Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 1.5e-150 536.2 275 100.0
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 2.2e-125 452.6 275 86.9
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 1.3e-98 363.6 280 69.3
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 3.9e-98 362.1 285 67.4
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 3.3e-97 359.0 268 71.3
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 5.2e-95 351.7 269 70.3
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 6.2e-80 301.6 273 65.6
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 5.8e-78 295.0 283 61.1
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 9.9e-78 294.3 283 61.8
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 2.2e-77 293.1 283 60.8
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 6.4e-77 291.6 272 63.2
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.4e-76 290.4 286 58.4
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 3.2e-76 289.3 284 61.3
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 5.4e-76 288.5 277 62.8
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 4.6e-75 285.4 229 67.7
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.9e-73 280.0 263 57.8
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 7.3e-73 278.1 259 61.4
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 9.6e-73 277.7 257 61.5
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 3.6e-72 275.8 262 57.3
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 3.6e-72 275.8 262 57.3
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 8.1e-72 274.6 287 58.9
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 1.1e-71 274.2 275 58.5
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 1.8e-71 273.5 281 57.7
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 1.8e-71 273.5 257 61.9
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.4e-71 273.1 287 56.4
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 3.1e-71 272.7 222 65.8
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 3.1e-71 272.7 269 58.4
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 3.1e-71 272.7 200 71.0
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 4.0e-71 272.3 255 59.6
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 5.2e-71 271.9 256 60.2
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 6.8e-71 271.6 278 57.2
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 6.8e-71 271.6 273 58.6
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.2e-70 270.8 276 57.6
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 1.2e-70 270.8 265 59.2
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 2.6e-70 269.6 267 56.9
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 5.8e-70 268.5 236 61.9
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 9.9e-70 267.7 264 58.3
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 1.3e-69 267.3 251 60.6
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 2.2e-69 266.5 273 57.1
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 2.9e-69 266.2 264 58.0
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 3.8e-69 265.8 195 70.3
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 3.8e-69 265.8 262 59.9
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 4.9e-69 265.4 259 59.8
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 4.9e-69 265.4 255 57.6
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 6.4e-69 265.0 256 60.2
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 6.4e-69 265.0 256 60.2
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 8.4e-69 264.6 222 65.8
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 1.1e-68 264.2 200 68.5
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 1.4e-68 263.8 278 55.0
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 1.9e-68 263.5 207 67.1
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 1.9e-68 263.5 256 59.0
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 1.9e-68 263.5 256 59.0
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 2.4e-68 263.1 256 58.6
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 2.4e-68 263.1 272 57.7
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 2.4e-68 263.1 201 69.2
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 2.4e-68 263.1 206 68.0
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 4.2e-68 262.3 261 57.1
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 4.2e-68 262.3 262 58.4
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 7.1e-68 261.5 272 53.7
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 9.3e-68 261.2 259 57.1
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 1.2e-67 260.8 255 58.8
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 1.2e-67 260.8 201 66.7
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 1.2e-67 260.8 202 67.8
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 1.6e-67 260.4 197 67.0
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 2.1e-67 260.0 254 60.2
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 2.1e-67 260.0 241 59.3
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 2.1e-67 260.0 264 57.2
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 2.1e-67 260.0 266 57.1
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 4.6e-67 258.8 269 55.0
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 4.6e-67 258.8 269 53.9
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 4.6e-67 258.8 253 58.5
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 6.0e-67 258.5 213 62.9
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 1.0e-66 257.7 267 55.4
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 1.7e-66 256.9 265 55.5
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 1.7e-66 256.9 271 56.5
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 2.3e-66 256.5 263 55.5
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 5.1e-66 255.4 220 60.9
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 5.1e-66 255.4 214 62.6
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 6.6e-66 255.0 269 53.9
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 8.7e-66 254.6 205 64.4
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 8.7e-66 254.6 197 66.0
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 1.1e-65 254.2 254 58.3
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 5.6e-65 251.9 255 54.5
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 1.3e-64 250.8 254 55.5
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 6.2e-64 248.4 203 61.6
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 1.4e-63 247.3 205 61.0
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 3.1e-63 246.1 261 54.0
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 3.1e-63 246.1 265 55.5
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 6.9e-63 245.0 256 52.7
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 6.9e-63 245.0 256 52.7
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 6.9e-63 245.0 228 59.2
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 6.9e-63 245.0 270 55.6
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 9.0e-63 244.6 250 56.8
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 2.6e-62 243.0 257 56.8
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 5.8e-62 241.9 255 55.3
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 9.9e-62 241.1 183 67.2
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 9.9e-62 241.1 200 63.0
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 6.6e-58 228.4 232 53.4
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 7.3e-57 224.9 222 55.9
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 1.6e-56 223.8 271 47.6
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 3.6e-56 222.6 199 57.3
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 4.8e-56 222.2 195 59.0
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 1.4e-55 220.7 199 56.3
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 1.8e-55 220.3 207 56.5
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 5.3e-55 218.8 174 67.2
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 6.9e-55 218.4 192 56.8
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 1.9e-52 210.3 236 49.6
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 2.7e-51 206.5 216 49.5
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 6.2e-48 195.3 155 64.5
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 1.7e-45 187.2 158 58.9
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 1.9e-44 183.7 181 56.4
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 8.2e-32 141.7 124 62.1
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 4.5e-22 109.4 133 51.1
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 8.5e-21 105.1 102 54.9
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 2.0e-17 94.0 71 60.6
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-16 90.1 104 51.9
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-13 79.7 91 39.6
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 8.5e-13 78.6 83 54.2
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 2.5e-12 77.0 71 50.7
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 5.2e-10 69.3 106 40.6
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.3e-08 64.7 54 64.8


User provided reference genes

Program Settings