Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 0.0e+00 1293.5 676 100.0
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.0e-277 959.9 676 75.0
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 1.2e-265 919.8 723 70.0
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 5.8e-265 917.5 677 72.2
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.1e-252 876.7 677 67.8
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.1e-247 860.1 674 66.9
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 3.3e-244 848.6 677 67.8
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 3.1e-242 842.0 677 67.4
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 9.7e-236 820.5 677 65.1
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 5.9e-233 811.2 678 64.9
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 2.2e-232 809.3 675 65.3
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 2.2e-232 809.3 662 66.2
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 5.5e-231 804.7 677 63.8
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 5.7e-228 794.7 681 62.0
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 5.7e-228 794.7 679 63.6
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.6e-222 776.5 677 60.9
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 1.8e-221 773.1 666 61.6
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 5.7e-220 768.1 666 60.4
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 9.8e-220 767.3 661 62.9
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 3.7e-219 765.4 676 62.0
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.4e-218 763.5 674 62.9
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 9.1e-218 760.8 674 61.6
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.7e-216 756.5 674 61.1
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 6.6e-216 754.6 674 60.5
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 9.5e-215 750.7 675 60.9
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.2e-214 750.4 682 59.8
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.8e-213 746.5 659 60.4
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 9.8e-212 740.7 673 59.4
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 2.2e-211 739.6 676 59.0
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 2.2e-211 739.6 701 58.6
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 3.7e-211 738.8 678 60.0
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 4.9e-211 738.4 639 61.0
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.1e-210 737.3 665 60.6
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.2e-209 733.8 670 59.4
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.6e-209 733.4 709 57.4
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 7.8e-209 731.1 693 59.5
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.0e-208 730.7 669 58.1
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 6.6e-208 728.0 675 59.3
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.9e-207 726.5 679 59.5
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.9e-207 726.5 674 60.2
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.9e-207 726.5 661 59.9
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.3e-207 725.7 652 59.8
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 7.3e-207 724.5 663 59.9
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.2e-206 723.8 590 66.9
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 2.8e-206 722.6 676 57.0
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.0e-205 720.7 656 59.1
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.4e-205 720.3 673 56.5
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-205 719.9 674 55.9
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.0e-205 718.8 678 58.8
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 6.8e-205 718.0 674 55.9
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-204 717.2 661 59.2
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 2.6e-204 716.1 676 56.7
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 4.4e-204 715.3 682 58.5
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 4.4e-204 715.3 676 56.2
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.3e-203 713.8 675 57.6
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 1.3e-203 713.8 674 56.4
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 1.7e-203 713.4 674 56.5
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.7e-203 712.2 646 60.1
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 1.4e-202 710.3 655 56.6
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 5.4e-202 708.4 678 56.6
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 2.0e-201 706.4 665 56.7
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.5e-201 705.7 673 56.6
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 4.6e-201 705.3 665 57.0
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.3e-200 703.7 674 54.6
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 8.6e-200 701.0 673 55.4
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.1e-199 700.7 673 55.7
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 1.2e-198 697.2 667 55.6
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-198 696.4 646 59.6
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 1.8e-197 693.3 676 55.8
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 5.8e-196 688.3 675 56.4
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 2.2e-195 686.4 671 54.7
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 7.1e-194 681.4 670 53.9
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.6e-193 680.2 670 53.9
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 2.1e-193 679.9 665 55.9
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 4.6e-193 678.7 664 56.3
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.7e-192 676.8 704 51.4
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 2.3e-192 676.4 669 55.0
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 5.1e-192 675.2 592 57.9
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 5.1e-192 675.2 665 55.3
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 1.5e-191 673.7 664 55.7
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.5e-191 673.7 664 55.4
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 1.5e-191 673.7 664 55.6
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 5.6e-191 671.8 668 55.2
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 9.5e-191 671.0 664 55.6
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 9.5e-191 671.0 664 55.6
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.1e-190 669.8 676 52.7
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 6.2e-190 668.3 665 54.7
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 1.4e-189 667.2 654 56.4
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 4.4e-188 662.1 639 57.0
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 1.3e-187 660.6 654 55.7
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 1.4e-186 657.1 668 52.7
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 6.0e-185 651.7 665 55.2
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 3.0e-184 649.4 678 54.9
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 8.6e-184 647.9 669 54.6
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.5e-183 647.1 548 61.1
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 4.3e-183 645.6 566 60.8
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.6e-182 642.5 669 54.9
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 5.2e-181 638.6 677 54.1
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 1.2e-177 627.5 581 59.6
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 2.7e-177 626.3 522 63.0
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 8.7e-176 621.3 550 59.5
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 4.3e-175 619.0 679 54.2
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 8.7e-168 594.7 541 58.6
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 2.1e-161 573.5 538 55.8
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 7.9e-161 571.6 617 54.6
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 6.7e-160 568.5 676 47.0
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 1.8e-157 560.5 661 49.3
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 6.5e-155 552.0 676 46.7
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 3.3e-151 539.7 670 47.0
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 1.2e-148 531.2 671 44.7
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.4e-141 507.7 664 43.4
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.0e-136 490.0 406 62.6
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.0e-135 487.3 660 43.3
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 3.7e-134 483.0 401 65.1
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 4.1e-133 479.6 661 42.8
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 4.1e-133 479.6 637 44.7
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 6.1e-129 465.7 659 42.3
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 2.2e-126 457.2 662 39.6
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 4.2e-122 443.0 438 55.3
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 7.0e-109 399.1 401 52.4
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.2e-79 302.0 250 64.8
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 4.4e-79 300.1 391 47.3
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 4.1e-77 293.5 258 60.5
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 1.5e-71 275.0 440 38.0
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 3.3e-66 257.3 455 37.6
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.0e-59 235.7 223 57.8
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.5e-58 231.1 235 51.5
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 5.3e-56 223.4 200 63.0
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 1.3e-54 218.8 385 39.2
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.6e-49 201.8 395 38.5
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 4.6e-44 183.7 256 41.8
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 7.9e-44 183.0 206 50.5
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 2.4e-40 171.4 310 38.7
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.3e-38 165.6 236 45.8
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 1.8e-35 155.2 167 50.3
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 3.9e-35 154.1 318 38.1
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.7e-35 153.3 128 60.9
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 5.3e-32 143.7 109 67.0
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 1.7e-30 138.7 255 36.5
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 1.1e-29 136.0 629 24.8
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 9.3e-29 132.9 129 58.9
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 5.1e-27 127.1 188 41.0
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 4.8e-25 120.6 97 59.8
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 5.1e-19 100.5 110 48.2
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.6e-18 98.2 132 44.7
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.4e-18 96.7 171 39.8
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 2.2e-17 95.1 74 64.9
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-16 92.8 132 41.7
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.5e-15 89.0 73 63.0
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 3.4e-15 87.8 148 39.9
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 4.5e-15 87.4 68 61.8
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.5e-13 81.6 87 52.9
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.6e-12 77.8 62 61.3
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 1.8e-11 75.5 80 50.0
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.5e-10 72.4 64 53.1
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 9.7e-10 69.7 48 66.7
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 2.2e-09 68.6 69 46.4
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-08 66.2 69 44.9
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 2.6e-07 61.6 74 47.3
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 4.5e-07 60.8 111 39.6


User provided reference genes

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