Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 9.7e-62 240.0 121 100.0
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 5.0e-26 121.3 125 59.2
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 2.6e-22 109.0 136 50.0
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 4.1e-20 101.7 135 50.4
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 2.0e-19 99.4 126 49.2
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 6.0e-19 97.8 123 47.2
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 1.3e-18 96.7 137 46.0
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.3e-18 95.9 130 51.5
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 5.6e-17 91.3 122 41.8
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 7.3e-17 90.9 124 45.2
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 1.2e-16 90.1 133 45.9
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 2.8e-16 89.0 133 40.6
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 3.6e-16 88.6 121 45.5
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.6e-16 88.6 120 43.3
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 4.7e-16 88.2 128 46.1
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 6.2e-16 87.8 62 62.9
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.2e-16 87.8 120 42.5
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 6.2e-16 87.8 137 42.3
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 6.2e-16 87.8 74 56.8
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 6.2e-16 87.8 97 48.5
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 8.1e-16 87.4 120 42.5
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.4e-15 86.7 122 41.8
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.4e-15 86.7 128 43.0
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 1.8e-15 86.3 134 44.8
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 1.8e-15 86.3 137 38.7
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.8e-15 86.3 105 48.6
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 4.0e-15 85.1 116 48.3
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 6.8e-15 84.3 122 44.3
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 6.8e-15 84.3 119 45.4
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 6.8e-15 84.3 134 38.8
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 8.9e-15 84.0 128 46.1
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.2e-14 83.6 91 49.5
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.5e-14 83.2 74 56.8
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.5e-14 83.2 127 42.5
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.0e-14 82.8 110 44.5
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 2.0e-14 82.8 121 44.6
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.6e-14 82.4 122 44.3
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.6e-14 82.4 59 64.4
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 3.4e-14 82.0 59 64.4
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.4e-14 82.0 59 64.4
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 5.8e-14 81.3 57 66.7
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 5.8e-14 81.3 131 45.8
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 7.5e-14 80.9 80 51.2
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 7.5e-14 80.9 106 38.7
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 7.5e-14 80.9 108 41.7
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 7.5e-14 80.9 67 64.2
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 9.8e-14 80.5 65 63.1
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.3e-13 80.1 126 42.9
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.3e-13 80.1 131 45.8
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.3e-13 80.1 131 45.8
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.7e-13 79.7 59 62.7
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 1.7e-13 79.7 62 62.9
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 1.7e-13 79.7 73 52.1
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 2.2e-13 79.3 103 46.6
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.9e-13 79.0 116 45.7
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 2.9e-13 79.0 70 55.7
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 2.9e-13 79.0 138 41.3
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.9e-13 79.0 117 44.4
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 2.9e-13 79.0 49 65.3
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 3.7e-13 78.6 58 58.6
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 3.7e-13 78.6 71 54.9
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 8.3e-13 77.4 116 47.4
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.1e-12 77.0 56 62.5
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.1e-12 77.0 138 37.0
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 1.1e-12 77.0 84 48.8
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.1e-12 77.0 58 55.2
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.4e-12 76.6 137 38.7
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 1.4e-12 76.6 123 39.0
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 1.4e-12 76.6 116 43.1
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 1.9e-12 76.3 64 59.4
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 1.9e-12 76.3 101 40.6
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 2.4e-12 75.9 129 41.9
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 2.4e-12 75.9 75 56.0
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 2.4e-12 75.9 93 41.9
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 2.4e-12 75.9 123 40.7
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 3.2e-12 75.5 53 60.4
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 3.2e-12 75.5 53 66.0
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 4.1e-12 75.1 122 41.8
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 4.1e-12 75.1 62 61.3
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.1e-12 75.1 104 40.4
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 4.1e-12 75.1 100 44.0
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 5.4e-12 74.7 92 47.8
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 5.4e-12 74.7 67 55.2
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 7.1e-12 74.3 57 64.9
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 7.1e-12 74.3 55 63.6
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 7.1e-12 74.3 49 59.2
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 9.2e-12 73.9 92 43.5
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 1.2e-11 73.6 52 61.5
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 1.2e-11 73.6 98 48.0
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 1.2e-11 73.6 139 42.4
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 1.2e-11 73.6 85 49.4
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.2e-11 73.6 121 38.0
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.6e-11 73.2 52 61.5
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 1.6e-11 73.2 120 36.7
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 1.6e-11 73.2 68 48.5
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 1.6e-11 73.2 65 63.1
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 2.1e-11 72.8 70 50.0
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 2.1e-11 72.8 69 49.3
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 2.1e-11 72.8 114 43.9
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 2.7e-11 72.4 49 65.3
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 2.7e-11 72.4 109 40.4
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 2.7e-11 72.4 53 54.7
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 2.7e-11 72.4 107 41.1
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.7e-11 72.4 116 40.5
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 2.7e-11 72.4 121 41.3
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 3.5e-11 72.0 52 59.6
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 3.5e-11 72.0 52 63.5
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 3.5e-11 72.0 52 59.6
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 3.5e-11 72.0 49 63.3
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 3.5e-11 72.0 52 63.5
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 3.5e-11 72.0 52 59.6
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 3.5e-11 72.0 52 63.5
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 3.5e-11 72.0 52 59.6
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 3.5e-11 72.0 49 65.3
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.5e-11 72.0 125 37.6
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 4.6e-11 71.6 130 43.8
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 6.0e-11 71.2 52 61.5
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 7.8e-11 70.9 49 61.2
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 7.8e-11 70.9 52 59.6
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 7.8e-11 70.9 52 61.5
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 7.8e-11 70.9 49 61.2
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 7.8e-11 70.9 56 64.3
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.0e-10 70.5 114 39.5
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.3e-10 70.1 48 68.8
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 1.3e-10 70.1 56 55.4
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.3e-10 70.1 53 56.6
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 1.7e-10 69.7 52 59.6
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 1.7e-10 69.7 99 39.4
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 1.7e-10 69.7 49 61.2
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 2.3e-10 69.3 53 56.6
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 2.3e-10 69.3 53 56.6
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 2.3e-10 69.3 53 56.6
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 2.3e-10 69.3 70 52.9
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 3.9e-10 68.6 111 38.7
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 3.9e-10 68.6 109 39.4
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 3.9e-10 68.6 109 39.4
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 3.9e-10 68.6 47 63.8
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 3.9e-10 68.6 52 55.8
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 5.1e-10 68.2 47 63.8
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 5.1e-10 68.2 72 48.6
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 5.1e-10 68.2 105 40.0
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 6.6e-10 67.8 68 51.5
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 8.6e-10 67.4 53 56.6
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 8.6e-10 67.4 109 38.5
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 8.6e-10 67.4 109 38.5
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 8.6e-10 67.4 109 38.5
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 1.1e-09 67.0 53 54.7
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 1.1e-09 67.0 53 54.7
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.1e-09 67.0 63 54.0
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 1.1e-09 67.0 121 41.3
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.1e-09 67.0 108 43.5
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 1.1e-09 67.0 69 44.9
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 1.5e-09 66.6 109 42.2
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 2.5e-09 65.9 47 61.7
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 2.5e-09 65.9 47 61.7
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 4.3e-09 65.1 58 60.3
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 5.6e-09 64.7 53 50.9
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 5.6e-09 64.7 52 53.8
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 7.3e-09 64.3 125 34.4
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.2e-08 63.5 52 57.7
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.2e-08 63.5 53 58.5
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 1.2e-08 63.5 106 35.8
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 1.2e-08 63.5 106 35.8
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 2.8e-08 62.4 70 45.7
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 3.6e-08 62.0 58 53.4
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 8.1e-08 60.8 44 61.4
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 8.1e-08 60.8 52 55.8
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 1.1e-07 60.5 49 51.0
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 1.1e-07 60.5 65 52.3
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 1.4e-07 60.1 109 38.5
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.8e-07 59.7 105 35.2
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 3.1e-07 58.9 95 44.2
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 5.2e-07 58.2 107 38.3
Aqoxy2G00199 Aquilegia oxysepala HOM05D003595 ORTHO05D004132 8.9e-07 57.4 92 40.2
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.2e-06 57.0 67 44.8
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 2.0e-06 56.2 121 35.5
COL.COLO4_24249 Corchorus olitorius HOM05D002383 ORTHO05D002515 2.0e-06 56.2 60 43.3
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.6e-06 55.8 56 48.2
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 2.6e-06 55.8 56 48.2
Atru.chr11.2114 Acer truncatum HOM05D002383 ORTHO05D002515 5.8e-06 54.7 72 37.5
Atru.chr11.2129 Acer truncatum HOM05D002383 ORTHO05D002515 5.8e-06 54.7 72 37.5
Medtr7g092040 Medicago truncatula HOM05D031557 ORTHO05D030146 5.8e-06 54.7 60 50.0
SGA_v2.0_scaffold18G08279 Striga asiatica HOM05D002383 ORTHO05D002515 5.8e-06 54.7 99 39.4
MSTRG.3147 Avicennia marina HOM05D002383 ORTHO05D002515 9.9e-06 53.9 71 43.7
unitig_8.g2994 Utricularia gibba HOM05D003595 ORTHO05D004132 9.9e-06 53.9 61 41.0


User provided reference genes

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