Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 2.7e-109 398.7 199 100.0
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 7.4e-91 337.4 197 86.3
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 4.8e-90 334.7 197 84.8
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.8e-89 332.8 197 84.8
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 1.8e-89 332.8 197 85.3
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 3.1e-89 332.0 197 84.8
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 5.3e-89 331.3 197 85.3
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 9.0e-89 330.5 197 84.8
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 9.0e-89 330.5 197 84.3
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 1.2e-88 330.1 197 84.3
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 1.2e-88 330.1 197 84.8
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.0e-88 329.3 194 86.6
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 2.6e-88 328.9 197 84.3
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 3.4e-88 328.6 197 84.8
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 3.4e-88 328.6 197 83.2
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 4.5e-88 328.2 197 84.3
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 4.5e-88 328.2 197 84.8
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 5.8e-88 327.8 197 84.3
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 5.8e-88 327.8 197 83.8
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 7.6e-88 327.4 197 83.2
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 7.6e-88 327.4 197 83.2
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 1.3e-87 326.6 197 83.2
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 1.3e-87 326.6 197 83.8
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 1.7e-87 326.2 197 82.7
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 2.2e-87 325.9 193 85.5
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 3.8e-87 325.1 197 82.7
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 3.8e-87 325.1 197 82.7
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 3.8e-87 325.1 197 82.2
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 4.9e-87 324.7 197 83.8
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 3.2e-86 322.0 199 81.4
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 4.2e-86 321.6 197 83.2
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 4.2e-86 321.6 197 83.2
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 5.5e-86 321.2 197 82.7
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 5.5e-86 321.2 196 81.1
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 7.1e-86 320.9 197 81.7
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 9.3e-86 320.5 194 82.5
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 9.3e-86 320.5 197 83.8
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 1.2e-85 320.1 193 84.5
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.2e-85 320.1 197 81.7
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 1.2e-85 320.1 197 81.2
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 1.6e-85 319.7 197 81.7
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 2.1e-85 319.3 197 81.2
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 2.1e-85 319.3 197 81.7
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 2.1e-85 319.3 197 80.7
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 2.1e-85 319.3 197 82.2
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 2.7e-85 318.9 197 81.7
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 2.7e-85 318.9 197 79.7
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 3.5e-85 318.5 197 81.2
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 4.6e-85 318.2 196 81.6
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 4.6e-85 318.2 197 81.2
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 4.6e-85 318.2 195 81.5
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 6.0e-85 317.8 197 80.7
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 7.9e-85 317.4 197 81.2
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 7.9e-85 317.4 197 81.2
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.0e-84 317.0 193 82.9
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.8e-84 316.2 197 80.7
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 3.0e-84 315.5 193 83.4
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 3.9e-84 315.1 193 81.3
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 5.1e-84 314.7 197 80.2
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 6.7e-84 314.3 189 83.6
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 6.7e-84 314.3 195 80.0
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 8.7e-84 313.9 197 81.2
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 1.1e-83 313.5 217 75.6
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 1.5e-83 313.2 196 79.6
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.9e-83 312.8 197 78.7
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 3.3e-83 312.0 190 82.1
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 4.3e-83 311.6 189 84.1
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 5.6e-83 311.2 206 79.1
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 1.3e-82 310.1 193 80.3
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 1.6e-82 309.7 197 78.7
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 1.6e-82 309.7 193 79.8
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 2.8e-82 308.9 197 78.7
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 2.8e-82 308.9 190 81.1
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 2.8e-82 308.9 197 78.2
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 3.7e-82 308.5 209 76.6
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 6.2e-82 307.8 197 77.7
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 1.1e-81 307.0 194 78.9
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 1.8e-81 306.2 193 78.8
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.8e-81 306.2 193 79.8
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 3.1e-81 305.4 197 77.7
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 6.9e-81 304.3 193 78.8
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 1.2e-80 303.5 197 76.6
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 4.5e-80 301.6 194 77.8
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 4.5e-80 301.6 197 76.1
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 4.5e-80 301.6 193 79.3
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 8.4e-79 297.4 193 76.2
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 4.2e-78 295.0 197 78.2
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 5.5e-78 294.7 191 77.0
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 5.5e-78 294.7 191 77.0
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 2.7e-77 292.4 191 76.4
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 2.7e-77 292.4 191 75.9
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 4.6e-77 291.6 190 76.8
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 6.0e-77 291.2 191 75.4
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 1.8e-76 289.7 197 75.6
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 6.3e-74 281.2 199 71.9
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 5.3e-73 278.1 172 83.7
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 2.6e-72 275.8 172 82.6
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 5.0e-71 271.6 197 71.1
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 6.5e-71 271.2 198 72.2
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 1.9e-70 269.6 168 78.6
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.6e-69 266.5 194 71.1
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 2.1e-69 266.2 168 81.5
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.8e-68 263.1 164 78.7
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 3.3e-67 258.8 172 76.7
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 1.3e-66 256.9 194 72.7
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 2.2e-66 256.1 194 70.1
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 4.8e-66 255.0 172 76.2
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 1.6e-61 240.0 156 74.4
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 6.7e-60 234.6 145 80.7
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 5.7e-59 231.5 181 70.2
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 2.2e-58 229.6 142 79.6
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 1.4e-57 226.9 143 79.0
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 1.1e-54 217.2 199 54.8
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 2.0e-51 206.5 194 53.6
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 4.1e-49 198.7 196 54.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 8.5e-47 191.0 179 61.5
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.6e-45 186.8 120 80.0
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 1.8e-44 183.3 120 77.5
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 3.0e-44 182.6 120 77.5
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 3.0e-44 182.6 101 88.1
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 2.6e-43 179.5 120 75.0
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 2.8e-42 176.0 117 76.9
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.8e-39 165.6 90 90.0
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 5.0e-39 165.2 90 86.7
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.1e-38 164.1 86 91.9
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 1.2e-37 160.6 92 79.3
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 3.6e-37 159.1 171 56.1
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 1.2e-32 144.1 88 79.5
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.5e-30 137.1 90 78.9
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 7.2e-30 134.8 66 95.5
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 3.6e-29 132.5 144 50.7
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 8.3e-26 121.3 78 76.9
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.1e-25 120.9 70 88.6
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 3.7e-18 95.9 55 80.0
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 9.5e-14 81.3 49 79.6
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 5.2e-12 75.5 56 62.5
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 3.2e-09 66.2 199 28.6
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 3.2e-09 66.2 200 26.0
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 7.0e-09 65.1 199 27.6
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 7.0e-09 65.1 199 27.1
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.6e-08 63.9 199 27.6
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.7e-07 60.5 199 25.6
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 3.0e-07 59.7 198 25.3
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 3.0e-07 59.7 199 25.1
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 3.9e-07 59.3 195 27.7
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 5.6e-06 55.5 217 26.3


User provided reference genes

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