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 3.8e-21 105.5 143 47.6
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 1.1e-20 104.0 160 42.5
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.4e-20 103.6 138 46.4
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 9.3e-20 100.9 152 46.1
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.3e-18 97.1 140 44.3
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 3.9e-18 95.5 159 39.0
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 5.1e-18 95.1 179 38.5
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 5.1e-18 95.1 146 43.2
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.1e-17 94.0 136 43.4
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 1.1e-17 94.0 153 42.5
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 2.5e-17 92.8 138 40.6
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 3.3e-17 92.4 159 40.3
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 5.6e-17 91.7 146 42.5
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 5.6e-17 91.7 151 43.0
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 7.3e-17 91.3 138 42.8
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 7.3e-17 91.3 156 41.7
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 1.3e-16 90.5 142 38.7
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 1.6e-16 90.1 130 43.1
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 1.6e-16 90.1 221 33.5
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 2.1e-16 89.7 155 38.7
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 2.8e-16 89.4 144 39.6
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 2.8e-16 89.4 146 43.2
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 2.8e-16 89.4 146 45.2
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 2.8e-16 89.4 134 41.8
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 3.6e-16 89.0 145 40.7
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 4.8e-16 88.6 149 38.9
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 6.2e-16 88.2 133 38.3
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 6.2e-16 88.2 155 36.1
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 8.1e-16 87.8 147 40.8
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 1.1e-15 87.4 156 38.5
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 1.1e-15 87.4 153 39.2
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.1e-15 87.4 159 38.4
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 1.4e-15 87.0 138 39.1
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 1.4e-15 87.0 128 43.8
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 1.8e-15 86.7 134 41.0
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 2.4e-15 86.3 165 39.4
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 2.4e-15 86.3 135 40.0
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 2.4e-15 86.3 149 43.0
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 3.1e-15 85.9 139 42.4
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 3.1e-15 85.9 152 36.2
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 4.0e-15 85.5 155 38.1
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 4.0e-15 85.5 159 39.6
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 4.0e-15 85.5 146 39.0
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 5.3e-15 85.1 129 39.5
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 6.9e-15 84.7 129 39.5
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 9.0e-15 84.3 142 35.9
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 1.5e-14 83.6 132 40.2
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 4.4e-14 82.0 141 41.1
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 4.4e-14 82.0 132 40.2
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 4.4e-14 82.0 139 41.7
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 5.8e-14 81.6 125 42.4
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 5.8e-14 81.6 132 38.6
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 7.6e-14 81.3 142 40.8
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 7.6e-14 81.3 128 42.2
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 9.9e-14 80.9 143 35.7
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 9.9e-14 80.9 143 39.9
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 1.3e-13 80.5 125 40.0
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.7e-13 80.1 143 35.0
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 1.7e-13 80.1 121 43.0
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 3.8e-13 79.0 147 34.0
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 3.8e-13 79.0 134 36.6
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 4.9e-13 78.6 140 39.3
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 4.9e-13 78.6 141 34.0
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 1.1e-12 77.4 119 41.2
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 1.1e-12 77.4 158 38.6
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 1.4e-12 77.0 125 42.4
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 2.4e-12 76.3 145 38.6
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 3.2e-12 75.9 154 33.8
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 4.2e-12 75.5 139 40.3
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 5.4e-12 75.1 141 33.3
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 5.4e-12 75.1 152 33.6
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 9.3e-12 74.3 155 35.5
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.2e-11 73.9 142 40.8
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 1.2e-11 73.9 145 38.6
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.6e-11 73.6 139 38.8
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 2.1e-11 73.2 147 36.7
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 2.7e-11 72.8 158 32.3
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 2.7e-11 72.8 140 39.3
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 3.5e-11 72.4 142 34.5
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 3.5e-11 72.4 139 40.3
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 3.5e-11 72.4 136 40.4
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 4.6e-11 72.0 136 40.4
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 7.9e-11 71.2 141 34.0
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 1.3e-10 70.5 220 32.3
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 3.0e-10 69.3 141 34.0
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 5.1e-10 68.6 157 33.1
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 8.7e-10 67.8 139 33.8
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 2.5e-09 66.2 142 38.0
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 4.3e-09 65.5 139 32.4
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 4.3e-09 65.5 155 32.3
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 5.6e-09 65.1 155 30.3
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 7.3e-09 64.7 142 33.1
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 1.3e-08 63.9 142 33.1
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 1.3e-08 63.9 142 33.1
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 1.3e-08 63.9 142 33.1
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 1.3e-08 63.9 142 33.1
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 6.2e-08 61.6 136 33.8
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 1.1e-07 60.8 155 29.0
SalBow5G5348 Salvia bowleyana HOM05D006065 ORTHO05D351297 5.3e-07 58.5 122 36.1
AUR62022552 Chenopodium quinoa HOM05D006065 ORTHO05D007672 2.6e-06 56.2 94 40.4
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 3.4e-06 55.8 156 34.0
TAR375G0974 Trochodendron aralioides HOM05D006065 ORTHO05D007672 4.5e-06 55.5 63 52.4


User provided reference genes

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