Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.2e-280 969.1 481 100.0
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 2.6e-211 738.8 483 80.3
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 2.6e-174 615.9 451 74.1
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 3.8e-157 558.9 400 75.2
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 1.0e-109 401.4 469 51.0
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 1.8e-106 390.6 470 50.4
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 4.4e-105 386.0 467 51.8
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 4.4e-105 386.0 452 50.9
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 2.4e-95 353.6 403 50.4
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 7.2e-92 342.0 337 54.9
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 1.6e-91 340.9 380 51.8
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.0e-90 338.2 408 49.8
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 1.0e-90 338.2 315 58.7
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 1.4e-90 337.8 311 58.5
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.3e-90 337.0 408 49.5
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 4.0e-90 336.3 317 57.4
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 4.0e-90 336.3 373 51.2
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 6.8e-90 335.5 414 47.3
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 8.8e-90 335.1 323 56.3
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 1.2e-89 334.7 312 58.7
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 1.2e-89 334.7 325 55.4
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 3.4e-89 333.2 377 51.2
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 5.7e-89 332.4 295 59.3
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 9.8e-89 331.6 314 57.3
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 2.2e-88 330.5 318 56.0
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 2.2e-88 330.5 314 56.4
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 2.8e-88 330.1 366 51.9
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 2.8e-88 330.1 317 56.2
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 3.7e-88 329.7 372 51.3
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 6.3e-88 328.9 314 56.4
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 1.1e-87 328.2 318 56.3
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.1e-87 328.2 317 55.8
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 1.4e-87 327.8 389 51.2
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 1.4e-87 327.8 320 55.9
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.8e-87 327.4 317 55.8
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 2.4e-87 327.0 314 57.3
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 2.4e-87 327.0 415 48.2
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 3.1e-87 326.6 311 57.2
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 4.1e-87 326.2 325 53.2
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 4.1e-87 326.2 318 56.0
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 5.4e-87 325.9 295 58.6
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 9.1e-87 325.1 345 53.3
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 1.6e-86 324.3 383 50.7
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 2.0e-86 323.9 315 55.9
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 2.7e-86 323.6 389 50.1
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 3.8e-85 319.7 411 47.0
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 3.8e-85 319.7 314 55.7
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 6.5e-85 318.9 317 54.6
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 6.5e-85 318.9 293 58.0
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 1.1e-84 318.2 348 52.6
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 1.1e-84 318.2 316 52.2
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 2.5e-84 317.0 317 56.8
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 2.5e-84 317.0 312 56.4
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 3.2e-84 316.6 312 55.8
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 3.2e-84 316.6 374 50.8
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 4.2e-84 316.2 315 54.6
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 7.2e-84 315.5 329 52.9
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 7.2e-84 315.5 318 54.4
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 7.2e-84 315.5 441 45.8
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 1.2e-83 314.7 311 55.6
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 2.1e-83 313.9 312 55.1
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 6.1e-83 312.4 312 55.8
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 6.1e-83 312.4 372 49.7
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 1.0e-82 311.6 314 54.8
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.8e-82 310.8 311 54.3
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 3.0e-82 310.1 370 47.8
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 3.0e-82 310.1 312 54.2
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 5.2e-82 309.3 315 53.3
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 6.8e-82 308.9 317 53.0
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 6.8e-82 308.9 312 55.1
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 8.8e-82 308.5 460 44.1
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 1.5e-81 307.8 355 50.1
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 1.5e-81 307.8 321 53.3
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 1.5e-81 307.8 370 50.0
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 2.0e-81 307.4 317 52.7
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 2.6e-81 307.0 313 53.7
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 2.6e-81 307.0 314 54.8
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 4.4e-81 306.2 312 54.8
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 4.4e-81 306.2 318 52.8
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 7.5e-81 305.4 316 54.1
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 9.8e-81 305.1 313 53.4
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 9.8e-81 305.1 330 52.1
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.3e-80 304.7 289 56.4
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.7e-80 304.3 414 46.9
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 2.2e-80 303.9 312 54.2
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 2.8e-80 303.5 314 53.5
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 8.3e-80 302.0 313 52.4
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 1.1e-79 301.6 311 53.4
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 1.4e-79 301.2 313 52.4
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 1.4e-79 301.2 313 52.4
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 2.4e-79 300.4 313 52.7
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 3.1e-79 300.1 313 52.7
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 3.1e-79 300.1 312 53.2
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 3.1e-79 300.1 311 53.7
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 4.1e-79 299.7 313 52.1
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 7.0e-79 298.9 311 52.4
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 7.0e-79 298.9 312 53.2
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 1.2e-78 298.1 313 52.1
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 1.2e-78 298.1 313 52.1
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 4.5e-78 296.2 311 53.4
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 8.6e-77 292.0 374 48.9
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 1.1e-76 291.6 313 51.8
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 3.3e-76 290.0 312 55.8
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 7.2e-76 288.9 317 50.2
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 7.2e-76 288.9 311 51.8
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 8.0e-75 285.4 311 51.8
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 2.6e-73 280.4 267 54.7
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 5.7e-73 279.3 298 52.3
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 6.4e-72 275.8 234 59.8
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 7.0e-71 272.3 286 51.7
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 2.3e-69 267.3 233 57.1
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 2.1e-67 260.8 319 50.2
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 4.3e-60 236.5 233 53.2
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 3.6e-59 233.4 268 48.5
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 8.1e-59 232.3 267 49.4
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 1.7e-53 214.5 229 51.1
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 8.1e-51 205.7 177 59.3
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 5.2e-50 203.0 288 41.0
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 3.4e-41 173.7 317 39.4
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 2.1e-35 154.5 175 48.6
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 3.1e-34 150.6 143 55.9
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 5.3e-34 149.8 295 36.3
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 1.6e-27 128.3 151 50.3
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 4.2e-15 87.0 329 26.1
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 5.5e-15 86.7 55 78.2
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 9.3e-15 85.9 92 54.3
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 4.8e-11 73.6 81 45.7
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 4.1e-10 70.5 43 74.4
SEGI_34336 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 7.9e-06 56.2 41 75.6


User provided reference genes

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