Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold43G16396 Striga asiatica HOM05D007525 ORTHO05D003398 2.8e-148 528.5 252 100.0
MSTRG.4841 Avicennia marina HOM05D007525 ORTHO05D003398 5.1e-97 358.2 250 68.4
SalBow5G0215 Salvia bowleyana HOM05D007525 ORTHO05D003398 3.7e-95 352.1 246 68.7
Migut.N01460 Erythranthe guttata HOM05D007525 ORTHO05D003398 1.4e-91 340.1 247 67.2
Oeu036594.1 Olea europaea HOM05D007525 ORTHO05D003398 6.7e-89 331.3 249 63.5
GSVIVG01026980001 Vitis vinifera HOM05D007525 ORTHO05D003398 1.5e-88 330.1 248 64.1
Manes.05G030450 Manihot esculenta HOM05D007525 ORTHO05D003398 2.1e-87 326.2 248 63.7
Nn1g01647 Nelumbo nucifera HOM05D007525 ORTHO05D003398 3.1e-86 322.4 248 63.3
TAR636G1192 Trochodendron aralioides HOM05D007525 ORTHO05D003398 4.5e-85 318.5 249 63.9
CSS0031135 Camellia sinensis var. sinensis HOM05D007525 ORTHO05D003398 2.2e-84 316.2 255 61.6
Gohir.D07G146200 Gossypium hirsutum HOM05D007525 ORTHO05D003398 4.9e-84 315.1 249 59.8
PGR042G3120 Punica granatum HOM05D007525 ORTHO05D003398 8.4e-84 314.3 250 60.4
unitig_22.g6725 Utricularia gibba HOM05D007525 ORTHO05D003398 1.4e-83 313.5 246 64.2
Atru.chr5.548 Acer truncatum HOM05D007525 ORTHO05D003398 1.9e-83 313.2 248 62.1
Potri.002G162800 Populus trichocarpa HOM05D007525 ORTHO05D003398 1.9e-83 313.2 251 60.2
Sopen01g038780 Solanum pennellii HOM05D007525 ORTHO05D003398 2.5e-83 312.8 260 60.8
Cfa003884 Carpinus fangiana HOM05D007525 ORTHO05D003398 4.2e-83 312.0 248 60.5
Nitab4.5_0010703g0010 Nicotiana tabacum HOM05D007525 ORTHO05D003398 1.2e-82 310.5 254 60.2
Duzib133G0712 Durio zibethinus HOM05D007525 ORTHO05D003398 2.7e-82 309.3 251 59.4
Gorai.001G158400 Gossypium raimondii HOM05D007525 ORTHO05D003398 4.6e-82 308.5 249 58.2
Peaxi162Scf00020g00126 Petunia axillaris HOM05D007525 ORTHO05D003398 1.0e-81 307.4 260 59.6
Prupe.2G175600 Prunus persica HOM05D007525 ORTHO05D003398 1.0e-81 307.4 252 59.9
Sabra02G0147700 Salix brachista HOM05D007525 ORTHO05D003398 1.0e-81 307.4 251 59.0
Solyc01g095000.3 Solanum lycopersicum HOM05D007525 ORTHO05D003398 1.0e-81 307.4 260 59.2
Thecc.01G354100 Theobroma cacao HOM05D007525 ORTHO05D003398 1.0e-81 307.4 249 59.4
Cpa.g.sc184.25 Carica papaya HOM05D007525 ORTHO05D003398 1.8e-81 306.6 244 61.1
Nitab4.5_0000915g0170 Nicotiana tabacum HOM05D007525 ORTHO05D003398 3.9e-81 305.4 255 58.8
Actinidia10060 Actinidia chinensis HOM05D007525 ORTHO05D003398 1.5e-80 303.5 248 61.3
Lj7A509T109 Lonicera japonica HOM05D007525 ORTHO05D003398 1.9e-80 303.1 229 67.2
PGSC0003DMG400000187 Solanum tuberosum HOM05D007525 ORTHO05D003398 1.9e-80 303.1 263 58.6
Gohir.A07G140800 Gossypium hirsutum HOM05D007525 ORTHO05D003398 9.7e-80 300.8 249 58.2
Ciclev10022006m.g Citrus clementina HOM05D007525 ORTHO05D003398 6.3e-79 298.1 253 57.3
EL10Ac1g00368 Beta vulgaris HOM05D007525 ORTHO05D003398 1.8e-78 296.6 260 58.5
MELO3C021185.2 Cucumis melo HOM05D007525 ORTHO05D003398 2.4e-78 296.2 247 57.9
CiPaw.01G065400 Carya illinoinensis HOM05D007525 ORTHO05D003398 3.1e-78 295.8 244 59.0
AUR62022606 Chenopodium quinoa HOM05D007525 ORTHO05D003398 3.1e-78 295.8 208 67.8
CANSAT56G0175 Cannabis sativa HOM05D007525 ORTHO05D003398 1.2e-77 293.9 219 63.5
CAN.G78.117 Capsicum annuum HOM05D007525 ORTHO05D003398 2.6e-77 292.7 263 56.7
MD01G1069500 Malus domestica HOM05D007525 ORTHO05D003398 2.6e-77 292.7 218 63.8
CsaV3_6G000860 Cucumis sativus L. HOM05D007525 ORTHO05D003398 7.7e-77 291.2 225 60.9
Eucgr.E00102 Eucalyptus grandis HOM05D007525 ORTHO05D003398 7.7e-77 291.2 221 62.9
Thhalv10001607m.g Eutrema salsugineum HOM05D007525 ORTHO05D003398 2.2e-76 289.7 247 57.5
vmacro13241 Vaccinium macrocarpon HOM05D007525 ORTHO05D003398 2.2e-76 289.7 188 70.2
RcHm_v2.0_Chr1g0357281 Rosa chinensis HOM05D007525 ORTHO05D003398 2.9e-76 289.3 257 56.0
TWI59G1390 Tripterygium wilfordii HOM05D007525 ORTHO05D003398 2.9e-76 289.3 230 60.4
ClCG06G003450 Citrullus lanatus HOM05D007525 ORTHO05D003398 8.5e-76 287.7 217 62.2
FvH4_7g15085 Fragaria vesca HOM05D007525 ORTHO05D003398 8.5e-76 287.7 249 56.2
ATR0661G217 Amborella trichopoda HOM05D007525 ORTHO05D003398 1.9e-75 286.6 223 62.3
AL4G45330 Arabidopsis lyrata HOM05D007525 ORTHO05D003398 4.2e-75 285.4 246 57.7
AT2G46100 Arabidopsis thaliana HOM05D007525 ORTHO05D003398 4.2e-75 285.4 246 57.7
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.2e-75 284.6 249 55.8
Carub.0004s2880 Capsella rubella HOM05D007525 ORTHO05D003398 9.4e-75 284.3 246 56.9
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.1e-74 283.1 249 55.8
Ca_03496_v3 Cicer arietinum L. HOM05D007525 ORTHO05D003398 2.7e-74 282.7 250 56.0
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.7e-74 282.7 249 55.4
VMungo0331G0679 Vigna mungo HOM05D007525 ORTHO05D003398 4.6e-74 282.0 241 56.4
Ah.05g180250 Amaranthus hybridus HOM05D007525 ORTHO05D003398 8.8e-73 277.7 254 57.1
Aqoxy7G00302 Aquilegia oxysepala HOM05D007525 ORTHO05D003398 2.5e-72 276.2 227 61.7
A05p06060 Brassica napus HOM05D007525 ORTHO05D003398 2.5e-72 276.2 201 65.2
COL.COLO4_12762 Corchorus olitorius HOM05D007525 ORTHO05D003398 2.5e-72 276.2 226 58.8
Rhsim07G0011500 Rhododendron simsii HOM05D001943 ORTHO05D001969 4.3e-72 275.4 235 56.2
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 7.4e-72 274.6 213 62.4
Cc00_g17820 Coffea canephora HOM05D007525 ORTHO05D003398 7.4e-72 274.6 188 67.6
PSO478G5123 Papaver somniferum HOM05D007525 ORTHO05D003398 9.7e-72 274.2 233 59.2
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 1.7e-71 273.5 202 63.4
Psat4g157560 Pisum sativum HOM05D007525 ORTHO05D003398 2.2e-71 273.1 219 60.3
Medtr8g028545 Medicago truncatula HOM05D007525 ORTHO05D003398 3.7e-71 272.3 206 61.7
HPP92_021017 Vanilla planifolia HOM05D007525 ORTHO05D003398 4.8e-71 271.9 239 58.6
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 6.3e-71 271.6 213 62.0
Lalb_Chr10g0096641 Lupinus albus HOM05D007525 ORTHO05D003398 1.1e-70 270.8 249 55.8
Lj3g0004891 Lotus japonicus HOM05D007525 ORTHO05D003398 1.4e-70 270.4 216 60.6
CDE12G0297 Ceratophyllum demersum HOM05D007525 ORTHO05D003398 2.6e-69 266.2 236 53.8
Zm00001eb073280 Zea mays HOM05D007525 ORTHO05D003398 1.7e-68 263.5 243 56.4
QL04p055069 Quercus lobata HOM05D007525 ORTHO05D003398 2.9e-68 262.7 378 40.2
Sp4g28160 Schrenkiella parvula HOM05D007525 ORTHO05D003398 3.8e-68 262.3 247 53.4
THA.LOC104817313 Tarenaya hassleriana HOM05D007525 ORTHO05D003398 1.9e-67 260.0 257 52.5
HanXRQChr03g0093451 Helianthus annuus HOM05D007525 ORTHO05D003398 5.5e-67 258.5 194 63.9
ECA240G1228 Erigeron canadensis HOM05D007525 ORTHO05D003398 6.7e-65 251.5 195 60.5
MBI04_g26962_MAGBIO Magnolia biondii HOM05D007525 ORTHO05D003398 8.8e-65 251.1 225 59.1
TPR.G28291 Trifolium pratense HOM05D007525 ORTHO05D003398 1.5e-64 250.4 182 64.3
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.3e-63 247.3 231 53.2
AUR62004400 Chenopodium quinoa HOM05D007525 ORTHO05D003398 2.8e-63 246.1 258 53.9
Haze_15550 Corylus avellana HOM05D007525 ORTHO05D003398 2.6e-61 239.6 248 52.0
Phvul.010G105000 Phaseolus vulgaris HOM05D007525 ORTHO05D003398 3.8e-60 235.7 206 55.8
Os04g0578200 Oryza sativa ssp. japonica HOM05D007525 ORTHO05D003398 2.5e-59 233.0 218 53.7
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 2.7e-58 229.6 214 56.1
Lsat_1_v5_gn_3_138380 Lactuca sativa HOM05D007525 ORTHO05D003398 1.1e-56 224.2 174 62.6
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 4.8e-55 218.8 140 70.0
DCAR_025212 Daucus carota HOM05D001555 ORTHO05D001616 5.5e-51 205.3 135 69.6
Glyma.16G031100 Glycine max HOM05D007525 ORTHO05D003398 1.6e-50 203.8 218 48.2
Sc23g0002640 Simmondsia chinensis HOM05D007525 ORTHO05D003398 1.8e-49 200.3 209 50.7
Sed0025619 Sechium edule HOM05D007525 ORTHO05D003398 4.0e-41 172.6 176 53.4
Mapoly0153s0018 Marchantia polymorpha HOM05D007525 ORTHO05D003398 1.5e-40 170.6 228 39.0
CBR_g31994 Chara braunii HOM05D007525 ORTHO05D003398 2.0e-37 160.2 209 35.9
SMO358G0422 Selaginella moellendorffii HOM05D007525 ORTHO05D003398 3.0e-33 146.4 190 36.3
MCO05G605 Micromonas commoda HOM05D007525 ORTHO05D003398 3.4e-32 142.9 191 40.8
AagrBONN_evm.TU.Sc2ySwM_228.1193 Anthoceros agrestis HOM05D007525 ORTHO05D003398 3.7e-31 139.4 137 44.5
Pp3c4_17920 Physcomitrium patens HOM05D007525 ORTHO05D003398 3.2e-30 136.3 202 35.1
Cre06.g292400 Chlamydomonas reinhardtii HOM05D007525 ORTHO05D003398 7.5e-24 115.2 200 33.0
SEGI_20701 Sequoiadendron giganteum HOM05D007525 ORTHO05D003398 5.4e-22 109.0 78 55.1
Zm00001eb250490 Zea mays HOM05D007525 ORTHO05D003398 4.6e-21 105.9 128 46.1
PRCOL_00006625 Prasinoderma coloniale HOM05D007525 ORTHO05D003398 4.7e-18 95.9 204 29.9
FAN02G2898 Fragaria x ananassa HOM05D006905 ORTHO05D003398 3.1e-17 93.2 236 27.5
Medtr4g037265 Medicago truncatula HOM05D007525 ORTHO05D003398 4.0e-17 92.8 54 72.2
Cfa006463 Carpinus fangiana HOM05D006905 ORTHO05D003398 5.2e-17 92.4 247 30.4
Duzib128G0775 Durio zibethinus HOM05D006905 ORTHO05D003398 6.8e-17 92.0 254 28.7
FvH4_6g03440 Fragaria vesca HOM05D006905 ORTHO05D003398 8.9e-17 91.7 237 29.1
FAN09G1595 Fragaria x ananassa HOM05D006905 ORTHO05D003398 8.9e-17 91.7 239 27.6
Manes.17G000837 Manihot esculenta HOM05D007525 ORTHO05D003398 8.9e-17 91.7 65 61.5
PGR083G1281 Punica granatum HOM05D006905 ORTHO05D003398 8.9e-17 91.7 220 29.1
Cre10.g464250 Chlamydomonas reinhardtii HOM05D006905 ORTHO05D003398 1.2e-16 91.3 153 31.4
Prupe.6G339800 Prunus persica HOM05D006905 ORTHO05D003398 3.4e-16 89.7 243 32.5
FAN05G2111 Fragaria x ananassa HOM05D006905 ORTHO05D003398 1.7e-15 87.4 236 28.0
FAN14G2439 Fragaria x ananassa HOM05D006905 ORTHO05D003398 1.7e-15 87.4 236 28.4
CARHR141360 Cardamine hirsuta HOM05D007525 ORTHO05D003398 2.2e-15 87.0 118 42.4
unitig_8.g4913 Utricularia gibba HOM05D006905 ORTHO05D003398 2.9e-15 86.7 233 29.2
Potri.013G036500 Populus trichocarpa HOM05D006905 ORTHO05D003398 3.7e-15 86.3 227 27.8
MD04G1220800 Malus domestica HOM05D006905 ORTHO05D003398 4.9e-15 85.9 233 31.8
PGR083G0691 Punica granatum HOM05D006905 ORTHO05D003398 6.4e-15 85.5 220 27.7
Migut.N01907 Erythranthe guttata HOM05D006905 ORTHO05D003398 8.3e-15 85.1 226 30.1
COL.COLO4_38037 Corchorus olitorius HOM05D006905 ORTHO05D003398 1.9e-14 84.0 226 28.3
Gorai.004G263200 Gossypium raimondii HOM05D006905 ORTHO05D003398 1.9e-14 84.0 223 30.0
Gohir.D08G246700 Gossypium hirsutum HOM05D006905 ORTHO05D003398 4.1e-14 82.8 223 30.0
Cpa.g.sc117.65 Carica papaya HOM05D006905 ORTHO05D003398 9.2e-14 81.6 231 29.4
Eucgr.B01715 Eucalyptus grandis HOM05D006905 ORTHO05D003398 1.6e-13 80.9 198 28.3
RcHm_v2.0_Chr3g0451941 Rosa chinensis HOM05D006905 ORTHO05D003398 1.6e-13 80.9 221 28.5
TAR636G1711 Trochodendron aralioides HOM05D006905 ORTHO05D003398 1.6e-13 80.9 238 26.9
Zm00001eb036490 Zea mays HOM05D007525 ORTHO05D003398 1.6e-13 80.9 52 73.1
Eucgr.L02187 Eucalyptus grandis HOM05D006905 ORTHO05D003398 3.5e-13 79.7 227 28.6
Actinidia30925 Actinidia chinensis HOM05D006905 ORTHO05D003398 7.8e-13 78.6 231 29.0
Pp3c24_12540 Physcomitrium patens HOM05D006905 ORTHO05D003398 7.8e-13 78.6 208 27.4
GSVIVG01021847001 Vitis vinifera HOM05D006905 ORTHO05D003398 7.8e-13 78.6 222 25.7
TWI56G1496 Tripterygium wilfordii HOM05D006905 ORTHO05D003398 1.0e-12 78.2 227 25.1
CsaV3_2G004310 Cucumis sativus L. HOM05D006905 ORTHO05D003398 1.3e-12 77.8 237 25.7
Sed0006348 Sechium edule HOM05D006905 ORTHO05D003398 3.0e-12 76.6 223 27.4
BraA05t22982Z Brassica rapa HOM05D006905 ORTHO05D003398 3.9e-12 76.3 215 29.3
THA.LOC104802823 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 6.6e-12 75.5 223 26.9
Mapoly0006s0024 Marchantia polymorpha HOM05D006905 ORTHO05D003398 2.5e-11 73.6 147 29.3
AL3G15180 Arabidopsis lyrata HOM05D006905 ORTHO05D003398 4.3e-11 72.8 143 26.6
arahy.Tifrunner.gnm1.ann1.PI1FXK Arachis hypogaea HOM05D006905 ORTHO05D003398 4.3e-11 72.8 143 28.7
TPR.G28505 Trifolium pratense HOM05D007525 ORTHO05D003398 4.3e-11 72.8 91 45.1
AT3G04890 Arabidopsis thaliana HOM05D006905 ORTHO05D003398 5.6e-11 72.4 143 28.0
CARHR079160 Cardamine hirsuta HOM05D006905 ORTHO05D003398 5.6e-11 72.4 143 27.3
Mapoly0016s0115 Marchantia polymorpha HOM05D006905 ORTHO05D003398 9.5e-11 71.6 147 29.3
Mapoly0178s0027 Marchantia polymorpha HOM05D006905 ORTHO05D003398 9.5e-11 71.6 147 29.3
Hund22112 Selenicereus undatus HOM05D006905 ORTHO05D003398 1.2e-10 71.2 234 24.4
ATR0737G167 Amborella trichopoda HOM05D006905 ORTHO05D003398 2.1e-10 70.5 205 25.9
vmacro05070 Vaccinium macrocarpon HOM05D006905 ORTHO05D003398 4.7e-10 69.3 223 25.6
QL03p024500 Quercus lobata HOM05D006905 ORTHO05D003398 6.2e-10 68.9 239 28.0
TPR.G11158 Trifolium pratense HOM05D006905 ORTHO05D003398 6.2e-10 68.9 223 24.7
Mapoly0059s0020 Marchantia polymorpha HOM05D006905 ORTHO05D003398 1.4e-09 67.8 147 28.6
BcaC05g30566 Brassica carinata HOM05D006905 ORTHO05D003398 2.3e-09 67.0 143 25.9
BolC5t34896H Brassica oleracea HOM05D006905 ORTHO05D003398 2.3e-09 67.0 216 25.9
A05p42710 Brassica napus HOM05D006905 ORTHO05D003398 3.1e-09 66.6 212 25.5
SEGI_10814 Sequoiadendron giganteum HOM05D006905 ORTHO05D003398 6.8e-09 65.5 224 25.0
AagrBONN_evm.TU.Sc2ySwM_344.4395 Anthoceros agrestis HOM05D006905 ORTHO05D003398 3.4e-08 63.2 158 27.2
MCO13G637 Micromonas commoda HOM05D006905 ORTHO05D003398 4.4e-08 62.8 194 25.8
TPR.G34652 Trifolium pratense HOM05D007525 ORTHO05D003398 4.4e-08 62.8 36 72.2
FAN05G4190 Fragaria x ananassa HOM05D006905 ORTHO05D003398 9.9e-08 61.6 232 24.6
PRCOL_00001703 Prasinoderma coloniale HOM05D007525 ORTHO05D003398 3.7e-07 59.7 153 27.5
CBR_g23481 Chara braunii HOM05D006905 ORTHO05D003398 2.4e-06 57.0 146 26.0
TPR.G20765 Trifolium pratense HOM05D007525 ORTHO05D003398 4.1e-06 56.2 36 63.9
Cre02.g095105 Chlamydomonas reinhardtii HOM05D006905 ORTHO05D003398 7.1e-06 55.5 194 25.3


User provided reference genes

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