Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16138 Striga asiatica HOM05D004856 ORTHO05D005710 2.0e-48 195.7 117 100.0
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 6.4e-18 94.4 49 93.9
MSTRG.21688 Avicennia marina HOM05D004856 ORTHO05D005710 1.1e-12 77.0 51 74.5
SGA_v2.0_scaffold376G50285 Striga asiatica HOM05D004856 ORTHO05D005710 2.3e-12 75.9 51 76.5
Oeu014942.1 Olea europaea HOM05D004856 ORTHO05D005710 6.8e-12 74.3 51 74.5
SalBow3G3328 Salvia bowleyana HOM05D004856 ORTHO05D005710 2.0e-11 72.8 51 68.6
Lalb_Chr02g0146841 Lupinus albus HOM05D004856 ORTHO05D005710 4.4e-11 71.6 54 63.0
Oeu047395.1 Olea europaea HOM05D004856 ORTHO05D005710 5.8e-11 71.2 51 72.5
CAN.G100.82 Capsicum annuum HOM05D004856 ORTHO05D005710 1.3e-10 70.1 51 62.7
Solyc01g079410.3 Solanum lycopersicum HOM05D004856 ORTHO05D005710 1.3e-10 70.1 51 62.7
PGSC0003DMG400009011 Solanum tuberosum HOM05D004856 ORTHO05D005710 1.3e-10 70.1 51 64.7
Migut.D00081 Erythranthe guttata HOM05D004856 ORTHO05D005710 1.7e-10 69.7 51 66.7
Nitab4.5_0003540g0060 Nicotiana tabacum HOM05D004856 ORTHO05D005710 2.2e-10 69.3 51 64.7
Nitab4.5_0005458g0010 Nicotiana tabacum HOM05D004856 ORTHO05D005710 2.2e-10 69.3 51 66.7
Sopen01g031200 Solanum pennellii HOM05D004856 ORTHO05D005710 2.2e-10 69.3 51 62.7
Cc01_g21460 Coffea canephora HOM05D004856 ORTHO05D005710 2.9e-10 68.9 56 58.9
Dinv33120 Davidia involucrata HOM05D004856 ORTHO05D005710 2.9e-10 68.9 54 61.1
Actinidia20992 Actinidia chinensis HOM05D004856 ORTHO05D005710 8.3e-10 67.4 51 60.8
Actinidia25852 Actinidia chinensis HOM05D004856 ORTHO05D005710 1.1e-09 67.0 51 60.8
Gohir.A08G119500 Gossypium hirsutum HOM05D004856 ORTHO05D005710 1.1e-09 67.0 51 60.8
Peaxi162Scf00691g00316 Petunia axillaris HOM05D004856 ORTHO05D005710 1.1e-09 67.0 50 64.0
AL3G49500 Arabidopsis lyrata HOM05D004856 ORTHO05D005710 1.4e-09 66.6 73 45.2
AT2G16760 Arabidopsis thaliana HOM05D004856 ORTHO05D005710 1.9e-09 66.2 73 45.2
CiPaw.08G089600 Carya illinoinensis HOM05D004856 ORTHO05D005710 1.9e-09 66.2 51 64.7
THA.LOC104802153 Tarenaya hassleriana HOM05D004856 ORTHO05D005710 1.9e-09 66.2 51 58.8
Gohir.D08G140400 Gossypium hirsutum HOM05D004856 ORTHO05D005710 2.4e-09 65.9 51 58.8
Gorai.004G144500 Gossypium raimondii HOM05D004856 ORTHO05D005710 2.4e-09 65.9 51 58.8
Hma1.2p1_0486F.1_g163310 Hydrangea macrophylla HOM05D004856 ORTHO05D005710 2.4e-09 65.9 54 55.6
Aa31LG1G28670 Aethionema arabicum HOM05D004856 ORTHO05D005710 3.2e-09 65.5 52 55.8
CsaV3_4G001230 Cucumis sativus L. HOM05D004856 ORTHO05D005710 3.2e-09 65.5 55 56.4
arahy.Tifrunner.gnm1.ann1.KTVD8H Arachis hypogaea HOM05D004856 ORTHO05D005710 4.1e-09 65.1 57 54.4
ClCG10G011420 Citrullus lanatus HOM05D004856 ORTHO05D005710 4.1e-09 65.1 51 58.8
DCAR_005754 Daucus carota HOM05D004856 ORTHO05D005710 4.1e-09 65.1 50 64.0
Glyma.10G012700 Glycine max HOM05D004856 ORTHO05D005710 4.1e-09 65.1 51 60.8
Lj1A16T42 Lonicera japonica HOM05D004856 ORTHO05D005710 4.1e-09 65.1 51 58.8
CSS0029246 Camellia sinensis var. sinensis HOM05D004856 ORTHO05D005710 5.4e-09 64.7 51 56.9
MELO3C017915.2 Cucumis melo HOM05D004856 ORTHO05D005710 5.4e-09 64.7 51 58.8
Lalb_Chr21g0309601 Lupinus albus HOM05D004856 ORTHO05D005710 7.1e-09 64.3 57 50.9
Thecc.01G313900 Theobroma cacao HOM05D004856 ORTHO05D005710 7.1e-09 64.3 50 60.0
BcaC02g06969 Brassica carinata HOM05D004856 ORTHO05D005710 9.2e-09 63.9 51 54.9
C04p72740 Brassica napus HOM05D004856 ORTHO05D005710 9.2e-09 63.9 51 54.9
BolC4t28755H Brassica oleracea HOM05D004856 ORTHO05D005710 9.2e-09 63.9 51 54.9
Manes.05G003800 Manihot esculenta HOM05D004856 ORTHO05D005710 9.2e-09 63.9 54 55.6
Sed0019620 Sechium edule HOM05D004856 ORTHO05D005710 9.2e-09 63.9 51 56.9
QL12p019858 Quercus lobata HOM05D004856 ORTHO05D005710 1.2e-08 63.5 54 55.6
Actinidia17900 Actinidia chinensis HOM05D004856 ORTHO05D005710 1.6e-08 63.2 51 56.9
Carub.0003s3057 Capsella rubella HOM05D004856 ORTHO05D005710 1.6e-08 63.2 51 51.0
Glyma.02G012300 Glycine max HOM05D004856 ORTHO05D005710 1.6e-08 63.2 57 52.6
C04p00570 Brassica napus HOM05D004856 ORTHO05D005710 2.1e-08 62.8 50 54.0
Eucgr.H01013 Eucalyptus grandis HOM05D004856 ORTHO05D005710 2.1e-08 62.8 51 60.8
Gohir.D11G113900 Gossypium hirsutum HOM05D004856 ORTHO05D005710 2.1e-08 62.8 51 56.9
Gorai.007G122500 Gossypium raimondii HOM05D004856 ORTHO05D005710 2.1e-08 62.8 51 56.9
Rhsim01G0291100 Rhododendron simsii HOM05D004856 ORTHO05D005710 2.1e-08 62.8 54 59.3
Sabra14G0089300 Salix brachista HOM05D004856 ORTHO05D005710 2.1e-08 62.8 51 54.9
Aqoxy2G02758 Aquilegia oxysepala HOM05D004856 ORTHO05D005710 2.7e-08 62.4 54 55.6
EL10As5g23537 Beta vulgaris HOM05D004856 ORTHO05D005710 2.7e-08 62.4 51 54.9
Ah.02g112330 Amaranthus hybridus HOM05D000043 ORTHO05D005710 3.5e-08 62.0 51 52.9
CARHR142750 Cardamine hirsuta HOM05D004856 ORTHO05D005710 3.5e-08 62.0 74 43.2
Lj5g0024022 Lotus japonicus HOM05D004856 ORTHO05D005710 3.5e-08 62.0 51 52.9
BcaB06g29450 Brassica carinata HOM05D004856 ORTHO05D005710 4.6e-08 61.6 51 52.9
CiPaw.07G117800 Carya illinoinensis HOM05D004856 ORTHO05D005710 4.6e-08 61.6 51 54.9
Thhalv10001544m.g Eutrema salsugineum HOM05D004856 ORTHO05D005710 4.6e-08 61.6 51 51.0
Ah.11g049210 Amaranthus hybridus HOM05D004856 ORTHO05D005710 6.0e-08 61.2 51 52.9
BcaC02g12569 Brassica carinata HOM05D004856 ORTHO05D005710 6.0e-08 61.2 50 52.0
A05p00530 Brassica napus HOM05D004856 ORTHO05D005710 6.0e-08 61.2 50 52.0
BolC4t21691H Brassica oleracea HOM05D004856 ORTHO05D005710 6.0e-08 61.2 50 52.0
BraA05t19051Z Brassica rapa HOM05D004856 ORTHO05D005710 6.0e-08 61.2 50 52.0
ECA236G4246 Erigeron canadensis HOM05D004658 ORTHO05D005927 6.0e-08 61.2 60 55.0
Phvul.007G214000 Phaseolus vulgaris HOM05D004856 ORTHO05D005710 6.0e-08 61.2 49 59.2
Potri.014G120300 Populus trichocarpa HOM05D004856 ORTHO05D005710 6.0e-08 61.2 51 56.9
Hund09634 Selenicereus undatus HOM05D004856 ORTHO05D005710 6.0e-08 61.2 51 54.9
Gohir.A11G109300 Gossypium hirsutum HOM05D004856 ORTHO05D005710 7.8e-08 60.8 51 54.9
RcHm_v2.0_Chr7g0241121 Rosa chinensis HOM05D004856 ORTHO05D005710 7.8e-08 60.8 51 54.9
Ciclev10021076m.g Citrus clementina HOM05D004856 ORTHO05D005710 1.0e-07 60.5 54 55.6
Medtr1g086990 Medicago truncatula HOM05D004856 ORTHO05D005710 1.0e-07 60.5 57 50.9
Psat6g161520 Pisum sativum HOM05D004856 ORTHO05D005710 1.0e-07 60.5 54 51.9
TPR.G38696 Trifolium pratense HOM05D004856 ORTHO05D005710 1.0e-07 60.5 56 50.0
A09p28800 Brassica napus HOM05D004856 ORTHO05D005710 1.3e-07 60.1 52 50.0
BraA09t38442Z Brassica rapa HOM05D004856 ORTHO05D005710 1.3e-07 60.1 52 50.0
CANSAT25G0248 Cannabis sativa HOM05D004856 ORTHO05D005710 1.3e-07 60.1 53 49.1
Cfa005792 Carpinus fangiana HOM05D004856 ORTHO05D005710 1.3e-07 60.1 54 53.7
Gohir.A11G109400 Gossypium hirsutum HOM05D004856 ORTHO05D005710 1.3e-07 60.1 51 52.9
Gohir.D11G114000 Gossypium hirsutum HOM05D004856 ORTHO05D005710 1.3e-07 60.1 51 52.9
Nn4g25592 Nelumbo nucifera HOM05D004856 ORTHO05D005710 1.3e-07 60.1 54 55.6
Sp6g07280 Schrenkiella parvula HOM05D004856 ORTHO05D005710 1.3e-07 60.1 51 51.0
SpUn0121_0030 Schrenkiella parvula HOM05D004856 ORTHO05D005710 1.3e-07 60.1 51 51.0
TAR633G1097 Trochodendron aralioides HOM05D004856 ORTHO05D005710 1.3e-07 60.1 54 53.7
vmacro15110 Vaccinium macrocarpon HOM05D004856 ORTHO05D005710 1.3e-07 60.1 51 56.9
BcaB02g08780 Brassica carinata HOM05D004856 ORTHO05D005710 1.7e-07 59.7 50 50.0
BcaC04g21021 Brassica carinata HOM05D004856 ORTHO05D005710 1.7e-07 59.7 52 48.1
C09p36590 Brassica napus HOM05D004856 ORTHO05D005710 1.7e-07 59.7 52 48.1
BolC9t56491H Brassica oleracea HOM05D004856 ORTHO05D005710 1.7e-07 59.7 52 48.1
DCAR_025639 Daucus carota HOM05D004856 ORTHO05D005710 1.7e-07 59.7 50 58.0
Sp4g29310 Schrenkiella parvula HOM05D004856 ORTHO05D005710 1.7e-07 59.7 51 49.0
Hund02941 Selenicereus undatus HOM05D004856 ORTHO05D005710 2.3e-07 59.3 61 44.3
TAR362G0385 Trochodendron aralioides HOM05D004856 ORTHO05D005710 2.3e-07 59.3 54 53.7
VMungo0720G2414 Vigna mungo HOM05D004856 ORTHO05D005710 2.3e-07 59.3 51 52.9
Duzib133G0131 Durio zibethinus HOM05D004856 ORTHO05D005710 3.0e-07 58.9 51 54.9
Gorai.007G122600 Gossypium raimondii HOM05D004856 ORTHO05D005710 3.0e-07 58.9 51 51.0
HanXRQChr04g0106131 Helianthus annuus HOM05D004856 ORTHO05D005710 3.0e-07 58.9 51 56.9
Lsat_1_v5_gn_8_166741 Lactuca sativa HOM05D004856 ORTHO05D005710 3.0e-07 58.9 51 58.8
MD03G1294500 Malus domestica HOM05D004856 ORTHO05D005710 3.0e-07 58.9 50 58.0
Manes.01G228100 Manihot esculenta HOM05D004856 ORTHO05D005710 3.0e-07 58.9 54 50.0
PGR083G2512 Punica granatum HOM05D004856 ORTHO05D005710 3.0e-07 58.9 51 54.9
Aqoxy2G02760 Aquilegia oxysepala HOM05D004856 ORTHO05D005710 3.9e-07 58.5 54 53.7
AL4G46930 Arabidopsis lyrata HOM05D004856 ORTHO05D005710 3.9e-07 58.5 51 51.0
COL.COLO4_23228 Corchorus olitorius HOM05D000043 ORTHO05D005710 3.9e-07 58.5 51 51.0
Sc05g0000400 Simmondsia chinensis HOM05D004856 ORTHO05D005710 3.9e-07 58.5 60 46.7
GSVIVG01028122001 Vitis vinifera HOM05D004856 ORTHO05D005710 3.9e-07 58.5 66 47.0
AT5G28660 Arabidopsis thaliana HOM05D004856 ORTHO05D005710 5.1e-07 58.2 58 44.8
Ciclev10024542m.g Citrus clementina HOM05D004856 ORTHO05D005710 5.1e-07 58.2 54 50.0
Ca_10281_v3 Cicer arietinum L. HOM05D004856 ORTHO05D005710 6.6e-07 57.8 60 48.3
Duzib138G0989 Durio zibethinus HOM05D004856 ORTHO05D005710 6.6e-07 57.8 51 51.0
PSO210G6845 Papaver somniferum HOM05D004856 ORTHO05D005710 8.6e-07 57.4 57 49.1
PSO761G0661 Papaver somniferum HOM05D004856 ORTHO05D005710 8.6e-07 57.4 57 49.1
Atru.chr5.992_Atru.chr5.993 Acer truncatum HOM05D004856 ORTHO05D005710 1.1e-06 57.0 54 50.0
AUR62024646 Chenopodium quinoa HOM05D004856 ORTHO05D005710 1.1e-06 57.0 51 47.1
MBI19_g07236_MAGBIO Magnolia biondii HOM05D004856 ORTHO05D005710 1.1e-06 57.0 51 54.9
Prupe.8G266600 Prunus persica HOM05D004856 ORTHO05D005710 1.1e-06 57.0 51 52.9
ATR0796G226 Amborella trichopoda HOM05D004856 ORTHO05D005710 1.5e-06 56.6 47 55.3
AT2G47370 Arabidopsis thaliana HOM05D004856 ORTHO05D005710 1.9e-06 56.2 58 43.1
Eucgr.H01012 Eucalyptus grandis HOM05D004856 ORTHO05D005710 1.9e-06 56.2 51 52.9
HanXRQChr06g0168131 Helianthus annuus HOM05D004856 ORTHO05D005710 1.9e-06 56.2 55 50.9
AUR62011799 Chenopodium quinoa HOM05D004856 ORTHO05D005710 2.5e-06 55.8 51 47.1
FAN08G2325 Fragaria x ananassa HOM05D004856 ORTHO05D005710 2.5e-06 55.8 51 52.9
Lj2C1206T9 Lonicera japonica HOM05D004856 ORTHO05D005710 2.5e-06 55.8 51 47.1
Cpa.g.sc18.47 Carica papaya HOM05D004856 ORTHO05D005710 3.3e-06 55.5 51 51.0
FvH4_5g39130 Fragaria vesca HOM05D004856 ORTHO05D005710 3.3e-06 55.5 51 52.9
FAN13G1005 Fragaria x ananassa HOM05D004856 ORTHO05D005710 3.3e-06 55.5 51 52.9
FAN18G0331 Fragaria x ananassa HOM05D004856 ORTHO05D005710 3.3e-06 55.5 51 52.9
FAN18G2737 Fragaria x ananassa HOM05D004856 ORTHO05D005710 3.3e-06 55.5 51 52.9
TWI75G1211 Tripterygium wilfordii HOM05D004856 ORTHO05D005710 3.3e-06 55.5 54 50.0
unitig_62.g23907 Utricularia gibba HOM05D004856 ORTHO05D005710 3.3e-06 55.5 51 54.9
Carub.0004s3009 Capsella rubella HOM05D004856 ORTHO05D005710 4.3e-06 55.1 50 48.0
TWI18G0311 Tripterygium wilfordii HOM05D004856 ORTHO05D005710 5.6e-06 54.7 54 50.0


User provided reference genes

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