Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16152 Striga asiatica HOM05D007427 ORTHO05D006413 1.1e-36 157.1 87 100.0
MSTRG.17537 Avicennia marina HOM05D007427 ORTHO05D006413 2.0e-11 73.2 87 57.5
MSTRG.21440 Avicennia marina HOM05D007427 ORTHO05D006413 2.6e-11 72.8 71 62.0
SGA_v2.0_scaffold1G00704 Striga asiatica HOM05D007427 ORTHO05D006413 1.7e-10 70.1 71 63.4
Migut.N02250 Erythranthe guttata HOM05D007427 ORTHO05D006413 3.8e-10 68.9 78 59.0
MSTRG.12503 Avicennia marina HOM05D007427 ORTHO05D006413 8.5e-10 67.8 87 55.2
SGA_v2.0_scaffold8G04664 Striga asiatica HOM05D007427 ORTHO05D006413 8.5e-10 67.8 69 62.3
DCAR_012627 Daucus carota HOM05D007427 ORTHO05D006413 1.1e-09 67.4 81 53.1
ECA236G2240 Erigeron canadensis HOM05D007427 ORTHO05D006413 1.1e-09 67.4 73 54.8
CiPaw.04G107700 Carya illinoinensis HOM05D007427 ORTHO05D006413 1.4e-09 67.0 76 52.6
CiPaw.03G152700 Carya illinoinensis HOM05D007427 ORTHO05D006413 2.5e-09 66.2 74 54.1
arahy.Tifrunner.gnm1.ann1.KG3A2Z Arachis hypogaea HOM05D007427 ORTHO05D006413 5.5e-09 65.1 69 59.4
Duzib138G0914 Durio zibethinus HOM05D007427 ORTHO05D006413 7.2e-09 64.7 64 64.1
Lsat_1_v5_gn_9_11040 Lactuca sativa HOM05D047643 ORTHO05D006413 1.6e-08 63.5 85 54.1
CANSAT01G2272 Cannabis sativa HOM05D007427 ORTHO05D006413 6.1e-08 61.6 81 49.4
Lj1g0018605 Lotus japonicus HOM05D007427 ORTHO05D006413 7.9e-08 61.2 68 60.3
Glyma.03G170800 Glycine max HOM05D007427 ORTHO05D006413 1.0e-07 60.8 69 59.4
Thecc.01G231700 Theobroma cacao HOM05D007427 ORTHO05D006413 1.0e-07 60.8 67 56.7
unitig_8.g3079 Utricularia gibba HOM05D007427 ORTHO05D006413 1.4e-07 60.5 81 51.9
Actinidia23744 Actinidia chinensis HOM05D007427 ORTHO05D006413 3.0e-07 59.3 62 56.5
Glyma.03G170900 Glycine max HOM05D007427 ORTHO05D006413 3.0e-07 59.3 58 60.3
Glyma.19G171900 Glycine max HOM05D007427 ORTHO05D006413 3.0e-07 59.3 67 59.7
Phvul.001G168900 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 3.0e-07 59.3 58 62.1
Rhsim13G0042300 Rhododendron simsii HOM05D007427 ORTHO05D006413 3.0e-07 59.3 68 54.4
CiPaw.04G107800 Carya illinoinensis HOM05D007427 ORTHO05D006413 3.9e-07 58.9 65 58.5
COL.COLO4_17317 Corchorus olitorius HOM05D007427 ORTHO05D006413 3.9e-07 58.9 64 57.8
VMungo1383G3325 Vigna mungo HOM05D007427 ORTHO05D006413 3.9e-07 58.9 59 57.6
Migut.D00508 Erythranthe guttata HOM05D007427 ORTHO05D006413 6.7e-07 58.2 60 58.3
Psat3g049800 Pisum sativum HOM05D007427 ORTHO05D006413 8.8e-07 57.8 69 55.1
SalBow4G2254 Salvia bowleyana HOM05D007427 ORTHO05D006413 8.8e-07 57.8 64 56.2
Sed0020523 Sechium edule HOM05D007427 ORTHO05D006413 1.1e-06 57.4 59 55.9
Medtr7g099670 Medicago truncatula HOM05D007427 ORTHO05D006413 1.5e-06 57.0 68 52.9
Thecc.01G231600 Theobroma cacao HOM05D007427 ORTHO05D006413 1.5e-06 57.0 72 51.4
AL7G23430 Arabidopsis lyrata HOM05D008344 ORTHO05D006413 2.0e-06 56.6 86 55.8
A01p08960 Brassica napus HOM05D008344 ORTHO05D011034 2.0e-06 56.6 87 51.7
CSS0029156 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 2.0e-06 56.6 66 56.1
C01p10500 Brassica napus HOM05D008344 ORTHO05D011034 2.5e-06 56.2 87 51.7
BraA01t00842Z Brassica rapa HOM05D008344 ORTHO05D011034 2.5e-06 56.2 87 51.7
CSS0036288 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 2.5e-06 56.2 66 56.1
CsaV3_7G025650 Cucumis sativus L. HOM05D007427 ORTHO05D006413 2.5e-06 56.2 59 54.2
Gohir.D07G160600 Gossypium hirsutum HOM05D007427 ORTHO05D006413 2.5e-06 56.2 72 44.4
Gohir.D08G211500 Gossypium hirsutum HOM05D007427 ORTHO05D006413 2.5e-06 56.2 93 45.2
Hma1.2p1_1858F.1_g305540 Hydrangea macrophylla HOM05D007427 ORTHO05D006413 2.5e-06 56.2 108 43.5
Carub.0007s1161 Capsella rubella HOM05D008344 ORTHO05D006413 3.3e-06 55.8 86 55.8
Gohir.A07G154300 Gossypium hirsutum HOM05D007427 ORTHO05D006413 3.3e-06 55.8 72 47.2
RcHm_v2.0_Chr6g0285411 Rosa chinensis HOM05D007427 ORTHO05D006413 3.3e-06 55.8 76 55.3
BcaNung00447 Brassica carinata HOM05D008344 ORTHO05D006413 4.3e-06 55.5 76 53.9
Gorai.004G224800 Gossypium raimondii HOM05D007427 ORTHO05D006413 4.3e-06 55.5 93 45.2
QL09p044390 Quercus lobata HOM05D007427 ORTHO05D006413 4.3e-06 55.5 74 51.4
unitig_699.g19329 Utricularia gibba HOM05D036701 ORTHO05D006413 4.3e-06 55.5 85 50.6
Ciclev10022672m.g Citrus clementina HOM05D007427 ORTHO05D006413 5.7e-06 55.1 81 48.1
COL.COLO4_28358 Corchorus olitorius HOM05D007427 ORTHO05D006413 5.7e-06 55.1 65 47.7
PSO017G4218 Papaver somniferum HOM05D007427 ORTHO05D006413 5.7e-06 55.1 61 54.1
BolC1t01011H Brassica oleracea HOM05D008344 ORTHO05D006413 7.4e-06 54.7 87 50.6
Ciclev10022773m.g Citrus clementina HOM05D007427 ORTHO05D006413 7.4e-06 54.7 76 48.7
Lalb_Chr01g0019331 Lupinus albus HOM05D007427 ORTHO05D006413 7.4e-06 54.7 63 52.4
Lalb_Chr25g0289621 Lupinus albus HOM05D007427 ORTHO05D006413 7.4e-06 54.7 62 51.6
unitig_8.g4625 Utricularia gibba HOM05D036701 ORTHO05D006413 7.4e-06 54.7 86 47.7


User provided reference genes

Program Settings