Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold439G51638 Striga asiatica HOM05D004177 ORTHO05D004826 1.0e-122 443.4 210 100.0
SGA_v2.0_scaffold62G21577 Striga asiatica HOM05D004177 ORTHO05D004826 1.3e-90 336.7 202 81.2
SalBow6G4427 Salvia bowleyana HOM05D004177 ORTHO05D004826 4.7e-88 328.2 202 77.7
GSVIVG01008468001 Vitis vinifera HOM05D004177 ORTHO05D004826 4.7e-88 328.2 202 77.7
ECA233G2252 Erigeron canadensis HOM05D004177 ORTHO05D004826 2.3e-87 325.9 202 76.7
Phvul.004G172700 Phaseolus vulgaris HOM05D004177 ORTHO05D004826 3.1e-87 325.5 202 76.2
VMungo0464G2175 Vigna mungo HOM05D004177 ORTHO05D004826 3.1e-87 325.5 202 76.2
Rhsim03G0234600 Rhododendron simsii HOM05D004177 ORTHO05D004826 4.0e-87 325.1 202 77.7
Dinv42291 Davidia involucrata HOM05D004177 ORTHO05D004826 6.8e-87 324.3 202 77.2
HanXRQChr09g0263461 Helianthus annuus HOM05D004177 ORTHO05D004826 8.9e-87 323.9 202 77.2
Lalb_Chr24g0393931 Lupinus albus HOM05D004177 ORTHO05D004826 8.9e-87 323.9 202 76.2
Psat7g081120 Pisum sativum HOM05D004177 ORTHO05D004826 8.9e-87 323.9 202 76.2
Actinidia29891 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.2e-86 323.6 202 77.2
MSTRG.19533 Avicennia marina HOM05D004177 ORTHO05D004826 1.2e-86 323.6 203 77.8
TPR.G38463 Trifolium pratense HOM05D004177 ORTHO05D004826 1.2e-86 323.6 202 75.7
Cfa003130 Carpinus fangiana HOM05D004177 ORTHO05D004826 1.5e-86 323.2 202 76.7
Migut.J00439 Erythranthe guttata HOM05D004177 ORTHO05D004826 1.5e-86 323.2 202 77.2
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea HOM05D004177 ORTHO05D004826 2.0e-86 322.8 202 75.7
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea HOM05D004177 ORTHO05D004826 2.0e-86 322.8 202 75.7
Glyma.07G127600 Glycine max HOM05D004177 ORTHO05D004826 3.4e-86 322.0 202 75.7
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 3.4e-86 322.0 202 75.2
Aqoxy2G03855 Aquilegia oxysepala HOM05D004177 ORTHO05D004826 4.4e-86 321.6 202 76.2
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 4.4e-86 321.6 202 76.2
Nn6g35409 Nelumbo nucifera HOM05D004177 ORTHO05D004826 4.4e-86 321.6 202 76.2
TAR636G0014 Trochodendron aralioides HOM05D004177 ORTHO05D004826 4.4e-86 321.6 202 76.2
vmacro00113 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 4.4e-86 321.6 202 76.7
Dinv36734 Davidia involucrata HOM05D004177 ORTHO05D004826 5.8e-86 321.2 202 75.7
Lsat_1_v5_gn_8_88081 Lactuca sativa HOM05D004177 ORTHO05D004826 7.5e-86 320.9 202 75.7
CANSAT11G0575 Cannabis sativa HOM05D004177 ORTHO05D004826 9.8e-86 320.5 202 75.2
MELO3C005126.2 Cucumis melo HOM05D004177 ORTHO05D004826 9.8e-86 320.5 202 74.3
Lj1g0019759 Lotus japonicus HOM05D004177 ORTHO05D004826 1.3e-85 320.1 202 75.7
Ciclev10008698m.g Citrus clementina HOM05D004177 ORTHO05D004826 2.2e-85 319.3 202 75.2
CsaV3_5G024780 Cucumis sativus L. HOM05D004177 ORTHO05D004826 2.9e-85 318.9 202 73.8
Ca_18171_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 3.7e-85 318.5 202 74.8
ECA236G1557 Erigeron canadensis HOM05D004177 ORTHO05D004826 4.9e-85 318.2 202 73.8
Gohir.D10G201600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 4.9e-85 318.2 202 74.3
THA.LOC104816571 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 4.9e-85 318.2 202 74.8
THA.LOC104826863 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 4.9e-85 318.2 202 75.2
Atru.chr7.1532 Acer truncatum HOM05D004177 ORTHO05D004826 6.4e-85 317.8 202 75.2
Actinidia25277 Actinidia chinensis HOM05D004177 ORTHO05D004826 8.3e-85 317.4 202 73.8
Ah.09g228420 Amaranthus hybridus HOM05D004177 ORTHO05D004826 1.1e-84 317.0 202 73.8
BcaC06g32302 Brassica carinata HOM05D004177 ORTHO05D004826 1.1e-84 317.0 202 75.2
C09p70810 Brassica napus HOM05D004177 ORTHO05D004826 1.1e-84 317.0 202 75.2
CiPaw.03G219400 Carya illinoinensis HOM05D004177 ORTHO05D004826 1.1e-84 317.0 202 74.3
AUR62007842 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.1e-84 317.0 202 75.2
Gohir.A10G194500 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.1e-84 317.0 202 73.8
QL02p063435 Quercus lobata HOM05D004177 ORTHO05D004826 1.1e-84 317.0 202 74.3
unitig_27.g24734 Utricularia gibba HOM05D001806 ORTHO05D004826 1.1e-84 317.0 203 75.9
Gorai.011G226300 Gossypium raimondii HOM05D004177 ORTHO05D004826 1.4e-84 316.6 202 73.8
SEGI_08410 Sequoiadendron giganteum HOM05D004177 ORTHO05D004826 1.4e-84 316.6 202 74.8
Cc06_g10990 Coffea canephora HOM05D004177 ORTHO05D004826 1.9e-84 316.2 202 75.2
Manes.15G104600 Manihot esculenta HOM05D004177 ORTHO05D004826 1.9e-84 316.2 202 74.3
PSO210G7296 Papaver somniferum HOM05D004177 ORTHO05D004826 1.9e-84 316.2 202 74.3
BraA02t04865Z Brassica rapa HOM05D004177 ORTHO05D004826 2.4e-84 315.8 202 74.8
AUR62003036 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.4e-84 315.8 202 75.2
Duzib114G0142 Durio zibethinus HOM05D004177 ORTHO05D004826 2.4e-84 315.8 202 73.8
Sp6g36980 Schrenkiella parvula HOM05D004177 ORTHO05D004826 2.4e-84 315.8 202 74.8
Sc14g0000820 Simmondsia chinensis HOM05D004177 ORTHO05D004826 2.4e-84 315.8 203 75.4
AL6G15840 Arabidopsis lyrata HOM05D004177 ORTHO05D004826 3.2e-84 315.5 202 74.3
MBI04_g06223_MAGBIO Magnolia biondii HOM05D004177 ORTHO05D004826 3.2e-84 315.5 211 73.5
Potri.003G186900 Populus trichocarpa HOM05D004177 ORTHO05D004826 3.2e-84 315.5 202 74.3
AT5G05920 Arabidopsis thaliana HOM05D004177 ORTHO05D004826 4.1e-84 315.1 202 73.8
MELO3C025268.2 Cucumis melo HOM05D004177 ORTHO05D004826 4.1e-84 315.1 202 74.3
HanXRQChr04g0112631 Helianthus annuus HOM05D004177 ORTHO05D004826 4.1e-84 315.1 203 74.4
Prupe.7G214500 Prunus persica HOM05D004177 ORTHO05D004826 4.1e-84 315.1 202 73.8
Sabra03G0136900 Salix brachista HOM05D004177 ORTHO05D004826 4.1e-84 315.1 202 73.8
PSO210G0074 Papaver somniferum HOM05D004177 ORTHO05D004826 5.4e-84 314.7 202 74.3
TWI12G1142 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 5.4e-84 314.7 202 74.3
CiPaw.12G022300 Carya illinoinensis HOM05D004177 ORTHO05D004826 9.2e-84 313.9 202 73.8
Gorai.011G226400 Gossypium raimondii HOM05D004177 ORTHO05D004826 9.2e-84 313.9 202 73.3
PGR142G0935 Punica granatum HOM05D004177 ORTHO05D004826 9.2e-84 313.9 202 73.3
Thecc.10G003500 Theobroma cacao HOM05D004177 ORTHO05D004826 9.2e-84 313.9 202 73.3
BcaB05g21688 Brassica carinata HOM05D004177 ORTHO05D004826 1.2e-83 313.5 202 73.8
AUR62027470 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.2e-83 313.5 202 73.8
CARHR207300 Cardamine hirsuta HOM05D004177 ORTHO05D004826 1.6e-83 313.2 202 73.8
Eucgr.C00926 Eucalyptus grandis HOM05D004177 ORTHO05D004826 1.6e-83 313.2 202 73.3
Thhalv10013870m.g Eutrema salsugineum HOM05D004177 ORTHO05D004826 1.6e-83 313.2 202 73.8
Gohir.D10G201700 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.6e-83 313.2 202 73.3
MD15G1202800 Malus domestica HOM05D004177 ORTHO05D004826 2.0e-83 312.8 202 73.3
BolC2t06219H Brassica oleracea HOM05D004177 ORTHO05D004826 2.7e-83 312.4 202 73.3
TWI09G1015 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 4.6e-83 311.6 202 72.8
A10p30370 Brassica napus HOM05D004177 ORTHO05D004826 6.0e-83 311.2 203 74.4
Oeu052128.1 Olea europaea HOM05D004177 ORTHO05D004826 7.8e-83 310.8 203 74.9
RcHm_v2.0_Chr2g0092611 Rosa chinensis HOM05D004177 ORTHO05D004826 7.8e-83 310.8 202 72.8
TPR.G9556 Trifolium pratense HOM05D004177 ORTHO05D004826 7.8e-83 310.8 203 73.9
Gohir.A10G194600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 1.0e-82 310.5 202 72.8
ClCG01G007700 Citrullus lanatus HOM05D004177 ORTHO05D004826 1.3e-82 310.1 212 71.2
MD02G1073000 Malus domestica HOM05D004177 ORTHO05D004826 1.7e-82 309.7 202 72.8
Aa31LG11G6950 Aethionema arabicum HOM05D004177 ORTHO05D004826 3.9e-82 308.5 202 73.3
Ca_14076_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 5.0e-82 308.1 202 73.3
Nitab4.5_0007963g0020 Nicotiana tabacum HOM05D004177 ORTHO05D004826 1.1e-81 307.0 211 71.6
Sed0022999 Sechium edule HOM05D004177 ORTHO05D004826 1.1e-81 307.0 202 71.8
SHI02807 Sapria himalayana HOM05D004177 ORTHO05D004826 1.9e-81 306.2 202 70.8
FvH4_1g06830 Fragaria vesca HOM05D004177 ORTHO05D004826 2.5e-81 305.8 202 71.8
Lsat_1_v5_gn_8_88021 Lactuca sativa HOM05D004177 ORTHO05D004826 3.3e-81 305.4 202 71.8
BolC9t59847H Brassica oleracea HOM05D004177 ORTHO05D004826 5.6e-81 304.7 223 68.2
Carub.0006s0480 Capsella rubella HOM05D004177 ORTHO05D004826 5.6e-81 304.7 202 72.3
Solyc02g080800.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 7.3e-81 304.3 211 71.1
Sopen02g025490 Solanum pennellii HOM05D004177 ORTHO05D004826 7.3e-81 304.3 211 71.1
BraA10t45083Z Brassica rapa HOM05D004177 ORTHO05D004826 1.2e-80 303.5 216 69.4
Nitab4.5_0002695g0050 Nicotiana tabacum HOM05D004177 ORTHO05D004826 3.6e-80 302.0 211 70.1
CAN.G1014.11 Capsicum annuum HOM05D004177 ORTHO05D004826 4.7e-80 301.6 211 70.1
Haze_25874 Corylus avellana HOM05D004177 ORTHO05D004826 1.1e-79 300.4 245 62.9
Pp3c2_9490 Physcomitrium patens HOM05D004177 ORTHO05D004826 2.6e-78 295.8 202 69.3
Os03g0740600 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 3.4e-78 295.4 202 68.3
Sopen02g025480 Solanum pennellii HOM05D004177 ORTHO05D004826 3.4e-78 295.4 208 69.2
Solyc02g080790.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 2.2e-77 292.7 208 68.3
HPP92_011031 Vanilla planifolia HOM05D004177 ORTHO05D004826 3.7e-77 292.0 202 69.8
FAN28G1160 Fragaria x ananassa HOM05D004177 ORTHO05D004826 6.4e-77 291.2 214 66.8
HPP92_016636 Vanilla planifolia HOM05D004177 ORTHO05D004826 6.4e-77 291.2 202 69.8
AagrBONN_evm.TU.Sc2ySwM_344.1392 Anthoceros agrestis HOM05D004177 ORTHO05D004826 8.3e-77 290.8 202 67.3
vmacro06273 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 2.4e-76 289.3 289 54.7
ATR0789G091 Amborella trichopoda HOM05D004177 ORTHO05D004826 7.1e-76 287.7 202 70.3
HPP92_001732 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.2e-75 287.0 202 65.8
DCAR_012005 Daucus carota HOM05D004177 ORTHO05D004826 2.1e-75 286.2 202 69.8
FAN26G2529 Fragaria x ananassa HOM05D004177 ORTHO05D004826 2.1e-75 286.2 210 67.1
CSS0022162 Camellia sinensis var. sinensis HOM05D004177 ORTHO05D004826 3.5e-75 285.4 221 65.6
Mapoly0001s0219 Marchantia polymorpha HOM05D004177 ORTHO05D004826 1.7e-74 283.1 202 67.3
AagrBONN_evm.TU.Sc2ySwM_344.3440 Anthoceros agrestis HOM05D004177 ORTHO05D004826 1.1e-73 280.4 202 64.9
PSO596G0001 Papaver somniferum HOM05D004177 ORTHO05D004826 1.1e-73 280.4 202 67.3
SMO337G0022 Selaginella moellendorffii HOM05D004177 ORTHO05D004826 1.1e-73 280.4 202 64.9
HPP92_014582 Vanilla planifolia HOM05D004177 ORTHO05D004826 2.5e-73 279.3 202 64.9
Zm00001eb085620 Zea mays HOM05D004177 ORTHO05D004826 1.6e-72 276.6 219 61.2
Zm00001eb215220 Zea mays HOM05D004177 ORTHO05D004826 1.6e-72 276.6 202 65.3
EL10Ac6g14643 Beta vulgaris HOM05D004177 ORTHO05D004826 1.2e-70 270.4 202 66.3
Cre01.g018950 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 1.7e-69 266.5 202 61.4
PRCOL_00001978 Prasinoderma coloniale HOM05D004177 ORTHO05D004826 1.4e-68 263.5 202 60.9
MCO16G096 Micromonas commoda HOM05D004177 ORTHO05D004826 9.2e-68 260.8 203 62.6
Cre08.g369800 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 1.6e-67 260.0 202 57.9
CDE04G2922 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 9.6e-65 250.8 130 86.9
COL.COLO4_19342 Corchorus olitorius HOM05D004177 ORTHO05D004826 4.7e-64 248.4 202 61.4
AUR62031232 Chenopodium quinoa HOM05D004177 ORTHO05D004826 6.2e-64 248.1 202 61.9
Cpa.g.sc19.251 Carica papaya HOM05D004177 ORTHO05D004826 1.8e-63 246.5 202 62.4
FAN19G3030 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.3e-61 240.4 202 60.4
Hund18418 Selenicereus undatus HOM05D004177 ORTHO05D004826 3.8e-61 238.8 243 54.3
FAN23G1990 Fragaria x ananassa HOM05D004177 ORTHO05D004826 5.4e-60 235.0 202 58.4
Haze_27186 Corylus avellana HOM05D004177 ORTHO05D004826 1.0e-58 230.7 202 55.9
FAN26G0736 Fragaria x ananassa HOM05D004177 ORTHO05D004826 5.6e-57 224.9 202 59.4
AagrBONN_evm.TU.Sc2ySwM_362.473 Anthoceros agrestis HOM05D004177 ORTHO05D004826 3.0e-50 202.6 119 77.3
Peaxi162Scf00178g01719 Petunia axillaris HOM05D004177 ORTHO05D004826 1.1e-47 194.1 111 83.8
Sed0017389 Sechium edule HOM05D004177 ORTHO05D004826 4.6e-43 178.7 135 60.7
HanXRQChr04g0126441 Helianthus annuus HOM05D004177 ORTHO05D004826 4.8e-40 168.7 86 93.0
CBR_g31495 Chara braunii HOM05D004177 ORTHO05D004826 2.4e-39 166.4 135 57.8
HPP92_016662 Vanilla planifolia HOM05D004177 ORTHO05D004826 5.5e-36 155.2 87 80.5
Nn4g24829 Nelumbo nucifera HOM05D004177 ORTHO05D004826 5.1e-34 148.7 117 60.7
Os09g0421100 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 1.5e-33 147.1 202 43.1
HanXRQChr13g0409461 Helianthus annuus HOM05D004177 ORTHO05D004826 1.2e-30 137.5 86 79.1
Oeu062209.1 Olea europaea HOM05D004177 ORTHO05D004826 7.6e-30 134.8 98 74.5
Oeu062208.1 Olea europaea HOM05D004177 ORTHO05D004826 1.3e-29 134.0 98 73.5
Oeu062213.1 Olea europaea HOM05D004177 ORTHO05D004826 1.7e-29 133.7 98 73.5
SGA_v2.0_scaffold439G51649 Striga asiatica HOM05D004177 ORTHO05D004826 1.4e-28 130.6 100 67.0
Oeu062211.1 Olea europaea HOM05D004177 ORTHO05D004826 2.5e-28 129.8 97 71.1
Oeu039826.4 Olea europaea HOM05D002851 ORTHO05D003084 3.0e-26 122.9 69 87.0
Actinidia03786 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.8e-23 113.6 63 87.3
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 3.3e-17 92.8 91 54.9
Nn4g24830 Nelumbo nucifera HOM05D004177 ORTHO05D004826 1.9e-12 77.0 36 91.7
CAN.G744.9 Capsicum annuum HOM05D004177 ORTHO05D004826 3.6e-11 72.8 44 72.7
AagrBONN_evm.TU.Sc2ySwM_117.1724 Anthoceros agrestis HOM05D004177 ORTHO05D004826 3.9e-10 69.3 39 66.7
Pp3c1_32420 Physcomitrium patens HOM05D004177 ORTHO05D004826 7.4e-09 65.1 39 69.2
RcHm_v2.0_Chr6g0296851 Rosa chinensis HOM05D004177 ORTHO05D004826 2.8e-08 63.2 32 90.6
Medtr8g079080 Medicago truncatula HOM05D004177 ORTHO05D004826 3.7e-08 62.8 41 70.7
Actinidia39745 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.1e-07 61.2 32 87.5
Oeu056107.1 Olea europaea HOM05D004177 ORTHO05D004826 4.5e-06 55.8 37 73.0


User provided reference genes

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