Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 1.8e-188 662.5 356 100.0
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 2.8e-125 452.6 374 65.8
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 1.3e-117 427.2 383 61.1
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 3.2e-113 412.5 363 61.4
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 1.8e-108 396.7 391 59.1
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.7e-104 382.9 387 55.6
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 3.9e-103 379.0 386 56.7
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 6.7e-103 378.3 381 55.1
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 2.8e-101 372.9 382 55.8
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 8.2e-101 371.3 378 59.0
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 2.4e-100 369.8 377 57.0
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 4.1e-100 369.0 378 57.1
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 2.0e-99 366.7 395 52.4
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 5.9e-99 365.2 392 54.3
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 1.7e-98 363.6 383 54.6
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 2.9e-98 362.8 400 52.2
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 2.9e-98 362.8 389 54.0
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 3.8e-98 362.5 382 53.9
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 5.0e-98 362.1 377 54.1
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 6.5e-98 361.7 377 55.2
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 8.5e-98 361.3 397 52.4
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 1.9e-97 360.1 393 50.6
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 1.9e-97 360.1 399 52.1
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 2.5e-97 359.8 393 50.6
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.5e-97 359.8 387 53.5
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 2.5e-97 359.8 383 57.4
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 7.2e-97 358.2 375 57.1
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 9.4e-97 357.8 377 53.3
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 1.2e-96 357.5 384 54.2
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 3.6e-96 355.9 365 54.8
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 6.1e-96 355.1 384 51.8
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.0e-95 354.4 382 53.9
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.4e-95 354.0 374 54.5
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 1.4e-95 354.0 418 51.4
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.8e-95 353.6 393 52.7
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.3e-95 353.2 364 54.9
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 4.0e-95 352.4 374 56.7
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 8.8e-95 351.3 360 54.4
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 1.5e-94 350.5 381 52.2
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 2.6e-94 349.7 401 52.4
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 2.6e-94 349.7 401 52.6
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 4.4e-94 349.0 388 51.0
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 4.4e-94 349.0 363 54.5
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 4.4e-94 349.0 375 53.9
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 2.8e-93 346.3 389 52.2
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 4.8e-93 345.5 359 54.9
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 1.1e-92 344.4 365 55.3
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 1.4e-92 344.0 378 54.2
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 1.8e-92 343.6 359 54.6
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 1.8e-92 343.6 373 53.6
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.8e-92 343.6 377 54.1
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 3.1e-92 342.8 389 53.7
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 5.3e-92 342.0 354 54.2
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 7.0e-92 341.7 353 55.2
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 4.5e-91 339.0 358 54.7
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 7.7e-91 338.2 354 55.4
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 7.7e-91 338.2 346 56.6
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 1.0e-90 337.8 372 54.3
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 1.0e-90 337.8 379 52.5
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 1.3e-90 337.4 384 51.6
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 1.7e-90 337.0 346 55.2
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 2.9e-90 336.3 371 51.2
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 2.9e-90 336.3 377 50.7
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 2.9e-90 336.3 384 51.3
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 5.0e-90 335.5 386 50.3
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 5.0e-90 335.5 441 46.5
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 6.5e-90 335.1 382 53.9
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 6.5e-90 335.1 385 50.9
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 2.5e-89 333.2 378 54.0
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 2.5e-89 333.2 367 51.0
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 5.5e-89 332.0 383 50.7
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 5.5e-89 332.0 371 50.9
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 2.1e-88 330.1 371 50.9
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 6.1e-88 328.6 384 52.9
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 1.4e-87 327.4 344 57.0
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 4.0e-87 325.9 464 46.1
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 5.2e-87 325.5 443 47.2
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 8.8e-87 324.7 388 52.6
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 1.5e-86 323.9 390 50.0
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 2.6e-86 323.2 342 51.5
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 3.4e-86 322.8 377 50.9
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 3.4e-86 322.8 369 51.8
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 5.7e-86 322.0 443 46.5
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 1.8e-84 317.0 395 47.8
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 4.1e-84 315.8 356 52.0
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 5.4e-84 315.5 366 50.8
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 3.5e-83 312.8 359 49.0
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 3.8e-82 309.3 409 46.9
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 3.8e-82 309.3 368 50.3
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 6.5e-82 308.5 617 36.0
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 1.5e-81 307.4 351 47.9
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 7.2e-81 305.1 398 49.0
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 3.6e-80 302.8 388 45.9
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 6.1e-80 302.0 426 47.4
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 1.4e-79 300.8 372 50.8
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 6.8e-79 298.5 376 48.9
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 8.8e-79 298.1 357 48.5
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 1.7e-77 293.9 408 42.2
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 1.0e-74 284.6 351 44.2
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 1.7e-74 283.9 463 41.9
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 5.6e-73 278.9 319 53.0
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 3.4e-70 269.6 335 50.4
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 1.6e-67 260.8 378 44.7
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 3.5e-67 259.6 364 47.8
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.7e-58 230.7 158 67.7
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 2.5e-49 200.3 141 68.8
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 7.6e-46 188.7 134 67.2
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 1.2e-43 181.4 351 34.8
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 6.6e-42 175.6 345 33.0
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 8.6e-42 175.3 374 34.0
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 8.1e-40 168.7 323 35.3
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 1.3e-37 161.4 110 70.9
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 1.9e-36 157.5 283 38.9
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 3.5e-35 153.3 341 32.6
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 3.3e-25 120.2 229 32.8
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 3.3e-25 120.2 213 39.9
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 1.3e-24 118.2 181 38.1
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 1.1e-20 105.1 190 31.1
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 5.5e-20 102.8 100 56.0
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 7.4e-17 92.4 178 33.7
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 9.6e-17 92.0 64 65.6
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 8.1e-16 89.0 76 56.6
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 9.0e-15 85.5 55 76.4
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 8.4e-13 79.0 60 63.3
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.9e-09 67.8 59 55.9


User provided reference genes

Program Settings