Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16039 Striga asiatica HOM05D007161 ORTHO05D009103 6.8e-52 207.6 155 100.0
SalBow7G4182 Salvia bowleyana HOM05D007161 ORTHO05D009103 1.4e-33 146.7 155 79.4
MSTRG.4482 Avicennia marina HOM05D007161 ORTHO05D009103 1.9e-30 136.3 175 69.7
Peaxi162Scf00201g00331 Petunia axillaris HOM05D007161 ORTHO05D009103 6.2e-29 131.3 139 80.6
Oeu017188.1 Olea europaea HOM05D007161 ORTHO05D009103 1.2e-27 127.1 137 78.1
Dinv22772 Davidia involucrata HOM05D007161 ORTHO05D009103 5.8e-27 124.8 166 69.3
MD06G1225900 Malus domestica HOM05D007161 ORTHO05D009103 1.7e-26 123.2 142 80.3
Nitab4.5_0001485g0090 Nicotiana tabacum HOM05D007161 ORTHO05D009103 2.2e-26 122.9 157 72.6
Sopen03g034090 Solanum pennellii HOM05D007161 ORTHO05D009103 2.2e-26 122.9 159 71.1
PGSC0003DMG400024633 Solanum tuberosum HOM05D007161 ORTHO05D009103 6.5e-26 121.3 159 71.1
Cc00_g12110 Coffea canephora HOM05D007161 ORTHO05D009103 1.1e-25 120.6 160 68.1
Prupe.5G206100 Prunus persica HOM05D007161 ORTHO05D009103 2.5e-25 119.4 155 73.5
CAN.G1228.16 Capsicum annuum HOM05D007161 ORTHO05D009103 3.2e-25 119.0 158 69.6
TWI81G0640 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 3.2e-25 119.0 148 73.6
Migut.D01637 Erythranthe guttata HOM05D007161 ORTHO05D009103 4.2e-25 118.6 160 74.4
Manes.06G083700 Manihot esculenta HOM05D007161 ORTHO05D009103 4.2e-25 118.6 160 69.4
TWI60G0438 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 4.2e-25 118.6 148 73.6
CiPaw.11G054500 Carya illinoinensis HOM05D007161 ORTHO05D009103 5.5e-25 118.2 167 68.3
RcHm_v2.0_Chr7g0183201 Rosa chinensis HOM05D007161 ORTHO05D009103 1.2e-24 117.1 145 75.2
QL10p019814 Quercus lobata HOM05D007161 ORTHO05D009103 1.6e-24 116.7 159 67.3
Ciclev10022373m.g Citrus clementina HOM05D007161 ORTHO05D009103 2.7e-24 115.9 160 66.9
MD14G1212800 Malus domestica HOM05D007161 ORTHO05D009103 2.7e-24 115.9 140 77.9
Potri.015G058600 Populus trichocarpa HOM05D007161 ORTHO05D009103 3.5e-24 115.5 160 69.4
DCAR_011565 Daucus carota HOM05D007161 ORTHO05D009103 4.6e-24 115.2 145 73.1
Haze_07737 Corylus avellana HOM05D007161 ORTHO05D009103 6.0e-24 114.8 165 67.9
CSS0029825 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 1.0e-23 114.0 122 83.6
Solyc03g115020.3 Solanum lycopersicum HOM05D007161 ORTHO05D009103 1.0e-23 114.0 151 70.9
GSVIVG01008106001 Vitis vinifera HOM05D007161 ORTHO05D009103 1.0e-23 114.0 158 67.7
MSTRG.9598 Avicennia marina HOM05D007161 ORTHO05D009103 1.3e-23 113.6 175 65.1
Sabra15G0084100 Salix brachista HOM05D007161 ORTHO05D009103 1.3e-23 113.6 165 68.5
Rhsim08G0144900 Rhododendron simsii HOM05D007161 ORTHO05D009103 2.3e-23 112.8 151 72.8
Cfa019345 Carpinus fangiana HOM05D007161 ORTHO05D009103 3.0e-23 112.5 165 67.3
CSS0009196 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 3.9e-23 112.1 122 82.8
Eucgr.B00604 Eucalyptus grandis HOM05D007161 ORTHO05D009103 6.7e-23 111.3 162 67.3
Nitab4.5_0007356g0010 Nicotiana tabacum HOM05D007161 ORTHO05D009103 6.7e-23 111.3 121 83.5
Atru.chr9.557 Acer truncatum HOM05D007161 ORTHO05D009103 1.1e-22 110.5 169 64.5
CANSAT56G0131 Cannabis sativa HOM05D007161 ORTHO05D009103 1.1e-22 110.5 168 66.1
TAR629G0203 Trochodendron aralioides HOM05D007161 ORTHO05D009103 1.9e-22 109.8 168 64.9
vmacro17616 Vaccinium macrocarpon HOM05D007161 ORTHO05D009103 1.9e-22 109.8 180 62.2
PGR083G0667 Punica granatum HOM05D007161 ORTHO05D009103 3.3e-22 109.0 157 66.9
MELO3C002036.2 Cucumis melo HOM05D007161 ORTHO05D009103 9.6e-22 107.5 162 67.9
CsaV3_1G006050 Cucumis sativus L. HOM05D007161 ORTHO05D009103 9.6e-22 107.5 162 67.3
ECA246G0920 Erigeron canadensis HOM05D007161 ORTHO05D009103 9.6e-22 107.5 155 69.0
Hund02576 Selenicereus undatus HOM05D007161 ORTHO05D009103 1.6e-21 106.7 160 65.6
Lj1g0027416 Lotus japonicus HOM05D007161 ORTHO05D009103 2.1e-21 106.3 150 71.3
PSO017G0728 Papaver somniferum HOM05D007161 ORTHO05D009103 2.1e-21 106.3 158 67.7
BcaB01g05640 Brassica carinata HOM05D007161 ORTHO05D009103 2.8e-21 105.9 144 70.1
ClCG04G011740 Citrullus lanatus HOM05D007161 ORTHO05D009103 3.7e-21 105.5 164 67.1
Lsat_1_v5_gn_5_22381 Lactuca sativa HOM05D007161 ORTHO05D009103 3.7e-21 105.5 146 71.2
A03p03560 Brassica napus HOM05D007161 ORTHO05D009103 4.8e-21 105.1 144 69.4
BraA03t09706Z Brassica rapa HOM05D007161 ORTHO05D009103 4.8e-21 105.1 144 69.4
Sc11g0004490 Simmondsia chinensis HOM05D007161 ORTHO05D009103 4.8e-21 105.1 137 70.8
C03p04010 Brassica napus HOM05D007161 ORTHO05D009103 8.2e-21 104.4 144 69.4
BolC3t12938H Brassica oleracea HOM05D007161 ORTHO05D009103 8.2e-21 104.4 145 69.7
Glyma.04G161600 Glycine max HOM05D007161 ORTHO05D009103 8.2e-21 104.4 156 66.7
Oeu044879.1 Olea europaea HOM05D007161 ORTHO05D009103 8.2e-21 104.4 91 81.3
CDE05G0262 Ceratophyllum demersum HOM05D007161 ORTHO05D009103 1.1e-20 104.0 137 74.5
Nn4g23440 Nelumbo nucifera HOM05D007161 ORTHO05D009103 1.1e-20 104.0 137 75.2
PSO478G3435 Papaver somniferum HOM05D007161 ORTHO05D009103 1.1e-20 104.0 141 71.6
COL.COLO4_24339 Corchorus olitorius HOM05D007161 ORTHO05D009103 1.4e-20 103.6 161 66.5
Gohir.A07G068000 Gossypium hirsutum HOM05D007161 ORTHO05D009103 3.1e-20 102.4 172 64.0
FvH4_5g13740 Fragaria vesca HOM05D007161 ORTHO05D009103 4.0e-20 102.1 137 72.3
Sp6g34900 Schrenkiella parvula HOM05D007161 ORTHO05D009103 5.3e-20 101.7 144 68.1
FAN08G2338 Fragaria x ananassa HOM05D007161 ORTHO05D009103 6.9e-20 101.3 140 72.1
Gohir.D07G072600 Gossypium hirsutum HOM05D007161 ORTHO05D009103 6.9e-20 101.3 172 64.0
Gorai.001G076800 Gossypium raimondii HOM05D007161 ORTHO05D009103 6.9e-20 101.3 172 64.0
FAN18G1870 Fragaria x ananassa HOM05D007161 ORTHO05D009103 9.0e-20 100.9 137 72.3
Sed0004238 Sechium edule HOM05D007161 ORTHO05D009103 9.0e-20 100.9 164 65.2
THA.LOC104801155 Tarenaya hassleriana HOM05D007161 ORTHO05D009103 1.2e-19 100.5 168 60.7
Ca_14363_v3 Cicer arietinum L. HOM05D007161 ORTHO05D009103 1.5e-19 100.1 162 64.8
Glyma.06G204200 Glycine max HOM05D007161 ORTHO05D009103 2.0e-19 99.8 169 62.7
Thecc.03G103000 Theobroma cacao HOM05D007161 ORTHO05D009103 2.0e-19 99.8 168 64.3
Thhalv10014904m.g Eutrema salsugineum HOM05D007161 ORTHO05D009103 2.6e-19 99.4 144 67.4
HanXRQChr08g0230491 Helianthus annuus HOM05D007161 ORTHO05D009103 2.6e-19 99.4 154 65.6
Phvul.009G202100 Phaseolus vulgaris HOM05D007161 ORTHO05D009103 3.4e-19 99.0 164 63.4
Ah.02g114100 Amaranthus hybridus HOM05D007161 ORTHO05D009103 4.5e-19 98.6 157 64.3
BcaB01g05681 Brassica carinata HOM05D007161 ORTHO05D009103 5.8e-19 98.2 145 68.3
arahy.Tifrunner.gnm1.ann1.N0KAAL Arachis hypogaea HOM05D007161 ORTHO05D009103 7.6e-19 97.8 159 64.8
FAN13G1189 Fragaria x ananassa HOM05D007161 ORTHO05D009103 7.6e-19 97.8 145 68.3
arahy.Tifrunner.gnm1.ann1.KM320G Arachis hypogaea HOM05D007161 ORTHO05D009103 1.3e-18 97.1 159 64.8
Carub.0006s0694 Capsella rubella HOM05D007161 ORTHO05D009103 1.7e-18 96.7 150 65.3
CARHR205130 Cardamine hirsuta HOM05D007161 ORTHO05D009103 1.7e-18 96.7 144 68.8
AUR62008547 Chenopodium quinoa HOM05D007161 ORTHO05D009103 2.2e-18 96.3 146 69.2
HanXRQChr17g0550221 Helianthus annuus HOM05D007161 ORTHO05D009103 2.2e-18 96.3 67 74.6
Os12g0575000 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 2.2e-18 96.3 134 67.9
Aqoxy3G03679 Aquilegia oxysepala HOM05D007161 ORTHO05D009103 2.9e-18 95.9 150 66.0
Duzib084G1357 Durio zibethinus HOM05D007161 ORTHO05D009103 3.8e-18 95.5 120 78.3
Lj5C102G4 Lonicera japonica HOM05D007161 ORTHO05D009103 3.8e-18 95.5 138 71.7
Lalb_Chr12g0199331 Lupinus albus HOM05D007161 ORTHO05D009103 3.8e-18 95.5 142 71.1
AUR62021546 Chenopodium quinoa HOM05D007161 ORTHO05D009103 5.0e-18 95.1 116 79.3
ATR0177G008 Amborella trichopoda HOM05D007161 ORTHO05D009103 1.1e-17 94.0 138 69.6
EL10Ac5g11145 Beta vulgaris HOM05D007161 ORTHO05D009103 2.5e-17 92.8 150 65.3
TPR.G12153 Trifolium pratense HOM05D007161 ORTHO05D009103 2.5e-17 92.8 164 61.6
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 3.2e-17 92.4 129 72.9
Medtr3g026020 Medicago truncatula HOM05D007161 ORTHO05D009103 4.2e-17 92.0 158 63.9
Psat5g207080 Pisum sativum HOM05D007161 ORTHO05D009103 5.5e-17 91.7 163 63.2
SEGI_08112 Sequoiadendron giganteum HOM05D007161 ORTHO05D009103 7.1e-17 91.3 121 71.9
AT5G08050 Arabidopsis thaliana HOM05D007161 ORTHO05D009103 9.3e-17 90.9 145 66.9
AL6G18400 Arabidopsis lyrata HOM05D007161 ORTHO05D009103 1.0e-15 87.4 145 66.2
Aa31LG3G18490 Aethionema arabicum HOM05D007161 ORTHO05D009103 1.8e-15 86.7 144 63.9
AagrBONN_evm.TU.Sc2ySwM_344.2890 Anthoceros agrestis HOM05D007161 ORTHO05D009103 8.7e-15 84.3 122 73.8
Mapoly0107s0029 Marchantia polymorpha HOM05D007161 ORTHO05D009103 1.3e-13 80.5 120 74.2
Os11g0460900 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 2.8e-13 79.3 133 39.1
Peaxi162Scf00009g00010 Petunia axillaris HOM05D007161 ORTHO05D009103 3.1e-12 75.9 113 54.9
SMO139G0085 Selaginella moellendorffii HOM05D007161 ORTHO05D009103 4.1e-12 75.5 120 65.8
Pp3c1_19210 Physcomitrium patens HOM05D007161 ORTHO05D009103 9.0e-12 74.3 126 65.9
Zm00001eb029520 Zea mays HOM05D007161 ORTHO05D009103 9.0e-12 74.3 66 59.1
Actinidia04818 Actinidia chinensis HOM05D007161 ORTHO05D009103 2.5e-06 56.2 113 66.4


User provided reference genes

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