Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16084 Striga asiatica HOM05D003775 ORTHO05D004314 1.3e-94 349.7 181 100.0
SGA_v2.0_scaffold42G16081 Striga asiatica HOM05D003775 ORTHO05D004314 1.0e-78 297.0 195 82.6
SalBow6G0244 Salvia bowleyana HOM05D003775 ORTHO05D004314 1.0e-70 270.4 195 73.3
Migut.N02350 Erythranthe guttata HOM05D003775 ORTHO05D004314 3.2e-69 265.4 195 73.3
Lj1A317T43 Lonicera japonica HOM05D003775 ORTHO05D004314 6.3e-65 251.1 196 68.9
MSTRG.12454 Avicennia marina HOM05D003775 ORTHO05D004314 1.4e-64 250.0 195 70.8
Actinidia06930 Actinidia chinensis HOM05D003775 ORTHO05D004314 7.2e-61 237.7 195 66.7
Oeu061300.1 Olea europaea HOM05D003775 ORTHO05D004314 2.1e-60 236.1 195 68.2
Oeu061301.1 Olea europaea HOM05D003775 ORTHO05D004314 2.1e-60 236.1 195 68.2
Nitab4.5_0002726g0070 Nicotiana tabacum HOM05D003775 ORTHO05D004314 2.7e-60 235.7 195 66.2
unitig_22.g6197 Utricularia gibba HOM05D003775 ORTHO05D004314 1.0e-59 233.8 195 65.1
Actinidia16351 Actinidia chinensis HOM05D003775 ORTHO05D004314 1.2e-58 230.3 195 66.7
Cc01_g06210 Coffea canephora HOM05D003775 ORTHO05D004314 1.7e-57 226.5 193 63.7
PGSC0003DMG400013186 Solanum tuberosum HOM05D003775 ORTHO05D004314 3.7e-57 225.3 193 64.2
Sopen11g024920 Solanum pennellii HOM05D003775 ORTHO05D004314 6.3e-57 224.6 193 62.7
Solyc11g065210.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 8.3e-57 224.2 193 62.2
CAN.G633.2 Capsicum annuum HOM05D003775 ORTHO05D004314 1.8e-56 223.0 193 62.7
Hma1.2p1_1200F.1_g266540 Hydrangea macrophylla HOM05D003775 ORTHO05D004314 1.6e-55 219.9 195 62.1
Hma1.2p1_1694F.1_g298010 Hydrangea macrophylla HOM05D003775 ORTHO05D004314 1.6e-55 219.9 195 62.1
Prupe.2G027700 Prunus persica HOM05D003775 ORTHO05D004314 5.9e-55 218.0 195 64.6
Lsat_1_v5_gn_6_26100 Lactuca sativa HOM05D003775 ORTHO05D004314 7.7e-55 217.6 195 62.6
RcHm_v2.0_Chr1g0319451 Rosa chinensis HOM05D003775 ORTHO05D004314 1.3e-54 216.9 195 65.1
Aqoxy6G01356 Aquilegia oxysepala HOM05D003775 ORTHO05D004314 3.8e-54 215.3 195 64.1
HanXRQChr13g0401471 Helianthus annuus HOM05D003775 ORTHO05D004314 6.5e-54 214.5 195 63.1
Cpa.g.sc197.14 Carica papaya HOM05D003775 ORTHO05D004314 1.1e-53 213.8 195 62.6
MD07G1027400 Malus domestica HOM05D003775 ORTHO05D004314 1.5e-53 213.4 195 62.6
Hund18010 Selenicereus undatus HOM05D003775 ORTHO05D004314 1.5e-53 213.4 195 62.6
Atru.chr11.2505 Acer truncatum HOM05D003775 ORTHO05D004314 2.5e-53 212.6 195 61.0
TAR633G1887 Trochodendron aralioides HOM05D003775 ORTHO05D004314 4.2e-53 211.8 195 62.1
Sc14g0005810 Simmondsia chinensis HOM05D003775 ORTHO05D004314 5.5e-53 211.5 195 62.6
ECA233G1032 Erigeron canadensis HOM05D003775 ORTHO05D004314 7.2e-53 211.1 195 62.6
MD02G1296700 Malus domestica HOM05D003775 ORTHO05D004314 7.2e-53 211.1 195 62.1
TWI15G0411 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 7.2e-53 211.1 195 64.1
FAN06G3050 Fragaria x ananassa HOM05D003775 ORTHO05D004314 9.4e-53 210.7 195 62.6
FvH4_7g02050 Fragaria vesca HOM05D003775 ORTHO05D004314 1.2e-52 210.3 195 62.1
COL.COLO4_25844 Corchorus olitorius HOM05D003775 ORTHO05D004314 2.1e-52 209.5 196 62.2
Potri.003G202800 Populus trichocarpa HOM05D003775 ORTHO05D004314 2.1e-52 209.5 195 63.6
Thecc.10G005200 Theobroma cacao HOM05D003775 ORTHO05D004314 3.6e-52 208.8 195 62.6
TAR636G2085 Trochodendron aralioides HOM05D003775 ORTHO05D004314 3.6e-52 208.8 195 62.6
Glyma.12G011800 Glycine max HOM05D003775 ORTHO05D004314 8.0e-52 207.6 195 61.0
Glyma.09G225200 Glycine max HOM05D003775 ORTHO05D004314 1.0e-51 207.2 195 61.0
Rhsim07G0061800 Rhododendron simsii HOM05D003775 ORTHO05D004314 1.4e-51 206.8 195 61.5
Sc10g0004200 Simmondsia chinensis HOM05D003775 ORTHO05D004314 1.4e-51 206.8 195 62.1
GSVIVG01000859001 Vitis vinifera HOM05D003775 ORTHO05D004314 1.8e-51 206.5 196 62.2
Nn3g16658 Nelumbo nucifera HOM05D003775 ORTHO05D004314 2.3e-51 206.1 195 63.1
Sabra01G0017100 Salix brachista HOM05D003775 ORTHO05D004314 2.3e-51 206.1 195 61.5
PGR031G2286 Punica granatum HOM05D003775 ORTHO05D004314 4.0e-51 205.3 195 61.5
Manes.11G002300 Manihot esculenta HOM05D003775 ORTHO05D004314 5.2e-51 204.9 197 60.4
Dinv32058 Davidia involucrata HOM05D003775 ORTHO05D004314 6.8e-51 204.5 195 62.1
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 8.8e-51 204.1 178 63.5
Duzib114G0793 Durio zibethinus HOM05D003775 ORTHO05D004314 2.0e-50 203.0 196 60.2
Ah.05g171640 Amaranthus hybridus HOM05D003775 ORTHO05D004314 2.6e-50 202.6 197 61.4
BcaNung03431 Brassica carinata HOM05D003775 ORTHO05D004314 2.6e-50 202.6 194 60.3
Gohir.A06G159000 Gossypium hirsutum HOM05D003775 ORTHO05D004314 2.6e-50 202.6 197 61.9
A01p07290 Brassica napus HOM05D003775 ORTHO05D004314 3.4e-50 202.2 194 60.3
FAN01G0886 Fragaria x ananassa HOM05D003775 ORTHO05D004314 3.4e-50 202.2 195 61.0
Sabra03G0149800 Salix brachista HOM05D003775 ORTHO05D004314 3.4e-50 202.2 195 62.1
Gorai.010G192300 Gossypium raimondii HOM05D003775 ORTHO05D004314 7.5e-50 201.1 197 61.4
TWI63G1774 Tripterygium wilfordii HOM05D003775 ORTHO05D004314 7.5e-50 201.1 195 60.0
HPP92_025001 Vanilla planifolia HOM05D003775 ORTHO05D004314 7.5e-50 201.1 195 60.5
BcaC09g51876 Brassica carinata HOM05D003775 ORTHO05D004314 9.8e-50 200.7 194 59.8
C01p08050 Brassica napus HOM05D003775 ORTHO05D004314 9.8e-50 200.7 194 59.8
CiPaw.14G005400 Carya illinoinensis HOM05D003775 ORTHO05D004314 9.8e-50 200.7 197 60.4
Actinidia06274 Actinidia chinensis HOM05D003775 ORTHO05D004314 1.7e-49 199.9 195 60.0
Duzib106G0584 Durio zibethinus HOM05D003775 ORTHO05D004314 1.7e-49 199.9 195 61.5
FAN10G1046 Fragaria x ananassa HOM05D003775 ORTHO05D004314 1.7e-49 199.9 195 60.0
Gohir.D06G164900 Gossypium hirsutum HOM05D003775 ORTHO05D004314 1.7e-49 199.9 197 61.4
Phvul.011G014600 Phaseolus vulgaris HOM05D003775 ORTHO05D004314 1.7e-49 199.9 195 59.5
ATR0721G058 Amborella trichopoda HOM05D003775 ORTHO05D004314 2.2e-49 199.5 195 61.0
BolC1t00794H Brassica oleracea HOM05D003775 ORTHO05D004314 2.2e-49 199.5 194 59.8
Ciclev10031129m.g Citrus clementina HOM05D003775 ORTHO05D004314 2.2e-49 199.5 195 57.4
BraA01t00678Z Brassica rapa HOM05D003775 ORTHO05D004314 2.8e-49 199.1 194 59.8
Lalb_Chr19g0140171 Lupinus albus HOM05D003775 ORTHO05D004314 2.8e-49 199.1 195 57.4
THA.LOC104826715 Tarenaya hassleriana HOM05D003775 ORTHO05D004314 2.8e-49 199.1 195 58.5
CSS0036530 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 4.8e-49 198.4 195 59.5
CSS0045062 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 4.8e-49 198.4 195 59.5
Lj3g0020763 Lotus japonicus HOM05D003775 ORTHO05D004314 4.8e-49 198.4 195 60.0
Ca_00245_v3 Cicer arietinum L. HOM05D003775 ORTHO05D004314 1.4e-48 196.8 197 58.9
Thhalv10025311m.g Eutrema salsugineum HOM05D003775 ORTHO05D004314 1.4e-48 196.8 195 60.0
THA.LOC104819115 Tarenaya hassleriana HOM05D003775 ORTHO05D004314 1.8e-48 196.4 195 56.9
Aa31LG2G19490 Aethionema arabicum HOM05D003775 ORTHO05D004314 2.4e-48 196.1 195 59.0
Manes.04G163700 Manihot esculenta HOM05D003775 ORTHO05D004314 4.1e-48 195.3 195 59.0
CARHR238790 Cardamine hirsuta HOM05D003775 ORTHO05D004314 7.0e-48 194.5 195 58.5
AUR62019122 Chenopodium quinoa HOM05D003775 ORTHO05D004314 7.0e-48 194.5 195 59.0
A08p19030 Brassica napus HOM05D003775 ORTHO05D004314 1.2e-47 193.7 194 58.2
Lj7C578T6 Lonicera japonica HOM05D003775 ORTHO05D004314 1.2e-47 193.7 195 56.9
BcaB03g12665 Brassica carinata HOM05D003775 ORTHO05D004314 1.6e-47 193.4 194 58.2
CANSAT80G1378 Cannabis sativa HOM05D003775 ORTHO05D004314 2.0e-47 193.0 196 60.7
arahy.Tifrunner.gnm1.ann1.F7MMZ3 Arachis hypogaea HOM05D003775 ORTHO05D004314 2.7e-47 192.6 195 57.9
arahy.Tifrunner.gnm1.ann1.IE4AJN Arachis hypogaea HOM05D003775 ORTHO05D004314 2.7e-47 192.6 195 57.9
BcaC01g01133 Brassica carinata HOM05D003775 ORTHO05D004314 2.7e-47 192.6 194 57.7
Sp7g28760 Schrenkiella parvula HOM05D003775 ORTHO05D004314 3.5e-47 192.2 194 58.2
Sed0004278 Sechium edule HOM05D003775 ORTHO05D004314 3.5e-47 192.2 195 55.9
CDE02G2263 Ceratophyllum demersum HOM05D003775 ORTHO05D004314 4.5e-47 191.8 195 57.9
CsaV3_5G006240 Cucumis sativus L. HOM05D003775 ORTHO05D004314 4.5e-47 191.8 195 56.4
Lsat_1_v5_gn_1_98220 Lactuca sativa HOM05D003775 ORTHO05D004314 5.9e-47 191.4 196 58.2
BolC3t21154H Brassica oleracea HOM05D003775 ORTHO05D004314 1.0e-46 190.7 194 57.2
PSO384G3184 Papaver somniferum HOM05D003775 ORTHO05D004314 1.3e-46 190.3 195 59.0
C03p88460 Brassica napus HOM05D003775 ORTHO05D004314 1.7e-46 189.9 194 57.2
CDE09G1021 Ceratophyllum demersum HOM05D003775 ORTHO05D004314 2.3e-46 189.5 195 57.4
ClCG02G013920 Citrullus lanatus HOM05D003775 ORTHO05D004314 2.3e-46 189.5 195 57.4
Oeu019155.3 Olea europaea HOM05D003775 ORTHO05D004314 2.3e-46 189.5 195 57.9
BraA08t33864Z Brassica rapa HOM05D003775 ORTHO05D004314 2.9e-46 189.1 194 57.2
QL04p013175 Quercus lobata HOM05D003775 ORTHO05D004314 2.9e-46 189.1 195 57.9
VMungo1127G0258 Vigna mungo HOM05D003775 ORTHO05D004314 5.0e-46 188.3 194 56.2
PSO339G4517 Papaver somniferum HOM05D003775 ORTHO05D004314 6.6e-46 188.0 195 58.5
Oeu003914.1 Olea europaea HOM05D003775 ORTHO05D004314 8.6e-46 187.6 196 57.7
BcaNung02733 Brassica carinata HOM05D003775 ORTHO05D004314 1.1e-45 187.2 193 56.0
HanXRQChr01g0020841 Helianthus annuus HOM05D003775 ORTHO05D004314 1.1e-45 187.2 195 55.9
C07p58270 Brassica napus HOM05D003775 ORTHO05D004314 1.5e-45 186.8 194 56.7
BolC7t46285H Brassica oleracea HOM05D003775 ORTHO05D004314 1.5e-45 186.8 194 56.7
Medtr2g060050 Medicago truncatula HOM05D003775 ORTHO05D004314 2.5e-45 186.0 197 56.9
Sed0002392 Sechium edule HOM05D003775 ORTHO05D004314 2.5e-45 186.0 195 57.4
Psat7g201120 Pisum sativum HOM05D003775 ORTHO05D004314 4.2e-45 185.3 194 56.2
Carub.0007s0965 Capsella rubella HOM05D003775 ORTHO05D004314 5.5e-45 184.9 195 56.4
TPR.G20248 Trifolium pratense HOM05D003775 ORTHO05D004314 7.2e-45 184.5 194 56.2
Cc02_g29350 Coffea canephora HOM05D003775 ORTHO05D004314 1.2e-44 183.7 195 56.4
Dinv22154 Davidia involucrata HOM05D003775 ORTHO05D004314 1.6e-44 183.3 181 59.7
AL7G21200 Arabidopsis lyrata HOM05D003775 ORTHO05D004314 6.1e-44 181.4 195 55.9
A03p60400 Brassica napus HOM05D003775 ORTHO05D004314 8.0e-44 181.0 194 55.7
Eucgr.G03263 Eucalyptus grandis HOM05D003775 ORTHO05D004314 1.0e-43 180.6 196 55.6
EL10Ac1g00474 Beta vulgaris HOM05D003775 ORTHO05D004314 8.9e-43 177.6 198 55.1
Os07g0661300 Oryza sativa ssp. japonica HOM05D003775 ORTHO05D004314 8.9e-43 177.6 198 54.5
AT4G30890 Arabidopsis thaliana HOM05D003775 ORTHO05D004314 2.0e-42 176.4 195 54.9
Nn2g15064 Nelumbo nucifera HOM05D003775 ORTHO05D004314 5.7e-42 174.9 171 60.8
Solyc01g068240.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 2.2e-41 172.9 195 53.8
Sopen01g030170 Solanum pennellii HOM05D003775 ORTHO05D004314 2.2e-41 172.9 195 53.8
DCAR_002120 Daucus carota HOM05D003775 ORTHO05D004314 6.3e-41 171.4 195 54.4
Peaxi162Scf00087g00128 Petunia axillaris HOM05D003775 ORTHO05D004314 8.3e-41 171.0 195 53.3
Migut.N01820 Erythranthe guttata HOM05D003775 ORTHO05D004314 1.1e-40 170.6 195 53.8
Migut.O00905 Erythranthe guttata HOM05D003775 ORTHO05D004314 1.1e-40 170.6 195 53.8
Mapoly0004s0306 Marchantia polymorpha HOM05D003775 ORTHO05D004314 1.1e-40 170.6 191 51.3
Zm00001eb329890 Zea mays HOM05D003775 ORTHO05D004314 1.8e-40 169.9 195 52.3
SalBow6G4543 Salvia bowleyana HOM05D003775 ORTHO05D004314 5.4e-40 168.3 195 53.3
Lalb_Chr01g0000601 Lupinus albus HOM05D003775 ORTHO05D004314 1.2e-39 167.2 176 58.5
Zm00001eb110870 Zea mays HOM05D003775 ORTHO05D004314 1.7e-38 163.3 198 52.0
SGA_v2.0_scaffold354G49741 Striga asiatica HOM05D003775 ORTHO05D004314 6.6e-38 161.4 195 51.3
Nitab4.5_0000316g0220 Nicotiana tabacum HOM05D003775 ORTHO05D004314 1.2e-36 157.1 195 51.3
Cfa010842 Carpinus fangiana HOM05D003775 ORTHO05D004314 4.7e-36 155.2 188 52.7
Nitab4.5_0001543g0030 Nicotiana tabacum HOM05D003775 ORTHO05D004314 1.8e-35 153.3 201 49.3
Pp3c16_4180 Physcomitrium patens HOM05D003775 ORTHO05D004314 3.2e-32 142.5 191 42.4
unitig_0.g1004 Utricularia gibba HOM05D001495 ORTHO05D004314 3.2e-32 142.5 226 43.4
Lsat_1_v5_gn_4_28840 Lactuca sativa HOM05D003775 ORTHO05D004314 1.2e-31 140.6 162 51.2
Nitab4.5_0006878g0040 Nicotiana tabacum HOM05D003775 ORTHO05D004314 2.7e-31 139.4 179 50.8
Dinv36216 Davidia involucrata HOM05D003775 ORTHO05D004314 6.0e-31 138.3 137 58.4
MBI16_g10269_MAGBIO Magnolia biondii HOM05D003775 ORTHO05D004314 5.0e-30 135.2 180 51.7
vmacro13720 Vaccinium macrocarpon HOM05D003775 ORTHO05D004314 6.6e-30 134.8 182 46.7
Haze_03108 Corylus avellana HOM05D003775 ORTHO05D004314 7.3e-29 131.3 179 49.2
CBR_g66808 Chara braunii HOM05D003775 ORTHO05D004314 3.6e-28 129.0 209 43.5
SEGI_11797 Sequoiadendron giganteum HOM05D003775 ORTHO05D004314 4.7e-28 128.6 107 60.7
AagrBONN_evm.TU.Sc2ySwM_344.2031 Anthoceros agrestis HOM05D003775 ORTHO05D004314 1.2e-26 124.0 191 40.3
MD02G1296600 Malus domestica HOM05D003775 ORTHO05D004314 7.5e-26 121.3 81 75.3
AUR62014380 Chenopodium quinoa HOM05D003775 ORTHO05D004314 1.4e-24 117.1 137 54.0
PGSC0003DMG400012740 Solanum tuberosum HOM05D003775 ORTHO05D004314 1.9e-21 106.7 217 36.9
SGA_v2.0_scaffold3339G54319 Striga asiatica HOM05D003775 ORTHO05D004314 2.1e-20 103.2 55 92.7
PGSC0003DMG400012741 Solanum tuberosum HOM05D003775 ORTHO05D004314 8.9e-19 97.8 89 60.7
PGSC0003DMG400012743 Solanum tuberosum HOM05D003775 ORTHO05D004314 3.7e-17 92.4 92 53.3
PGSC0003DMG400012744 Solanum tuberosum HOM05D003775 ORTHO05D004314 2.4e-16 89.7 92 52.2
SMO165G0072 Selaginella moellendorffii HOM05D003775 ORTHO05D004314 9.2e-16 87.8 197 32.5
Dinv00616 Davidia involucrata HOM05D003775 ORTHO05D004314 2.3e-14 83.2 57 73.7
CSS0013997 Camellia sinensis var. sinensis HOM05D003775 ORTHO05D004314 1.5e-13 80.5 58 69.0
Cfa024126 Carpinus fangiana HOM05D003775 ORTHO05D004314 4.7e-12 75.5 194 31.4
Peaxi162Scf00004g03811 Petunia axillaris HOM05D003775 ORTHO05D004314 1.4e-11 73.9 60 63.3
Cre05.g234850 Chlamydomonas reinhardtii HOM05D003775 ORTHO05D004314 2.0e-10 70.1 213 26.8
Oeu062077.1 Olea europaea HOM05D003775 ORTHO05D004314 5.8e-10 68.6 41 73.2
DCAR_031617 Daucus carota HOM05D003775 ORTHO05D004314 1.3e-09 67.4 58 67.2
Psat7g109680 Pisum sativum HOM05D003775 ORTHO05D004314 2.9e-09 66.2 58 65.5
MELO3C011731.2 Cucumis melo HOM05D003775 ORTHO05D004314 5.4e-08 62.0 58 58.6


User provided reference genes

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