Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 1.4e-161 572.8 272 100.0
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 9.4e-81 304.3 308 55.5
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 4.0e-79 298.9 278 57.2
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 8.8e-79 297.7 306 52.6
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 1.3e-77 293.9 307 52.8
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 1.7e-77 293.5 313 54.3
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 1.1e-76 290.8 305 52.8
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 2.4e-76 289.7 306 51.6
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 3.1e-76 289.3 323 51.7
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 4.1e-76 288.9 305 51.8
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 9.1e-76 287.7 306 51.6
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 9.1e-76 287.7 306 52.3
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 2.0e-75 286.6 306 50.7
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 3.5e-75 285.8 305 51.8
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 5.9e-75 285.0 306 51.3
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 1.3e-74 283.9 308 50.6
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 1.7e-74 283.5 303 50.8
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 1.7e-74 283.5 308 52.9
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 2.2e-74 283.1 308 51.6
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 2.2e-74 283.1 308 52.9
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 5.0e-74 282.0 300 50.7
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 5.0e-74 282.0 302 52.3
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 6.5e-74 281.6 302 50.3
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 1.1e-73 280.8 302 51.3
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 1.5e-73 280.4 306 51.6
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 1.5e-73 280.4 311 52.1
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 1.5e-73 280.4 306 49.7
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 1.9e-73 280.0 302 50.3
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 3.2e-73 279.3 299 50.5
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 3.2e-73 279.3 299 50.5
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 3.2e-73 279.3 302 52.0
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 7.2e-73 278.1 302 50.3
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 1.2e-72 277.3 299 50.5
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 1.6e-72 276.9 313 50.8
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 2.7e-72 276.2 301 50.2
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 3.6e-72 275.8 297 50.2
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 3.6e-72 275.8 298 50.3
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 6.1e-72 275.0 306 49.7
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 1.8e-71 273.5 290 50.7
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.8e-71 273.5 328 46.6
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 6.8e-71 271.6 302 49.7
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 6.8e-71 271.6 302 49.7
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 1.5e-70 270.4 290 49.3
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 1.5e-70 270.4 308 51.6
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 3.4e-70 269.2 291 50.5
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 5.7e-70 268.5 307 48.9
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 9.8e-70 267.7 308 50.0
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 2.2e-69 266.5 297 49.5
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 2.8e-69 266.2 293 51.2
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 2.8e-69 266.2 306 51.0
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 3.7e-69 265.8 302 49.3
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 1.4e-68 263.8 305 48.5
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 1.8e-68 263.5 293 50.9
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 3.1e-68 262.7 310 48.1
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 3.1e-68 262.7 310 48.1
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 7.0e-68 261.5 329 46.8
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 9.2e-68 261.2 306 48.7
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 1.2e-67 260.8 293 50.5
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 1.6e-67 260.4 298 50.7
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 1.6e-67 260.4 297 49.5
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 3.5e-67 259.2 287 49.5
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 4.5e-67 258.8 297 48.8
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 4.5e-67 258.8 295 49.2
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 5.9e-67 258.5 298 50.3
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 5.9e-67 258.5 297 49.2
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 7.7e-67 258.1 297 48.5
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 1.3e-66 257.3 295 49.5
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 1.7e-66 256.9 302 48.0
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 2.3e-66 256.5 301 48.5
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 2.9e-66 256.1 302 47.7
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 3.8e-66 255.8 294 47.3
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 3.8e-66 255.8 297 47.1
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 3.8e-66 255.8 336 45.8
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 5.0e-66 255.4 297 49.2
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 8.6e-66 254.6 297 47.5
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 8.6e-66 254.6 287 49.8
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 1.1e-65 254.2 296 47.3
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.1e-65 254.2 300 47.3
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 1.9e-65 253.4 294 48.6
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 1.9e-65 253.4 294 48.6
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 3.3e-65 252.7 328 46.3
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 3.3e-65 252.7 307 49.2
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 3.6e-64 249.2 274 51.8
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 4.7e-64 248.8 294 46.9
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 1.4e-63 247.3 311 46.6
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 3.0e-63 246.1 297 47.5
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 3.4e-62 242.7 292 48.3
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 3.4e-62 242.7 294 48.0
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 3.4e-62 242.7 294 48.0
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 3.4e-62 242.7 289 48.1
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 4.4e-62 242.3 293 45.7
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 7.5e-62 241.5 324 44.8
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 2.2e-61 240.0 301 46.2
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 6.4e-61 238.4 284 46.8
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 8.3e-61 238.0 295 45.8
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 2.4e-60 236.5 296 49.3
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 2.4e-60 236.5 302 45.4
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 2.4e-60 236.5 371 42.0
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 7.0e-60 235.0 284 47.5
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 1.2e-59 234.2 291 45.0
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 7.8e-59 231.5 297 45.8
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 8.6e-58 228.0 313 44.7
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 1.1e-57 227.6 280 47.9
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 5.6e-57 225.3 302 45.0
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 3.6e-56 222.6 293 46.1
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 1.4e-55 220.7 294 45.2
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 7.5e-54 214.9 298 44.3
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 1.4e-47 194.1 296 38.2
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 3.4e-46 189.5 258 43.0
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 7.5e-46 188.3 296 36.8
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 2.2e-45 186.8 295 39.3
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 1.1e-44 184.5 297 38.4
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 1.4e-44 184.1 243 44.4
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 1.2e-43 181.0 208 48.6
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.5e-41 173.3 258 41.9
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 8.1e-40 168.3 217 44.7
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 4.4e-38 162.5 86 90.7
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 1.7e-37 160.6 240 40.8
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 2.4e-36 156.8 85 82.4
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 9.2e-36 154.8 222 42.3
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 6.0e-35 152.1 299 34.1
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 1.7e-34 150.6 176 51.7
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 3.0e-34 149.8 281 33.5
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 3.3e-33 146.4 169 47.9
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 3.3e-33 146.4 169 47.9
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.1e-32 143.7 218 42.2
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 4.2e-28 129.4 80 70.0
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 5.4e-28 129.0 101 63.4
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 4.6e-27 125.9 104 55.8
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 6.6e-26 122.1 238 35.7
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 2.5e-25 120.2 83 72.3
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 2.8e-24 116.7 138 43.5
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 1.5e-22 110.9 230 33.9
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 1.2e-19 101.3 232 29.7
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 5.8e-14 82.4 74 54.1
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 1.1e-12 78.2 39 84.6
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 2.0e-06 57.4 47 51.1


User provided reference genes

Program Settings