Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold43G16290 Striga asiatica HOM05D004444 ORTHO05D005246 7.4e-234 813.5 421 100.0
SGA_v2.0_scaffold232G43497 Striga asiatica HOM05D004444 ORTHO05D005246 3.0e-174 615.5 450 76.7
SalBow6G5617 Salvia bowleyana HOM05D004444 ORTHO05D005246 3.1e-171 605.5 451 74.3
Migut.N01853 Erythranthe guttata HOM05D004444 ORTHO05D005246 3.3e-165 585.5 458 72.9
Nitab4.5_0005808g0020 Nicotiana tabacum HOM05D004444 ORTHO05D005246 6.4e-161 571.2 450 70.9
MSTRG.5072 Avicennia marina HOM05D004444 ORTHO05D005246 8.4e-161 570.9 449 71.9
Peaxi162Scf00082g00116 Petunia axillaris HOM05D004444 ORTHO05D005246 2.4e-160 569.3 450 71.3
GSVIVG01002027001 Vitis vinifera HOM05D004444 ORTHO05D005246 3.2e-160 568.9 453 70.4
Dinv12635 Davidia involucrata HOM05D004444 ORTHO05D005246 6.0e-159 564.7 456 68.9
Cc02_g29660 Coffea canephora HOM05D004444 ORTHO05D005246 5.1e-158 561.6 451 68.3
Nitab4.5_0003481g0120 Nicotiana tabacum HOM05D004444 ORTHO05D005246 6.6e-158 561.2 448 70.8
FvH4_4g37380 Fragaria vesca HOM05D004444 ORTHO05D005246 1.5e-157 560.1 453 69.3
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.5e-157 560.1 453 69.3
Cfa018662 Carpinus fangiana HOM05D004444 ORTHO05D005246 7.3e-157 557.8 452 69.2
PGR044G0398 Punica granatum HOM05D004444 ORTHO05D005246 7.3e-157 557.8 448 68.3
MD13G1000100 Malus domestica HOM05D004444 ORTHO05D005246 1.6e-156 556.6 451 70.1
CAN.G1045.17 Capsicum annuum HOM05D004444 ORTHO05D005246 3.6e-156 555.4 449 69.7
CSS0046171 Camellia sinensis var. sinensis HOM05D004444 ORTHO05D005246 8.1e-156 554.3 459 68.0
QL01p000088 Quercus lobata HOM05D004444 ORTHO05D005246 8.1e-156 554.3 454 67.8
Eucgr.J00322 Eucalyptus grandis HOM05D004444 ORTHO05D005246 1.4e-155 553.5 449 69.0
DCAR_009036 Daucus carota HOM05D004444 ORTHO05D005246 1.8e-155 553.1 452 69.9
Solyc01g096500.3 Solanum lycopersicum HOM05D004444 ORTHO05D005246 4.0e-155 552.0 449 69.3
Sopen01g040230 Solanum pennellii HOM05D004444 ORTHO05D005246 4.0e-155 552.0 449 69.3
TAR374G0400 Trochodendron aralioides HOM05D004444 ORTHO05D005246 4.0e-155 552.0 453 68.4
Cpa.g.sc248.6 Carica papaya HOM05D004444 ORTHO05D005246 5.8e-154 548.1 450 67.8
HanXRQChr01g0023401 Helianthus annuus HOM05D004444 ORTHO05D005246 5.8e-154 548.1 455 66.8
Rhsim02G0256600 Rhododendron simsii HOM05D004444 ORTHO05D005246 5.8e-154 548.1 470 66.2
Thecc.02G151100 Theobroma cacao HOM05D004444 ORTHO05D005246 5.8e-154 548.1 451 67.0
CiPaw.16G000300 Carya illinoinensis HOM05D004444 ORTHO05D005246 7.6e-154 547.7 453 67.5
Prupe.1G584800 Prunus persica HOM05D004444 ORTHO05D005246 7.6e-154 547.7 453 68.2
Potri.010G255600 Populus trichocarpa HOM05D004444 ORTHO05D005246 1.7e-153 546.6 452 66.8
Sc19g0000340 Simmondsia chinensis HOM05D004444 ORTHO05D005246 6.4e-153 544.7 450 67.6
Psat1g052480 Pisum sativum HOM05D004444 ORTHO05D005246 2.4e-152 542.7 449 68.2
TPR.G25204 Trifolium pratense HOM05D004444 ORTHO05D005246 2.4e-152 542.7 449 68.4
Lj2g0009416 Lotus japonicus HOM05D004444 ORTHO05D005246 3.2e-152 542.3 448 67.2
RcHm_v2.0_Chr4g0447291 Rosa chinensis HOM05D004444 ORTHO05D005246 5.4e-152 541.6 450 67.6
Duzib132G0849 Durio zibethinus HOM05D004444 ORTHO05D005246 1.2e-151 540.4 451 66.7
Ca_04130_v3 Cicer arietinum L. HOM05D004444 ORTHO05D005246 3.5e-151 538.9 446 67.5
Manes.11G000400 Manihot esculenta HOM05D004444 ORTHO05D005246 3.5e-151 538.9 452 65.0
Aqoxy5G04401 Aquilegia oxysepala HOM05D004444 ORTHO05D005246 4.6e-151 538.5 453 67.5
Glyma.19G000300 Glycine max HOM05D004444 ORTHO05D005246 7.8e-151 537.7 448 67.2
Glyma.05G000200 Glycine max HOM05D004444 ORTHO05D005246 1.0e-150 537.3 447 67.3
ClCG11G012850 Citrullus lanatus HOM05D004444 ORTHO05D005246 1.3e-150 537.0 452 67.0
CsaV3_5G029250 Cucumis sativus L. HOM05D004444 ORTHO05D005246 1.3e-150 537.0 451 66.3
TWI77G0180 Tripterygium wilfordii HOM05D004444 ORTHO05D005246 1.3e-150 537.0 451 65.4
PSO063G7312 Papaver somniferum HOM05D004444 ORTHO05D005246 3.0e-150 535.8 453 66.9
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 3.9e-150 535.4 449 66.4
Gohir.A12G011300 Gossypium hirsutum HOM05D004444 ORTHO05D005246 5.1e-150 535.0 451 66.1
Atru.chr11.7 Acer truncatum HOM05D004444 ORTHO05D005246 6.6e-150 534.6 450 66.7
Sabra10G0199000 Salix brachista HOM05D004444 ORTHO05D005246 6.6e-150 534.6 451 65.2
CANSAT78G1818 Cannabis sativa HOM05D004444 ORTHO05D005246 8.7e-150 534.3 450 67.1
Duzib248G0301 Durio zibethinus HOM05D004444 ORTHO05D005246 1.1e-149 533.9 451 65.9
EL10Ac3g05121 Beta vulgaris HOM05D004444 ORTHO05D005246 1.5e-149 533.5 454 67.4
ECA248G3474 Erigeron canadensis HOM05D004444 ORTHO05D005246 1.5e-149 533.5 457 66.3
Duzib052G0576 Durio zibethinus HOM05D004444 ORTHO05D005246 1.9e-149 533.1 450 66.0
Gohir.D12G011700 Gossypium hirsutum HOM05D004444 ORTHO05D005246 3.3e-149 532.3 451 65.9
Gohir.D12G011780 Gossypium hirsutum HOM05D004444 ORTHO05D005246 3.3e-149 532.3 451 65.9
Medtr6g004070 Medicago truncatula HOM05D004444 ORTHO05D005246 3.3e-149 532.3 446 66.8
VMungo0464G0300 Vigna mungo HOM05D004444 ORTHO05D005246 3.3e-149 532.3 448 67.0
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 5.6e-149 531.6 441 68.0
TWI74G0409 Tripterygium wilfordii HOM05D004444 ORTHO05D005246 7.3e-149 531.2 451 65.4
Gorai.008G011700 Gossypium raimondii HOM05D004444 ORTHO05D005246 9.6e-149 530.8 451 65.4
Hund09760 Selenicereus undatus HOM05D004444 ORTHO05D005246 9.6e-149 530.8 448 67.0
vmacro18720 Vaccinium macrocarpon HOM05D004444 ORTHO05D005246 1.6e-148 530.0 510 61.2
Hund21081 Selenicereus undatus HOM05D004444 ORTHO05D005246 2.1e-148 529.6 455 66.8
Sed0021880 Sechium edule HOM05D004444 ORTHO05D005246 2.8e-148 529.3 450 65.8
Sed0005704 Sechium edule HOM05D004444 ORTHO05D005246 3.6e-148 528.9 451 65.9
Nn3g18734 Nelumbo nucifera HOM05D004444 ORTHO05D005246 4.8e-148 528.5 453 66.2
Ciclev10014323m.g Citrus clementina HOM05D004444 ORTHO05D005246 8.1e-148 527.7 449 65.5
DCAR_020440 Daucus carota HOM05D004444 ORTHO05D005246 1.5e-146 523.5 449 66.1
Phvul.004G000500 Phaseolus vulgaris HOM05D004444 ORTHO05D005246 1.5e-146 523.5 447 66.0
Potri.008G002100 Populus trichocarpa HOM05D004444 ORTHO05D005246 2.0e-146 523.1 452 64.8
Gorai.013G066500 Gossypium raimondii HOM05D004444 ORTHO05D005246 2.6e-146 522.7 447 65.3
PSO782G3237 Papaver somniferum HOM05D004444 ORTHO05D005246 5.8e-146 521.5 453 66.0
arahy.Tifrunner.gnm1.ann1.U9T50E Arachis hypogaea HOM05D004444 ORTHO05D005246 1.3e-145 520.4 450 65.8
THA.LOC104800589 Tarenaya hassleriana HOM05D004444 ORTHO05D005246 1.3e-145 520.4 454 64.3
Gohir.D13G058925 Gossypium hirsutum HOM05D004444 ORTHO05D005246 2.2e-145 519.6 447 65.1
arahy.Tifrunner.gnm1.ann1.8PY7V8 Arachis hypogaea HOM05D004444 ORTHO05D005246 1.1e-144 517.3 450 65.3
THA.LOC104818390 Tarenaya hassleriana HOM05D004444 ORTHO05D005246 1.4e-144 516.9 452 64.6
Oeu013089.1 Olea europaea HOM05D004444 ORTHO05D005246 3.2e-144 515.8 429 69.7
Ah.04g157380 Amaranthus hybridus HOM05D004444 ORTHO05D005246 4.2e-144 515.4 479 62.2
Gorai.012G137000 Gossypium raimondii HOM05D004444 ORTHO05D005246 1.2e-143 513.8 450 64.7
Lsat_1_v5_gn_1_74220 Lactuca sativa HOM05D004444 ORTHO05D005246 2.7e-143 512.7 452 65.0
Gohir.A04G110200 Gossypium hirsutum HOM05D004444 ORTHO05D005246 3.5e-143 512.3 450 64.2
Haze_17392 Corylus avellana HOM05D004444 ORTHO05D005246 7.9e-143 511.1 555 55.7
HanXRQChr11g0343011 Helianthus annuus HOM05D004444 ORTHO05D005246 3.0e-142 509.2 455 64.8
MBI04_g37105_MAGBIO Magnolia biondii HOM05D004444 ORTHO05D005246 1.1e-139 500.7 517 58.6
Thhalv10003687m.g Eutrema salsugineum HOM05D004444 ORTHO05D005246 2.4e-139 499.6 452 61.5
C02p60850 Brassica napus HOM05D004444 ORTHO05D005246 9.0e-139 497.7 452 61.1
A02p40960 Brassica napus HOM05D004444 ORTHO05D005246 1.2e-138 497.3 450 61.6
Aa31LG11G2870 Aethionema arabicum HOM05D004444 ORTHO05D005246 1.5e-138 496.9 450 61.3
AL6G34740 Arabidopsis lyrata HOM05D004444 ORTHO05D005246 1.5e-138 496.9 452 61.9
BolC2t12137H Brassica oleracea HOM05D004444 ORTHO05D005246 1.5e-138 496.9 451 61.2
Sp2g23710 Schrenkiella parvula HOM05D004444 ORTHO05D005246 2.6e-138 496.1 450 60.9
Sp6g34510 Schrenkiella parvula HOM05D004444 ORTHO05D005246 5.8e-138 495.0 457 61.5
BraA02t09044Z Brassica rapa HOM05D004444 ORTHO05D005246 9.9e-138 494.2 451 61.2
CARHR190060 Cardamine hirsuta HOM05D004444 ORTHO05D005246 6.4e-137 491.5 451 61.0
BcaNung03734 Brassica carinata HOM05D004444 ORTHO05D005246 8.4e-137 491.1 452 59.7
Carub.0006s2125 Capsella rubella HOM05D004444 ORTHO05D005246 3.2e-136 489.2 452 61.3
AT5G23450 Arabidopsis thaliana HOM05D004444 ORTHO05D005246 7.1e-136 488.0 447 61.3
MBI12_g01745_MAGBIO Magnolia biondii HOM05D004444 ORTHO05D005246 7.1e-136 488.0 449 65.0
Lju50C3G3 Lonicera japonica HOM05D004444 ORTHO05D005246 6.0e-135 485.0 410 67.8
BolC7t44936H Brassica oleracea HOM05D004444 ORTHO05D005246 7.9e-135 484.6 454 59.5
C07p44100 Brassica napus HOM05D004444 ORTHO05D005246 2.3e-134 483.0 453 59.4
A06p34440 Brassica napus HOM05D004444 ORTHO05D005246 2.8e-132 476.1 453 58.7
BraA06t26373Z Brassica rapa HOM05D004444 ORTHO05D005246 4.8e-132 475.3 455 58.7
BcaNung03855 Brassica carinata HOM05D004444 ORTHO05D005246 1.8e-131 473.4 453 58.3
TAR375G0344 Trochodendron aralioides HOM05D004444 ORTHO05D005246 2.0e-130 469.9 419 65.2
SHI21195 Sapria himalayana HOM05D004444 ORTHO05D005246 1.9e-128 463.4 438 60.5
Zm00001eb427640 Zea mays HOM05D004444 ORTHO05D005246 4.6e-127 458.8 452 60.2
ATR0810G148 Amborella trichopoda HOM05D004444 ORTHO05D005246 2.3e-126 456.4 462 60.0
Os10g0516800 Oryza sativa ssp. japonica HOM05D004444 ORTHO05D005246 5.7e-125 451.8 450 58.7
Os04g0541500 Oryza sativa ssp. japonica HOM05D004444 ORTHO05D005246 7.4e-125 451.4 457 58.4
SEGI_02431 Sequoiadendron giganteum HOM05D004444 ORTHO05D005246 1.1e-123 447.6 458 57.6
FAN07G0307 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.8e-116 422.9 351 68.4
Zm00001eb043540 Zea mays HOM05D004444 ORTHO05D005246 2.8e-116 422.9 450 56.2
MD16G1005800 Malus domestica HOM05D004444 ORTHO05D005246 5.5e-112 408.7 349 67.3
HPP92_022710 Vanilla planifolia HOM05D004444 ORTHO05D005246 2.7e-111 406.4 441 54.6
Oeu064128.1 Olea europaea HOM05D004444 ORTHO05D005246 8.8e-110 401.4 345 68.1
CDE09G0893 Ceratophyllum demersum HOM05D004444 ORTHO05D005246 2.7e-95 353.2 393 55.2
AUR62028126 Chenopodium quinoa HOM05D004444 ORTHO05D005246 8.0e-95 351.7 323 63.2
AUR62005937 Chenopodium quinoa HOM05D004444 ORTHO05D005246 4.0e-94 349.4 323 63.2
Actinidia33639 Actinidia chinensis HOM05D004444 ORTHO05D005246 2.0e-93 347.1 289 65.4
HPP92_022588 Vanilla planifolia HOM05D004444 ORTHO05D005246 3.3e-93 346.3 405 54.6
HPP92_008908 Vanilla planifolia HOM05D004444 ORTHO05D005246 2.7e-90 336.7 344 60.8
Gohir.D04G150400 Gossypium hirsutum HOM05D004444 ORTHO05D005246 1.7e-89 334.0 319 61.8
unitig_61.g26366 Utricularia gibba HOM05D004444 ORTHO05D005246 3.4e-77 293.1 249 65.5
Mapoly0012s0022 Marchantia polymorpha HOM05D004444 ORTHO05D005246 2.4e-75 287.0 455 41.3
CDE11G0399 Ceratophyllum demersum HOM05D004444 ORTHO05D005246 1.9e-72 277.3 246 61.4
SMO239G0136 Selaginella moellendorffii HOM05D004444 ORTHO05D005246 1.2e-69 268.1 452 40.3
Pp3c2_22010 Physcomitrium patens HOM05D004444 ORTHO05D005246 2.0e-69 267.3 439 38.5
arahy.Tifrunner.gnm1.ann1.VXL9CA Arachis hypogaea HOM05D004444 ORTHO05D005246 5.0e-65 252.7 224 66.5
Zm00001eb172780 Zea mays HOM05D004444 ORTHO05D005246 2.0e-53 214.2 437 33.4
Os08g0152700 Oryza sativa ssp. japonica HOM05D004444 ORTHO05D005246 3.5e-50 203.4 438 32.6
Zm00001eb197100 Zea mays HOM05D004444 ORTHO05D005246 1.4e-43 181.4 266 50.4
QL12p027399 Quercus lobata HOM05D004444 ORTHO05D005246 4.6e-42 176.4 168 58.3
Oeu006789.1 Olea europaea HOM05D004444 ORTHO05D005246 6.4e-36 156.0 84 90.5
Pp3c1_15060 Physcomitrium patens HOM05D004444 ORTHO05D005246 2.5e-32 144.1 240 38.8
CDE11G1250 Ceratophyllum demersum HOM05D004444 ORTHO05D005246 4.3e-32 143.3 132 62.9
CBR_g39941 Chara braunii HOM05D004444 ORTHO05D005246 9.0e-30 135.6 119 52.9
unitig_61.g26367 Utricularia gibba HOM05D004444 ORTHO05D005246 3.8e-28 130.2 88 68.2
Zm00001eb242540 Zea mays HOM05D004444 ORTHO05D005246 9.0e-22 109.0 119 55.5
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 8.7e-17 92.4 50 90.0
Hma1.2p1_0548F.1_g176670 Hydrangea macrophylla HOM05D004444 ORTHO05D005246 3.1e-14 84.0 50 80.0
Hma1.2p1_0185F.1_g081480 Hydrangea macrophylla HOM05D004444 ORTHO05D005246 6.9e-14 82.8 49 81.6
CBR_g39942 Chara braunii HOM05D004444 ORTHO05D005246 1.3e-12 78.6 63 61.9
HPP92_028194 Vanilla planifolia HOM05D004444 ORTHO05D005246 5.5e-11 73.2 43 74.4
SEGI_30817 Sequoiadendron giganteum HOM05D004444 ORTHO05D005246 1.0e-09 68.9 50 62.0
CDE05G1825 Ceratophyllum demersum HOM05D004176 ORTHO05D004845 1.4e-06 58.5 107 28.0


User provided reference genes

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